Alignment of NM_009209 and JH739478:169085-171215

NM_009209

aaaaattccc aactcaggcg ctccttttct tggaagctgg gagtccgctc  50
agccctaaga tcctgacgtc tgggctcccc tgggtggtct cagtttgtgc  100
aaacgggcgg caagccttgt tgactgcttt ttctcctttc atacaagcag  150
aactttggtg tgtccccaga acctccgaag tccctctctc cagccgcacc  200
catgcttctg gcgcgaatga atccgcaggt gcagccggag ctcggcgggg  250
cggacccgct gcctgagcag cccctgaggc cctgcaaaac cgccgatcta  300
ctagtggtga aggaacgcaa cggagtccag tgcctcttgg cgtcccagga  350
cagcgacgct cagccccggG AgACtTGGGg caaGaAGATt GAtTTCcTgc  400
TGTCcgtgGT GGGcTTCGCt GTGGacCTgG cCAACGTgTG GCGgTTCCCt  450
TAtCTCTGCT ACaagAAtGG tGGtGGTgcc ttcctgattc catacacgct  500
gttcctcatc attgctggga tgcctctgtt ttacatggag ctggctctgg  550
ggcaatacaa ccgggagggg gcagccacag tgtggaagat ctgccctttc  600
ttcaaaggag tgggctatgc tgtgatcctc attgccctct atgtcggctt  650
ttactacaat gtcatcatcg cctggtcact ctactacctc tttgcatcct  700
tcaccttgaA CCTGCCCTGG aCCAacTGcG GaCACTCCTG GAACAGCCcc  750
aactgtacgg accccaaact cctcaacgcc tcggtgctgg gtgaccatac  800
caaatactcc aaatacaagt tcacaccagc tgcggagttt tatgaacgcg  850
gagtcctgca cttgcacgag agcagtggga tccatgacat cggcctgcct  900
caatggcagc tgctgctctg tctgatggtc gtcatcgttg tcttgtattt  950
cagcctctgg aaaggagtga agacatcagg aaaggttgtc tggatcacag  1000
ccaccctgcc ttactttgtc ttgtttgtgc tcctggtcca tggcgtcaca  1050
ctgcccggtg cctccaatgg catcaatgcc tacttgcaca ttgacttcta  1100
ccgcctcaag gaggccacgg tatggattga tgctgcaacc cagatatttt  1150
tttctctggg ggctggattt ggagtcttga ttgcatttgc cagttacaat  1200
aaatttgaca acaactgtta cagggatgct ctactgacca gcaccatcaa  1250
ctgtgttacc agttttattt ctggatttgc catcttctcc atccttggtt  1300
atatggccca tgaacataag gtcaatattg aggatgttgc cactgaagga  1350
gctgggcttg tgtttatcct gtatccagaa gccatctcta ctctgtcagg  1400
atccacgttc tgggccgtcc tgttcttctt gatgctcctg gctctggggc  1450
tagatagttc aatgggaggc atggaagcag tcatcactgg actggctgat  1500
gacttccagg tcctgaagcg acaccggaaa ctcttcacgt gtgttgtcac  1550
catcagcacc ttccttctgg cattgttttg cataacaaag ggagggattt  1600
atgtcctcac tctgctggac acctttgcag caggcacctc cattctgttt  1650
gcggtgctta tggaagctat tggagtttcc tggttttatg gtgtggacag  1700
gttcagcaat gacatccagc agatgatggg gtttaagcca ggcctgtact  1750
ggaggctgtg ttggaagttc gtgagccccg ccttcctcct gtttgtggtg  1800
gtggtcagca tcatcaactt caagccgctt acctatgatg actacaccta  1850
tcctccctgg gccaactggg tcgggtgggg catcgccctc tcatccatga  1900
tcctggtccc tgcctatgtc atctacaagt tcctcagcat acgcggctcc  1950
ctgtgggaga gagtggccta cggaatcacc ccggagaatg agcaccacct  2000
ggtggcccag agagacgtga gacagttcca gttgcggcac tggctggcta  2050
tctgaacctg gcaatgtgga ggaggaggag gaacccatgt gccaacgtcc  2100
gggtccaggg caccctcttt gcccccattc ggataccgcc ttgggattcc  2150
tctcctggaa gacaccttcc ccgtcgctcc cgttttctca tttactaatg  2200
attccgtgac gctggttttg ttcaccttct gttcatctgg cctggaggca  2250
agcgagagtg gagaactggt gagcctcaag gaagaggctg gaaggaggaa  2300
gtgggacgtg aattctggaa ctctggcttg agggcaggtt tactgcattt  2350
ggagcacacc tcagctgagg tccacagccc gggcagaaac ccctcccgga  2400
tttgcttgta cttcagatca taaacaaaat cttccattca cccaggctga  2450
gaggagattg gcttctggtt agatatcaaa agcccaagca aagcctgaca  2500
gggtctgtgt gggggccaag gtgtgcaggt tacccctctc tttccattta  2550
tcctgtcacc gctccagcat ctgagcctct gtttgggagt ggggctttat  2600
ttgcactgaa aatgcagctg gtagatactc tgagtctggg ggcagggcgt  2650
taggcagaaa ctcttaccta gctatctagt taatcaaagg ctggttttgg  2700
tatgttctag aatattactc taacttctga tgtttggaga gcccccaaac  2750
catgatttta ggggaagaat gtagctgcat caccagtgag ggagttcccc  2800
aaagtcagat cctttagaaa ggtggtaacc gctagacaaa ttgtgcctgc  2850
caaggccacc tgccagtctt gttctgtcag acatatgggt agttcccaag  2900
accttcctag ggattgagac agggtccctc taaagccaga tatgtatgcc  2950
catcacaggg atttctgtcc tgggaggcca ggtgggtgtt gtaggacaac  3000
ttgataggct gccatggttc tttgtggtct tcccctggga acctcagcag  3050
acaggggtcc tgagcagtag agtccattgg ctctgaaaat ggcctgtttc  3100
cttatttact tgacttggca ccttggaggg cacgatgggg cttaccacag  3150
cccagcccag cccagcctct caagtccagg gatggtattc tgactggagg  3200
ggacagtcag atggcttcag gaagtttcta agtttcacat gtgacacaaa  3250
cttgcaacta ctgccctctg gtggttaggt ttggttcatt gagggaaaga  3300
atggtttggt aaattgatgg catctccttg agctttatgt ttctggtttg  3350
agtctcttac gccctttctt gaaatctaga atcataggtt gccattgtga  3400
tagtaggatt cccttcctag gttgtgtgtg tgtgtgcgcg cgcgcatgtc  3450
tataagtgca catttgtgtg tgtctgtgta tgtgtatata tgtttgttta  3500
tatgtgtgtg tatgtctgtg tgtgtccttg tgtatgtgtg catgtctatg  3550
tgtgtatgtg tgtgttggtg tgcacgtgtg catgtgtgag tgtgtgtgtg  3600
tgattggagt catgtaggag gcacatggag aaactaggat gttcccatgt  3650
cccatggagg ctgtaaaaat aggccaggtg aggccagctg gggatgggga  3700
gatagtttac tctgaggacc accaaaattt cccccgaatc agagtccttg  3750
agttattcct tagaggaaat tttgtctttc catgtaagaa ggccatgtca  3800
gctcaaggca tcccgcattg gcaaatgtct tggagcactg gggaagagaa  3850
agctcttcca ccccatttca aggtaggtgc aagccaggac cctgctagca  3900
acaacctcaa cacttctcat gagtagtaat tcctttctag ttgttacctt  3950
taaaatattg gcacacacct ttactcccag cacttgggag gcagaggcag  4000
gtgaatttct gagttcaagg ccagcctggt ctacagagtg agttcaagga  4050
cagccagggc tacacagaga aaccctgtct cgaaaaaacc aaaaccaaat  4100
atatattgta ctatttaaac aatccatgct taccctccct gcctccaagc  4150
tgccccatag aaaggaagac tgcttcctgt ctccccactt ccctggtgag  4200
aagatgagaa atctcgcttg gtcaacatct catctcccta gggatctggg  4250
tggagcctcc atcctcatct tgtcgtcaca gtccagagca ccaggggact  4300
ccttgtttac ccttctgtgg gctgacacca aacagaatgc acagagtcac  4350
acttaagggg gaagagtgtt tcttagcaga acaaagtgtt gggagggggg  4400
cagaaggatg ttactcatct ccccacactg gctccctgag aggcattgtc  4450
ctcgcctttg atgacaagtc accctttgaa tagtggggcc tgagaagcaa  4500
gcgtccacct gactgtcttg agagcacatg ctcacaaaac ctgggtgcct  4550
tggatcagca cagggccacc attttctcgt tgccatctga gtggcctctt  4600
cacctgcaga cactgctccc tcccaggggt tgaagttgaa aatgtggtgc  4650
tagccgaatg agccccagac taaagcaatg gtgctgcttt gtggcaaagt  4700
tggctcctga gactgggaca aagtgctttg tgtttgtacg cccaggtgct  4750
ctagtggggg agcggggaga cacccagaaa gctcctggag ggtctcacga  4800
aggtgctagg aggtcacctg tacccacctt tccacccacg cttgccagat  4850
gggggctact ctgtcatcat aagtaatgct tgccctctgt gttctgactg  4900
atttttttat tttagtagta tggctcatcc agggccagca ttctcccaag  4950
taccgaatgt gacactcgac gcttttgata attaatctga tttttagaga  5000
attgttttct atgatatgtg agacctttgt ttaagacttt agcattactt  5050
agtctctgcc tgccagtctc cattctagag tcaagtgaga caggagagaa  5100
agtggatact aactcactgc agatatccta cacaacaaag gtcccaaaac  5150
tgccttaatt cctgcccagg tggaagccag tcccctgctg cacagtcatc  5200
cagtctaggt tttctagatt tggtaatgta agattgacac gttcttacca  5250
aagaaatcat ttctacccca ttaagctcac tcacttcatg tgtttatttc  5300
ttttgaaaac tatggtgagg aagtgatcag agtcagtgtc tggtgtagtg  5350
gaagcagctc ggcatttaga gttgattagc agtggctctg cagccaatta  5400
gctatatctt gagagaggaa ctttatatct ttagattttg ggaggggggc  5450
acatctctat aaaacagaga tttgatcatg tcatcaaagg acacatccta  5500
ttgaaaacat aaaccagaat aaagtataat aacatccttg tgctaaagtc  5550
acaatgaaga aagcagatca gctcagaagc ttccagaagt gaccccataa  5600
ctgaccatct attgggctta gaaatagagg tttctgcctg cagagctttg  5650
atattcctgt aatgtccagt agatcctctt tttcagagtt ttcttttcat  5700
ctcatgccag aaagccttga tgtttgagaa gaagtcaagt ctagcccagt  5750
cgatttgatg cttgggtagc attgagaagg cagagggtat cgctctgccc  5800
tgtgtttgct ggcctgggca cccacagctc tgcccacagg cagggtccct  5850
ggccctggtt ggtgaatgtg aagtcagggg cacctgtcct tgctctactg  5900
tctctacgtc tgtgtaaata ggattgtttc attcacatct tctccgtgtc  5950
acggaccgtc caagtatcgt gcggatctct gcgtctgctt tggatttatt  6000
ttgaaagttc tctttgtgga aaaaaaaaca aataaatgta cagtctaata  6050
aaggatattt cctgtgccgt gta

American alligator.JH739478 (reverse strand):

GAaACaTGGG cgcgGcAGAT gGAcTTCaTc aTGTCatgtG TGGGtTTCGC  171166
cGTGGggCTt GgCAACGTcT GGCGtTTCCC cTAcCTCTGC TACcgcAAcG  171116
GcGGcGGTag ggcccagctg gggcacgcgt gagcagggca cgggggggac  171066
gtgtcagggg cacgggaggt gtgggggggc cctgggacag gagtggggag  171016
gtcatgtgag tggcctaggg acatgggtgg ggagtgcagt gacaagcgca  170966
atggctgggg aggtcatgtg gggggggggg ctagggacat gggtgcctgg  170916
taggaggtca catggggggt ctgggggcac aggtcagggt gtagggacat  170866
ctgtacaggg tggggaggtt atgtgggggg tctggagatg ggcgtggggg  170816
tgagagagtc ccgtgaaggg gtccagggac agaggtggaa ggtgctaaga  170766
cacatgttgg gggcagggag gccatgtggg gggacagaaa tacgggtggg  170716
ggggatcaga gcatcatgag ggggtccaag gatgtgcgtg gggggtggca  170666
ggtcatttga gggatccagg gacacggggg gaggtcatgt gggggactag  170616
ggacatgcgt gggagccaag gcaatcacgt gggggtgcag ggacacgcgt  170566
ggaggcgggg ccagagcagg cgctgtccaa tctgggggtg ctggagtccc  170516
ctgcggggga cgggcaggcc tgggggtact ctggaggtat agaggggagc  170466
tgttcactcc ccactcctgc ccagcccccc tctccccccc ctccgcctgt  170416
ttccatctgt ctgtctgtcc aacccccctg cccccacttc ccatgtgtcc  170366
ttgtctatca gcctgtcaac acccgcaccc cacccacagc ctcacagtgc  170316
ccttcactcc ccacccgcag ccccctcctt tagccccatg atgcccctca  170266
ctcctaaccc gcagcccccc acctcccctc tgtcattgct ttaggaaccc  170216
tctgcacatg catgtgcata cacatgcaca ctctttaaca tacatgtgtg  170166
gggcatgcaa aactcatagg tgtccccttc cccccagtgt taatttccca  170116
ccccccaaca tggagggggg agggggatta tgaaatgagc tatggggggc  170066
actgtgggga ggggcaggga gagcccagga tataaataaa tttcctcctc  170016
acacacacac acacacacac acacacacac acacccatca catgctagca  169966
ccaccaggag tgggaattag ggacaccatg gttctatggg ggtggtgggg  169916
ggtgggactg caggtgaggc gtgaggggca ccctgaggtt tgaggagggc  169866
tgtggattgg gagtgaggga cactgcaggg tgaaggtggg ggctgcagtt  169816
tgggagtgag agaaagaaca gtggagctat tcctgactcc tcccccctcc  169766
gctccccatg ccttcctagg agtgtttctc atcccctacc tgttgatggc  169716
tgtgcttggg ggggtcccca tcttcttcct tgagatctcg ctggggcagt  169666
tcatgaaggc cgggagcctc tcagcctgga acattgcccc cctcttcaaa  169616
ggtcagtgac ctcccagggc cccctgatat ccccctgttg tccccccccc  169566
cagaatcggg cctggattgt gtctccaact tctccctttt ccccctaaga  169516
atgaggccag agtcaggccc aaatcagggc ccctggggag gggaaagacc  169466
tgcccattcc ttccagaatt gggcctgaat cagggctctc agggggacaa  169416
gaccctccct aggatcaggc ctggattgga atccttgcct cttccccacc  169366
atagggccag aatcaggctt gcattgggtc cccttaggca agagaaaccc  169316
cacccccacc cagggtcaga cctagattag gtgcccctga cacccagctc  169266
ctgatctctg accccctggc agggctggga ctggcgtcgc tgctgattgt  169216
gttctactgc aacacctact acgtgctggt gctgtcctgg gccctcttct  169166
acttgggcag cgctgtggct ggggcagtgg caagcggtgg agACCTGCCC  169116
TGGgCCActT GtGGcCACTC CTGGAACAGC C

Side by Side Alignment*

000370 gagacttggggcaagaagattgatttcctgctgtccgtggtgggcttcgc 000419
<<<<<< || || ||||    | |||| || ||| |  ||||    ||||| ||||| <<<<<<
171215 gaaacatgggcgcggcagatggacttcatcatgtcatgtgtgggtttcgc 171166

000420 tgtggacctggccaacgtgtggcggttcccttatctctgctacaagaatg 000469
<<<<<<  ||||  || | |||||| ||||| ||||| || |||||||||   || | <<<<<<
171165 cgtggggcttggcaacgtctggcgtttcccctacctctgctaccgcaacg 171116

000470 gtggtggt 000477
<<<<<< | || ||| <<<<<<
171115 gcggcggt 171108

000710 acctgccctggaccaactgcggacactcctggaacagcc 000748
<<<<<< ||||||||||| |||  || || |||||||||||||||| <<<<<<
169123 acctgccctgggccacttgtggccactcctggaacagcc 169085

*Aligned Blocks with gaps <= 8 bases are merged for this display