Alignment of MK252706 and chrUn:14494245-14495097
Click on links in the frame to the left to navigate through the alignment.
Matching bases are colored blue and capitalized. Light blue bases mark the boundaries of gaps in either sequence.
MK252706
atgcgatctg tagtgctttt gctcctcgga gctcaacttg cctatgctgg 50
aacacactct ctgaaatatg tctacactgg tgtgtctaga ggcattgact 100
tcccagagtt cacagcagtt ggtatggttg atgatgggca gtttatgtac 150
tttgacagca actcaatgaa agctgtgcca aagacagagt ggatcagaca 200
gaatgtggga gcagattact gggacagaga gactcagaac catatcggtc 250
attctcaggc attcaaagac agcatccaga tcgcaatgga acggttcaac 300
cagtcaaagg gtgttcacac ctggcagaat atgtacggct gtgagctgaa 350
tgatgatggc actactcaag gattctatCA GTATGccTAT GATGGAGAgG 400
ACTTtgTcag ccTgGAtaaG aAcACcctca ccTGGActGC TgCtAAtCct 450
CAaGCTGTCa TtACtAAACA cAAaTGGgag gctttagctg ttgcagaaca 500
aaacaaagga tatctggaga acacatgcat TGAGTGGCTG AAGAAGTatg 550
tggcttatgg caaagacact ctggagagaa aagtctctCC tcaGGTGTCT 600
CTgtTgCAGA AGgaTCCCTC CTCTCCAGTa ActTGtCAtG CTACAGGaTT 650
tTACCCCagt ggagtaacaa tcacctggca gaaaaatgga caagaccatg 700
atGAGGAtGT GGAtCTtGGt GAacTtCTtC CCAAtgAgGA CGGatCCTTt 750
CAGaggatga gcaccctcaa tgttggacct gatgagtgga agaacaacag 800
gttcagctgt gtggtggaac atcaggacaa aaccatcaga aagacagagg 850
atgacatcat tactaacttt gattctgttc ccattgccat cattgttgga 900
gctgttgctg ccgtcgtcct ggtgattgtc attggtgttg ttgggtattt 950
ggtgtatcag agaaagaaag gctttaaacc tgtcagcgcc tctgatgatg 1000
gttctaacag ctcagctcga acataa
Stickleback.chrUn (reverse strand):
CAGTATGgtT ATGATGGAGA aGACTTcaTa tcatTtGAcc tGcAgACaga 14495048
gcaaTGGAtc GCTcCaAAaC agCAgGCTGT CcTcACcAAA CAgAAgTGGg 14494998
atcatgacag agctctgaaa gcacacgaca agaactacct gactcatgtg 14494948
tgtccTGAGT GGCTGAAGAA GTtcttgaac tacgggagga gctctctgat 14494898
gagaaccggt aggatcacat gacctgatgt ccttccatgg acacgatgct 14494848
cataaaccat ctgttgtttc atagcaacat gtcagagaca cacagagacc 14494798
cactgtgtct cccacatttc tcccccctca cctccttctc tccttcactg 14494748
cactccctcc ctcacttccc ccctcacacc tgtccccact ctgtccctcc 14494698
atcctctttg tctctgctgt gtttctgtcc gtctcactgt ctctttactc 14494648
tctctcacac actgtcctcc tccccttcca atccgtctcc cccctcttca 14494598
tctgtttgtc tcccttcttt aatcaatgaa actttaaaga catttcattc 14494548
ttttagtaaa cttaaataca catagttgag tgttaaagag gcattttaaa 14494498
tacatcaaag atgaatgata ttaatacact aaatatcagt gataataata 14494448
aagatgtaac ctgtccctct cttctgtctc cagagcgtCC ctcGGTGTCT 14494398
CTccTcCAGA AGacTCCCTC CTCTCCAGTc AgcTGcCAcG CTACAGGtTT 14494348
cTACCCCcac agagccgccc tcttctggag gaaagatgga gagcagctcc 14494298
atGAGGAcGT GGAcCTcGGa GAgaTcCTcC CCAAccAcGA CGGgaCCTTc 14494248
CAG
Side by Side Alignment*
00000379 cagtatgcctatgatggagaggactttgtcagcctggataagaacaccct 00000428
<<<<<<<< ||||||| ||||||||||| ||||| | | || | | || <<<<<<<<
14495097 cagtatggttatgatggagaagacttcatatcatttgacctgcagacaga 14495048
00000429 cacctggactgctgctaatcctcaagctgtcattactaaacacaaatgg 00000477
<<<<<<<< |||| ||| | || | || |||||| | || ||||| || ||| <<<<<<<<
14495047 gcaatggatcgctccaaaacagcaggctgtcctcaccaaacagaagtgg 14494999
00000531 tgagtggctgaagaagt 00000547
<<<<<<<< ||||||||||||||||| <<<<<<<<
14494942 tgagtggctgaagaagt 14494926
00000589 cctcaggtgtctctgttgcagaaggatccctcctctccagtaacttgtca 00000638
<<<<<<<< || ||||||||| | |||||| ||||||||||||||| | || || <<<<<<<<
14494409 ccctcggtgtctctcctccagaagactccctcctctccagtcagctgcca 14494360
00000639 tgctacaggattttacccc 00000657
<<<<<<<< |||||||| || |||||| <<<<<<<<
14494359 cgctacaggtttctacccc 14494341
00000703 gaggatgtggatcttggtgaacttcttcccaatgaggacggatcctttca 00000752
<<<<<<<< ||||| ||||| || || || | || ||||| | ||||| |||| || <<<<<<<<
14494295 gaggacgtggacctcggagagatcctccccaaccacgacgggaccttcca 14494246
00000753 g 00000753
<<<<<<<< | <<<<<<<<
14494245 g 14494245
*Aligned Blocks with gaps <= 8 bases are merged for this display