Alignment of Mouse.chr7 and HE569649:52756-53581

Mouse.chr7

GgAcCTCcTT atttctcAgA CagTAgATGA TaGGGTTGca GagAggTGtg  6501370
ACcAcTGTGt AGATGaCaGA CAGCacCtTG TtgaGgTCca tGgACTtGat  6501420
gcggctgGGg cgGCaATagA TgAagAgAGc TGCTgaGtAa AAgATgcCcA  6501470
CCACTaccAG aTGgGaGgca CAgGTggagA agGCcTTgCG CcggGcagca  6501520
gCTGaTggCA tgCgGAgtaC aGccATCcca AtAGctgaat aggAgGctAG  6501570
GgACACCaaG agtgtTCcAc AGAAGATGaC AAtgGCTgAg atgaAGtCtA  6501620
ccaGCtcTGT gAGGgccAca tgggtACAGG AcAaaTTgAg CAGaGgGGag  6501670
acaTCACAGa AAaatTGgtT gAggAcatTg ggGCCaCAGT aaGACAGaCt  6501720
GgCaatgCAt GtTGttttgG CCACtgagAC AAtcagCcCA CCtagCCAtG  6501770
aAGAcAAggc tAAgcccAaa catAcTTgGg gccTCATgAg cAGtGggTAG  6501820
tGtAGtGGgc ggCAGATgGC CACATAgCga TCATAaGCCA TGgaagcCAA  6501870
gAgGGTGcac tctGTGcaGa tgAggActat aaAGAAGAAg agTTGtgtCA  6501920
tgCAgagtgt GaAGggaATG tgGTAgGGcc cCGTCcAtAg acCcaCaAGt  6501970
AaggTgGGCA tggtgACTGA CaCaTAgcAc aTCtccaggc aGCtgAGGTT  6502020
gCccAggAag AagTACATgG GCTtGTGgAG ctcttTgTgA cTGaagAtGA  6502070
GgtagAtgAT gagtgtgTTC tccAcAAgtg TcAgcAggTA aAgAgTcAGg  6502120
AAgAcaGCAA AtAGGGcATc C

Atlantic cod.HE569649 :

GtAtCTCtTT ggactgtAcA CcaTAtATGA TgGGGTTGag GccActTGga  52805
ACtATGTGaA acataATGgC gGACAGCttC cTGTaaTCtg aGtACTgaGG  52855
aaaGCgATgc ATcAgaAtAG tTaacatTcc GcAtAAaATc aCtAtaaggt  52905
aCACTgaaAG gTGtGtGctg CAaGTctttA gaGCtTTaCt gttcagaGCt  52955
ttGtttttaC TGgTCAgaCa GAcagCtGtg ATCtttAcAt AaGtaAGGaA  53005
CACCccGcCg AtAGAAGATG tCAAaaGCac cacagTaAat gtcAGgCcAt  53055
agGCatTGTt AatGaaaAtg ctctcACAGG AgAgcTTaAa CAGtGaGGca  53105
ttgTCACAGt AAggaTGtgT aAtcAaggTt ctGCatgtgt tCAGTctGAC  53155
AGtCaGcCcg atCAgGaTGG CCACcagcAC AAcagcCaCA CCCCAgGcAG  53205
AgAAaatcAA cttgAtcacc AtTTtGttat TCATaAtaAG aGcaTAGcGc  53255
AGaGGataaC AGATaGCCAC ATAtCtgTCA TAgGCCATGa tcatCAAaAt  53305
GGTGtgagaa GTGgtGccaA acAagtgtgA GAAGAAtgcT TGgacCAcaC  53355
ActcgtaGtA GtcgATGaaG cgttccgAaG GaggCGTCaA gAtgtCagCg  53405
AGaAgccTtG GCAccaaaAC TGAgcttCcT AtgAtgTCgt tgattgGCAG  53455
GTTaCagAaa AgcAgaTACA TaGGCTgGTG tAGgctccTt TcAaTGccaA  53505
cGAGcactAa aATacccaca TTCataAtAA tgaTtAatAa aTAgAaAaTt  53555
AGtAAaAagG CaaAAAcAGG GtATaC

Side by Side Alignment*

6501321 ggacctccttatttctcagacagtagatgatagggttgcagagaggtgtg 6501370
>>>>>>> | | ||| ||       | ||  || ||||| ||||||  |  |  ||   >>>>>>>
0052756 gtatctctttggactgtacaccatatatgatggggttgaggccacttgga 0052805

6501371 accactgtgtag----atgacagacagcaccttgttgaggtccatggact 6501416
>>>>>>> || | |||| |     ||| | ||||||  | |||     ||   | ||| >>>>>>>
0052806 acta-tgtgaaacataatggcggacagcttcctgt---aatctgagtact 0052851

6501417 tg 6501418
>>>>>>>    >>>>>>>
0052852 ga 0052853

6501428 gggcggcaatagatgaagagagctg---ctgagtaaaagatgcccac--- 6501471
>>>>>>> ||   || ||  || |  | || |     |  | | || ||  | |     >>>>>>>
0052854 ggaaagcgatgcatcagaatagttaacattccgcataaaatcactataag 0052903

6501472 ---cactaccagatgggaggcacaggtggagaaggccttgc--------g 6501510
>>>>>>>    ||||   || || | |   || ||    |  || || |        | >>>>>>>
0052904 gtacactgaaaggtgtgtgctgcaagtctttagagctttactgttcagag 0052953

6501511 ccgggcagcagctgatggcatgcggagtacagccatcccaatag 6501554
>>>>>>> |   |      ||| |  ||  | ||   | |  |||   | |  >>>>>>>
0052954 ctttgtttttactggt--cagacagacagctgtgatctttacat 0052995

6501564 aggctagggacaccaagagtgttccacagaagatgacaatggc------- 6501606
>>>>>>> | |  ||| |||||  |      | | |||||||| |||  ||        >>>>>>>
0052996 aagtaaggaacaccccg-----ccgatagaagatgtcaaaagcaccacag 0053040

6501607 tgagatgaagtctaccagctctgtgag-ggccacatgggtacaggacaaa 6501655
>>>>>>> | |     || | |   ||  ||| |  |   |       |||||| |   >>>>>>>
0053041 taaatgtcaggccataggcattgttaatgaaaatgctctcacaggagagc 0053090

6501656 ttgagcagaggggagacatcacagaaaaattggttgaggacattggggc- 6501704
>>>>>>> || | ||| | ||     |||||| ||   ||  | |  |   |   ||  >>>>>>>
0053091 ttaaacagtgaggcattgtcacagtaaggatgtgtaatcaaggttctgca 0053140

6501705 ----cacagtaagacagactggcaatgcatgttgttttggccactgagac 6501750
>>>>>>>       ||||  ||||| | | |    || | ||     |||||    || >>>>>>>
0053141 tgtgttcagtctgacagtcagcccgatcaggatg-----gccaccagcac 0053185

6501751 aatcagcccacctagccatgaagacaaggctaagcccaaacatacttggg 6501800
>>>>>>> ||    | ||||   ||| | ||| ||    ||    |     | || |  >>>>>>>
0053186 aacagccacacc---ccaggcagagaaaatcaacttgatcaccattttgt 0053232

6501801 gcctcatgagcagtgggtagtgtagtgggcggcagatggccacatagcga 6501850
>>>>>>>    |||| |  || |  ||| | || ||    ||||| |||||||| |   >>>>>>>
0053233 tattcataataagagcatagcgcagaggataacagatagccacatatctg 0053282

6501851 tcataagccatggaagccaagagggtgcactctgtgcagatgaggactat 6501900
>>>>>>> ||||| ||||||     ||| | ||||      |||  |   |  |     >>>>>>>
0053283 tcataggccatgatcatcaaaatggtgtgagaagtggtgccaaacaagtg 0053332

6501901 aaagaagaagagttgtgtcatgcagagtgtgaagggaatgtggt------ 6501944
>>>>>>>   |||||||   |||   ||  ||      | ||   |||  |        >>>>>>>
0053333 tgagaagaatgcttggaccacacactcgtagtagtcgatgaagcgttccg 0053382

6501945 agggccccgtccatagacccacaagtaaggtgggcatggtgactga--ca 6501992
>>>>>>> | ||   |||| | |   |  | || |   | ||||     |||||     >>>>>>>
0053383 aaggaggcgtcaagatgtcagcgagaagccttggcaccaaaactgagctt 0053432

6501993 catagcacatctccaggcagctgaggttgcccaggaagaagtacatgggc 6502042
>>>>>>> | ||  |  ||        ||  ||||| |  |  |  |  ||||| ||| >>>>>>>
0053433 cctatgatgtcgttgattggc--aggttacagaaaagcagatacataggc 0053480

6502043 ttgtggagctctttgtgactgaagatgaggtagatgatgagtgtgttctc 6502092
>>>>>>> | ||| ||     | | | ||   | |||    |  ||       |||   >>>>>>>
0053481 tggtgtaggctcctttcaatgccaacgagcactaaaatacccacattcat 0053530

6502093 cacaagtgtcagcaggtaaagagtcaggaagacagc--aaatagggcatc 6502140
>>>>>>>  | ||   | |  |  || | | | || || |  ||  ||| |||| ||  >>>>>>>
0053531 aataatgattaataaatagaaaattagtaaaaaggcaaaaacagggtata 0053580

6502141 c 6502141
>>>>>>> | >>>>>>>
0053581 c 0053581

*Aligned Blocks with gaps <= 8 bases are merged for this display