Alignment of BT072500 and chrXIII:1555010-1556328

BT072500

aagagcaagc aacaactcaa caaaatggag ctggaggcta tgaccagata  50
caccagtccg gtgaacccgg cagtcttccc tcacctcact gtggttctac  100
tggctatcgg catgttcttc actgcgtggt tctttgtgta tccttccgtg  150
gccgtctgtc atcatagtaa cccgtttctt ttgaccgcgg gtcgtaaccc  200
gtttattttg accgcgggtc gtaacccgtt tcttttgacc gcgggtcgta  250
acccgtttct tttgaccgcg ggtcgtaacc cgtttctttt gaccacgggt  300
cgtggccgtc tttgtacccc tattgtgcaa gtttgtggca gaacaagggg  350
gatatgtatt ctcatagaac atgaatgaat ggattttaca ctacttttgg  400
attttaagcc tcatccaaaa taggtatttt gcaattatct tagcgaccgt  450
tcaagcaaga atcgaaacat aattgtaagt atatgagaaa cccccccccc  500
ccccatttaa aaaaatgttt gtttagaagt agtaacttaa atctaggctg  550
ttgaattgtc gcgtcagtgt gtggtgttct ggaatcagtg ttcttcaaac  600
cttgtccagg ggagtggggg ggggggggca tctgttccag cccagtactc  650
taggattgaa gaacattgat tataaaaaca gcttaaggta tagtgtacag  700
ggcattcata aagtattcag acccgttcga taatttaaca ttattacgtt  750
agaCTtaTTC CAtTGATCAT tCTTGAGATG TTTCTACAAC TTGATTtGaG  800
TCCACCTGTG gTAAATTCaa TTGAcTGGtC ATGATTtgGA AAGGCACACA  850
CCTGTCTATA aggtctcaca gttcatgTCA GAGCAaAAAC CAAGCAATGA  900
gGTCaAAGGA ATTgTgcGTA GAgCcCCGAG ACAGtATTGT gtTCAAGGCa  950
CAGATCTGGg gAAGGGTACc aaaaagtgtg catcattaga ggccactatg  1000
ttcatgggga CCTtCATCAT tCttAAATGG AgGAcGTTTG GAACCAtCAa  1050
GACTCTTCCT AGAGcTGGCt GCCCgGCCAa ACTGAGCaAT CtGGgGAGAA  1100
tGGCCTTgGT CAGtGAGGTG ACCAaGAACC tGATGGtCAC TtTGACAGAG  1150
CTCtAGaGTT ccTCTgTGgA GAtgGGAGAA CCTTCCAGAA GGACAACcAT  1200
gTCTGCAgCA CTCCACcAAT CAGGaCTtTa TGGCtAGACG GAAGCCACTC  1250
CTCAGTAAAA ggcacatgac agcccacttg gAGTTTGCcA AAAgGCACCT  1300
aAAGACTCTC AGACCgTGAG AAACAAgATT CTCctGTCTG ATtaaAAACA  1350
AGATTGAACT CTTTgGCCTG AATGCCAAGC GTtacatctg gaggaaacct  1400
gccACCATCC CTgCgGTGAA GCgTGGTGGT GGCAGCATCA cGCTGTGGGa  1450
ATGTTTTTtA GCGGcAGGAA CaGGTCAGGA TcGAGcGAAA GATGAAcagA  1500
GCAAaGTACA GAGAgATaCT tgATGAAAAC cTGCTCaAgA GCGCTCaGGA  1550
CCTCAGACTG GGGtGAaGaT TCAcCTTCCA ACgGGACAAC GACCCtAAGC  1600
ACACAGCCAA GAcAACgcAG gAGgaGCTTC GGgACAggTC TCacTGTCCT  1650
TGAGTGGCCC AGCCAGAGCC CAgggtttat AACCgGATTG AACATCTCTG  1700
GAGAGAcCTG AAAATaGCTG TGCAgCGACt CTCCtcATCC AACCTGAcaG  1750
AtCTTGAGAG AAGAATGGGA GAAACTcCCC AaAtAcAGGT GTGCaAgctT  1800
Gtagcgtcat acccaagcag acGAGGCTGT AATcGCTtCg AAAGGTGCTT  1850
CAACAAAGTA CTGAGtAAAG GgTcTGAATA CTTATGTAaA TGTGatccgt  1900
TTTTATTTTT AAtacatttc taaaactgtt attgCTTTGT CATTATaGGG  1950
TaGTgtgtgt gtgtgtgTGT GTGTAGAttg atggggggga aactattgaa  2000
tccacTTTTa GAATAAGGCT GTAACATAAa tatgtggtta aaggggtctg  2050
agtacagtac tttccaaatg tgctgtacat ggattgactg agatttgaca  2100
tcctgaacaa agactttcag tagactaaat gtatttgacg agatgagttc  2150
atgcagaatt cactttatta ttttttttcc ggtccaaaat aaaattccat  2200
tttgagacaa actgacctgt ttgtttagca ccttaactct ctcccagcta  2250
cgaggtgacg tccaccaaat acaccagaga cgtgtacaaa gagctgctca  2300
tctccctggt ggcgtctctc ttcatgggct tcggagtgct gtttctgtta  2350
ctgtgggtcg gcatctatgt ctgacaggta aggaagtgat catgacgact  2400
tgatcggttt tgtgccatct taactcatct ttaaaatgtg gctgcatata  2450
gcctagcggt tagaacgttg ggacagtaac tgaaaggctg gttttaaatc  2500
cccgagccgg caaggtggaa caatctgctg ttcatccctc gagtaaggcc  2550
gttaacccca acaactggtc cccgggcgac gtttttttta aggcagcccc  2600
ctaacctctg attcagaagg gttgggttga atgcattgtt gtacaactga  2650
ctaggtatcc ttgtttgtga ttgctgcaaa aatgaatggc tcttttgagg  2700
acattaacgt tttctgaatc tgacaatgac ccataagagt tggcaaaatg  2750
gtacatgtct atctgggtcc aggctaatgg aatggagact tgtgcacact  2800
caacaataca aattattaga cccattttta aacagagact caagtgatat  2850
gacgttatca taaacagtgg cacaaacaaa gagaatgtgt gacacaagag  2900
gttgcaaaaa agcacaccgg taggctacag agattgcggc tctctctagc  2950
gacgtgctag ctgggcaaca catctcaact agctgtgcct cttgcgtcgt  3000
actaatcttt gttcctgtca taaatcaccc ttatggtcat gtcatttccc  3050
tagatctacc gttttaaaag ttaactcatt caccatagtg ttttctctct  3100
gtgttctgtt tacagattgt ttatattgat acagaagaac attccagtgg  3150
aacaagagga ggacatgaaa tgggctccac tacaagatgg ttatggattg  3200
gattgcactg ataagacagt ggggactgtg gattggggtg gcctttcaat  3250
aaataaagag ccatttgtac aaaactgcaa agtaaaaaaa aaaaaaaaaa  3300
aaaaaaaaaa aaaga

Stickleback.chrXIII :

CTgtTTCCAc TGATCATcCT TGAGATGTTT CTACAACTTG ATTgGcGTCC  1555059
ACCTGTGcTA AATTCcgTTG AtTGGaCATG ATTgaGAAAG GCACACACCT  1555109
GTCTATAtaa ggtatcacag tggacagtgc ataTCAGAGC AtAAACCAAG  1555159
CAATGAaGTC cAAGGAATTa TctGTAGAcC tCCGAGACAG aATTGTaTCA  1555209
AGGCtCAGAT CTGGcaAAGG GTACagaaag atttctacag cattgaaagt  1555259
cccaatgagc agtggCCTcC ATCATcCagA AATGGAaGAa GTTTGGAACC  1555309
AcCAgGACTC TTCCTAGAGt TGGCcGCCCa GCCAgACTGA GCgATCgGGa  1555359
GAGAAgGGCC TTaGTCAGgG AGGTGACCAg GAACCcGATG GgCACTcTGA  1555409
CAGAGCTCcA GcGTTgtTCT aTGaAGAgaG GAGAACCTTC CAGAAGGACA  1555459
ACaATcTCTG CAaCACTCCA CaAATCAGGc CTgTtTGgta gagtgGCcAG  1555509
ACGGAAGCCA CTCCTCAGTA AAAAGTTTGC aAAAAaGCAC CTgAAgGACT  1555559
CTCAGACCaT GAGAAACAAa ATTCTCtgGT CTGATgAAAC aAAGATTGAA  1555609
CTCTTTtGCC TGAATGCCAA GCGTcatgtc tggaagaaac caggcactgc  1555659
tcatcacctg gccaatACCA TCCCTaCaGT GAAGCaTGGT GGTGGCAGCA  1555709
TCAtGCTGTG GGgATGTTTT TcAGCGGgAG GAACtGGgag acttgTCAGG  1555759
ATtGAGgGAA AGATGAAtgc AGCAAtGTAC AGAGAcATcC TccATGAAAA  1555809
CaTGCTCcAa AGCGCTCtGG ACCTCAGACT GGGGcGAcGg TTCAtCTTCC  1555859
AACaGGACAA CGACCCgAAG CACACAGCCA AGAgAACaaA GcAGtgGCTT  1555909
CGGcACAacT CTgtgaaTGT CCTTGAGTGG CCCAGCCAGA GCCCtgactt  1555959
gAACCcGATT GAACATCTCT GGAGAGAtCT GAAAATgGCT GTGCAcCGAC  1556009
gCTCCatATC CAACCTGAtt GAaCTTGAGA Ggttctgcaa agAAGAATGG  1556059
GAGAAACTgC CCAgAaAtAG GTGTGCcAcg cTtgtggaat catacccaat  1556109
aagacttGAG GCTGTAATtG CTgCcAAAGG TGCTTCAACA AAGTACTGAG  1556159
cAAAGGcTgT GAATACTTAT GTAcATGTta tgttttcgtt cTTTTATTTT  1556209
TAAcagattt gcaaaaattt gcaaaaaaca gttttcaCTT TGTCATTATG  1556259
GGTtGTTGTG TGTAGAatgt tgaggaaaat aatgaattta atccaTTTTg  1556309
GAATAAGGCT GTAACATAA

Side by Side Alignment*

0000754 cttattccattgatcattcttgagatgtttctacaacttgatttgagtcc 0000803
>>>>>>> ||  ||||| ||||||| ||||||||||||||||||||||||| | |||| >>>>>>>
1555010 ctgtttccactgatcatccttgagatgtttctacaacttgattggcgtcc 1555059

0000804 acctgtggtaaattcaattgactggtcatgatttggaaaggcacacacct 0000853
>>>>>>> ||||||| |||||||  |||| ||| |||||||  ||||||||||||||| >>>>>>>
1555060 acctgtgctaaattccgttgattggacatgattgagaaaggcacacacct 1555109

0000854 gtctata 0000860
>>>>>>> ||||||| >>>>>>>
1555110 gtctata 1555116

0000878 tcagagcaaaaaccaagcaatgaggtcaaaggaattgtgcgtagagcccc 0000927
>>>>>>> |||||||| |||||||||||||| ||| |||||||| |  ||||| | || >>>>>>>
1555143 tcagagcataaaccaagcaatgaagtccaaggaattatctgtagacctcc 1555192

0000928 gagacagtattgt 0000940
>>>>>>> ||||||| ||||| >>>>>>>
1555193 gagacagaattgt 1555205

0000943 tcaaggcacagatctggggaagggtac 0000969
>>>>>>> ||||||| |||||||||  |||||||| >>>>>>>
1555207 tcaaggctcagatctggcaaagggtac 1555233

0001011 ccttcatcattcttaaatggaggacgtttggaaccatcaagactcttcct 0001060
>>>>>>> ||| |||||| |  ||||||| || ||||||||||| || |||||||||| >>>>>>>
1555275 cctccatcatccagaaatggaagaagtttggaaccaccaggactcttcct 1555324

0001061 agagctggctgcccggccaaactgagcaatctggggagaatggccttggt 0001110
>>>>>>> |||| |||| |||| |||| ||||||| ||| || ||||| |||||| || >>>>>>>
1555325 agagttggccgcccagccagactgagcgatcgggagagaagggccttagt 1555374

0001111 cagtgaggtgaccaagaacctgatggtcactttgacagagctctagagtt 0001160
>>>>>>> ||| |||||||||| ||||| ||||| |||| ||||||||||| || ||| >>>>>>>
1555375 cagggaggtgaccaggaacccgatgggcactctgacagagctccagcgtt 1555424

0001161 cctctgtggagatgggagaaccttccagaaggacaaccatgtctgcagca 0001210
>>>>>>>   ||| || |||  ||||||||||||||||||||||| || |||||| || >>>>>>>
1555425 gttctatgaagagaggagaaccttccagaaggacaacaatctctgcaaca 1555474

0001211 ctccaccaatcaggactttatg--------gctagacggaagccactcct 0001252
>>>>>>> |||||| ||||||| || | ||        || ||||||||||||||||| >>>>>>>
1555475 ctccacaaatcaggcctgtttggtagagtggccagacggaagccactcct 1555524

0001253 cagtaaaa 0001260
>>>>>>> |||||||| >>>>>>>
1555525 cagtaaaa 1555532

0001282 agtttgccaaaaggcacctaaa-gactctcagaccgtgagaaacaagatt 0001330
>>>>>>> ||||||| |||| |||||| || |||||||||||| |||||||||| ||| >>>>>>>
1555533 agtttgcaaaaaagcacctgaaggactctcagaccatgagaaacaaaatt 1555582

0001331 ctcctgtctgat 0001342
>>>>>>> |||  ||||||| >>>>>>>
1555583 ctctggtctgat 1555594

0001346 aaac-aagattgaactctttggcctgaatgccaagcgt 0001382
>>>>>>> |||| ||||||||||||||| ||||||||||||||||| >>>>>>>
1555596 aaacaaagattgaactcttttgcctgaatgccaagcgt 1555633

0001404 accatccctgcggtgaagcgtggtggtggcagcatcacgctgtgggaatg 0001453
>>>>>>> ||||||||| | ||||||| ||||||||||||||||| |||||||| ||| >>>>>>>
1555676 accatccctacagtgaagcatggtggtggcagcatcatgctgtggggatg 1555725

0001454 ttttttagcggcaggaacagg--------tcaggatcgagcgaaagatga 0001495
>>>>>>> ||||| ||||| |||||| ||        ||||||| ||| ||||||||| >>>>>>>
1555726 tttttcagcgggaggaactgggagacttgtcaggattgagggaaagatga 1555775

0001496 acagagcaaagtacagagagatacttgatgaaaacctgctcaagagcgct 0001545
>>>>>>> |   ||||| ||||||||| || ||  |||||||| ||||| | |||||| >>>>>>>
1555776 atgcagcaatgtacagagacatcctccatgaaaacatgctccaaagcgct 1555825

0001546 caggacctcagactggggtgaagattcaccttccaacgggacaacgaccc 0001595
>>>>>>> | |||||||||||||||| || | |||| |||||||| |||||||||||| >>>>>>>
1555826 ctggacctcagactggggcgacggttcatcttccaacaggacaacgaccc 1555875

0001596 taagcacacagccaagacaacgcaggaggagcttcgggacaggtctc 0001642
>>>>>>>  |||||||||||||||| |||  || ||  ||||||| |||  |||  >>>>>>>
1555876 gaagcacacagccaagagaacaaagcagtggcttcggcacaactctg 1555922

0001645 tgtccttgagtggcccagccagagccca 0001672
>>>>>>> |||||||||||||||||||||||||||  >>>>>>>
1555927 tgtccttgagtggcccagccagagccct 1555954

0001681 aaccggattgaacatctctggagagacctgaaaatagctgtgcagcgact 0001730
>>>>>>> |||| ||||||||||||||||||||| |||||||| |||||||| ||||  >>>>>>>
1555961 aacccgattgaacatctctggagagatctgaaaatggctgtgcaccgacg 1556010

0001731 ctcctcatccaacctgacagatcttgagag 0001760
>>>>>>> ||||  |||||||||||  || |||||||| >>>>>>>
1556011 ctccatatccaacctgattgaacttgagag 1556040

0001761 aagaatgggagaaactccccaaatacaggtgtgcaagcttg 0001801
>>>>>>> |||||||||||||||| |||| | | |||||||| |   |  >>>>>>>
1556052 aagaatgggagaaactgcccagaaataggtgtgccacgctt 1556092

0001823 gaggctgtaatcgcttcgaaaggtgcttcaacaaagtactgagtaaaggg 0001872
>>>>>>> ||||||||||| ||| | ||||||||||||||||||||||||| |||||  >>>>>>>
1556117 gaggctgtaattgctgccaaaggtgcttcaacaaagtactgagcaaaggc 1556166

0001873 tctgaatacttatgtaaatgtg 0001894
>>>>>>> | |||||||||||||| ||||  >>>>>>>
1556167 tgtgaatacttatgtacatgtt 1556188

0001901 ttttatttttaa 0001912
>>>>>>> |||||||||||| >>>>>>>
1556201 ttttatttttaa 1556212

0001935 ctttgtcattatagggtagt 0001954
>>>>>>> |||||||||||| |||| || >>>>>>>
1556247 ctttgtcattat-gggttgt 1556265

0001968 tgtgtgtaga 0001977
>>>>>>> |||||||||| >>>>>>>
1556266 tgtgtgtaga 1556275

0002006 ttttagaataaggctgtaacataa 0002029
>>>>>>> |||| ||||||||||||||||||| >>>>>>>
1556305 ttttggaataaggctgtaacataa 1556328

*Aligned Blocks with gaps <= 8 bases are merged for this display