Alignment of JX567676 and chrUn:50605630-50607477
Click on links in the frame to the left to navigate through the alignment.
Matching bases are colored blue and capitalized. Light blue bases mark the boundaries of gaps in either sequence.
JX567676
GTGctTCACT CtaTGcAGTA TTTCTACACg GCGTCgTCTG GAcTCtCAAc 50
CTTCCCAGAG TTTGTttcTG TTGGGaTGgT GGATGgAGTT cAGATtaact 100
ACTATGACAG cAACACCcaG AGAGtAGtcC CCAaACAGGA CTtGATGgag 150
cGgtTCACCa tcagagagGA cCCcgAcTAC ctGgAGaGGa ACACTGgaAT 200
CaTTcaGGGt AcCCAGCAGa gCTtCAAAGc CAACATTGgg ACtGCcAAgC 250
AgCGCTTtAA CCAgACaGGA GGTacccact tatatcagtg gatgtatggt 300
tgtgagtggg atgatgagga tgattctact gatggttatg accaggatgg 350
ttatgatgga gaggacttca tatcgttgga cctgaagacc atgacctggg 400
tcgctgcagt acctcaggct ttcagcacca aacagagatg ggatggggac 450
agagctttca atgaacagca gaagcactat tacaccgtgg agtgtgttga 500
ttggctgaag aaatacctgt cctatgggaa gagaactctg cagagaacAG 550
AGCGTCCgcg GGTGTCTCTg CTCCAGAgGA gcCCCTCCTC cCCAGTggtg 600
TGCCAtGCTA CAGGcTTCTA CCCtGACAGg GtgGtggTgT TCTGGAcGAg 650
AGAcGGccAG GAGCTCCATG AGcAgGTGGA CCcCGGgGAG gTCCTCCCCA 700
ACCACGACGG GACCTTCCAG gTcAGcGTgG ACCTcAAcCT caCggCCGTC 750
CCacagGAgG ACTGGgGGAG GTACGAgTGT GTGgTCCAGC TGaaaGGCat 800
cgaggacatc tccacccccc tggacctcat caggaccaac tgg
Stickleback.chrUn :
GTGacTCACT CgcTGaAGTA TTTCTACACt GCGTCcTCTG GAgTCcCAAa 50605679
CTTCCCAGAG TTTGTgatTG TTGGGcTGcT GGATGaAGTT gAGATgtttc 50605729
ACTATGACAG tAACACCagG AGAGcAGaaC CCAgACAGGA CTgGATGagc 50605779
aGagTCACag aggacGAtCC tcAgTACtgG aAGcGGtACA CTGagATCcT 50605829
TatGGGcAgC CAGCAGgtCT aCAAAGgCAA CATTGaaACa GCaAAaCAaC 50605879
GCTTcAACCA aACtGGAGGT ttgtttatgt ttcacacttt ttgtttatat 50605929
ttgcatcctt tatgttatta gtacataaac acacacacac acacacacac 50605979
acacacacac acacacacac acacacacac acacacacac acacacacac 50606029
acagtaaatt aaacagtctg agatcttttc ttgactgaaa catgttctgc 50606079
ttccagttcc taaatataag tatataaaca caatgaatac ttttccgtgt 50606129
tgttcaggat gaagaagatt tcctctcatc ctgattagaa ctccagctta 50606179
gattagatga gctttacttg agctcaggga gtcgatgctt cagtatttca 50606229
ttccaggttt tatcagatga cgtccaacat gttctagttg aggttcctca 50606279
ctgagacgac ttcttcctct tgtctgtttg aaatggtgat gaatgaaata 50606329
ctgctcagtg ttgttcacac tgaagaagca cttccaaggt ttcatcagcc 50606379
tctctgacat tttacagtgt gaacaattca tggattcatt agaaatagtt 50606429
attacatcat ctgcaaagac aagaataatt agtttgagcc caaaatctgg 50606479
agtatgatac agatgagagt taatgaacta aagtggactg cagtgagttt 50606529
agaacaaaca ttcaggatat ttagtgttga aacattgaat ctattagtcg 50606579
atgaacagaa atgaatcaac atgaatgttg atatcagaga ggactgaggt 50606629
ctctatccag cacaaaggtt ttctctctct ctttttctct ctctctttct 50606679
ctcccttccc gagagggttt gcgtcgatct tttttgatgn nnnnnnnnnn 50606729
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 50606779
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 50606829
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 50606879
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 50606929
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 50606979
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 50607029
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 50607079
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnatacacat agttgagtgt 50607129
taagaggcat tttaaataca ttcaaagatg aatgatatta atacactaaa 50607179
tatcagtgat aataataaag atgtaacctg tccctctctt ctgtctccAG 50607229
AGCGTCCctc GGTGTCTCTc CTCCAGAaGA ctCCCTCCTC tCCAGTcagc 50607279
TGCCAcGCTA CAGGtTTCTA CCCcGACAGa GccGcccTcT TCTGGAgGAa 50607329
AGAtGGagAG GAGCTCCATG AGgAcGTGGA CCtCGGaGAG aTCCTCCCCA 50607379
ACCACGACGG GACCTTCCAG aTgAGgGTtG ACCTgAAaCT gtCctCCGTC 50607429
CCtgctGAaG ACTGGaGGAG GTACGAcTGT GTGtTCCAGC TGtctGGt
Side by Side Alignment*
00000001 gtgcttcactctatgcagtatttctacacggcgtcgtctggactctcaac 00000050
>>>>>>>> ||| |||||| || ||||||||||||| ||||| |||||| || ||| >>>>>>>>
50605630 gtgactcactcgctgaagtatttctacactgcgtcctctggagtcccaaa 50605679
00000051 cttcccagagtttgtttctgttgggatggtggatggagttcagattaact 00000100
>>>>>>>> ||||||||||||||| ||||||| || |||||| |||| |||| >>>>>>>>
50605680 cttcccagagtttgtgattgttgggctgctggatgaagttgagatgtttc 50605729
00000101 actatgacagcaacacccagagagtagtccccaaacaggacttgatggag 00000150
>>>>>>>> |||||||||| |||||| ||||| || |||| |||||||| |||| >>>>>>>>
50605730 actatgacagtaacaccaggagagcagaacccagacaggactggatgagc 50605779
00000151 cggttcacc 00000159
>>>>>>>> | |||| >>>>>>>>
50605780 agagtcaca 50605788
00000169 gaccccgactacctggagaggaacactggaatcattcagggtacccagca 00000218
>>>>>>>> || || | ||| | || || |||||| ||| || ||| | |||||| >>>>>>>>
50605795 gatcctcagtactggaagcggtacactgagatccttatgggcagccagca 50605844
00000219 gagcttcaaagccaacattgggactgccaagcagcgctttaaccagacag 00000268
>>>>>>>> | || ||||| |||||||| || || || || ||||| ||||| || | >>>>>>>>
50605845 ggtctacaaaggcaacattgaaacagcaaaacaacgcttcaaccaaactg 50605894
00000269 gaggt 00000273
>>>>>>>> ||||| >>>>>>>>
50605895 gaggt 50605899
00000549 agagcgtccgcgggtgtctctgctccagaggagcccctcctccccagtgg 00000598
>>>>>>>> ||||||||| ||||||||| ||||||| || |||||||| ||||| >>>>>>>>
50607228 agagcgtccctcggtgtctctcctccagaagactccctcctctccagtca 50607277
00000599 tgtgccatgctacaggcttctaccctgacagggtggtggtgttctggacg 00000648
>>>>>>>> ||||| |||||||| |||||||| ||||| | | | ||||||| | >>>>>>>>
50607278 gctgccacgctacaggtttctaccccgacagagccgccctcttctggagg 50607327
00000649 agagacggccaggagctccatgagcaggtggaccccggggaggtcctccc 00000698
>>>>>>>> | ||| || |||||||||||||| | ||||||| ||| ||| ||||||| >>>>>>>>
50607328 aaagatggagaggagctccatgaggacgtggacctcggagagatcctccc 50607377
00000699 caaccacgacgggaccttccaggtcagcgtggacctcaacctcacggccg 00000748
>>>>>>>> |||||||||||||||||||||| | || || ||||| || || | ||| >>>>>>>>
50607378 caaccacgacgggaccttccagatgagggttgacctgaaactgtcctccg 50607427
00000749 tcccacaggaggactgggggaggtacgagtgtgtggtccagctgaaaggc 00000798
>>>>>>>> |||| || |||||| |||||||||| |||||| |||||||| || >>>>>>>>
50607428 tccctgctgaagactggaggaggtacgactgtgtgttccagctgtctggt 50607477
*Aligned Blocks with gaps <= 8 bases are merged for this display