Alignment of JT205425 and JH738588:68343-68690
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Matching bases are colored blue and capitalized. Light blue bases mark the boundaries of gaps in either sequence.
JT205425
acAGaATAGA CCTGGCtGAG TCttTaGGtC TcAGtCAGCT GCAGGTcAAa 50
ACgTGGTAtC AaAACaGaaG aATGAAaTGG AAaAAaATtG TATTGCAGGG 100
aGGaGGgCTG GAGTCCCCCA CcAAaCCgAA aGGgCGCCCa AAaAAGAACT 150
CCATaCCttc CgGtGAGCAa CTttCaGAGC AGGAGaGAga gaggacacgg 200
gaaaccgaga gcgcatcttc atcctcttca tcatcgtcat cctcttcatc 250
ttgttcaggc cagtctgaac ccagtcaaga ggaataaacg tgccactctc 300
cgtccatgtg aatccaactt acgctttaag gatgcacagg ctgacggcct 350
ctcatggatt gtttcttgtc gaaatcgacg ttttggcact taaaaactga 400
tccagacaag tcaagtggac cgatatgatg tattgtttcc attttgctta 450
aaaaaaaaga aagaaagaaa gaaagaaaga aaaaagaaac aaaaaaaaaa 500
aaaaaaaaaa aaa
American alligator.JH738588 :
AGgATAGACC TGGCgGAGTC ccTgGGcCTg AGcCAGCTGC AGGTgAAgAC 68392
cTGGTAcCAg AACcGgcGcA TGAAgTGGAA gAAgATaGTA agtgcgcggg 68442
gcccgggggg ggaggtggcg gcggggtagg cccagaccgg ctgggaggta 68492
ctcggcggcc gccccgcagc gtgggccggg gctgcgggcc tgggctccgg 68542
gccgcgtccc ccagcagccg ccgactcggc cttgcctctg ccttggcagg 68592
tgcTGCAGGG cGGgGGcCTG GAGTCCCCCA CtAAgCCcAA gGGcCGCCCc 68642
AAgAAGAACT CCATcCCcag CaGcGAGCAg CTcaCgGAGC AGGAGcGc
Side by Side Alignment*
00003 agaatagacctggctgagtctttaggtctcagtcagctgcaggtcaaaac 00052
>>>>> || ||||||||||| ||||| | || || || ||||||||||| || || >>>>>
68343 aggatagacctggcggagtccctgggcctgagccagctgcaggtgaagac 68392
00053 gtggtatcaaaacagaagaatgaaatggaaaaaaattgta 00092
>>>>> ||||| || ||| | | ||||| ||||| || || ||| >>>>>
68393 ctggtaccagaaccggcgcatgaagtggaagaagatagta 68432
00093 ttgcagggaggagggctggagtcccccaccaaaccgaaagggcgcccaaa 00142
>>>>> ||||||| || || |||||||||||||| || || || || ||||| || >>>>>
68595 ctgcagggcgggggcctggagtcccccactaagcccaagggccgccccaa 68644
00143 aaagaactccataccttccggtgagcaactttcagagcaggagaga 00188
>>>>> ||||||||||| || | | ||||| || | ||||||||| | >>>>>
68645 gaagaactccatccccagcagcgagcagctcacggagcaggagcgc 68690
*Aligned Blocks with gaps <= 8 bases are merged for this display