Alignment of JU717318 and GL192418.1:3060630-3060967
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Matching bases are colored blue and capitalized. Light blue bases mark the boundaries of gaps in either sequence.
JU717318
aaaaaataCA ATGGGATAgG TTTATGCTGA GAAATGCAGC AATAAATACA 50
GTGGAAGAaa ACAGAGCAAt TCTACATcGA TACATTGGCA CAAACAGGAA 100
GAGCaAagGC ACCcCCaGac ttTGAcgtct gcaggccagt tttgtacatg 150
ctccttttga aacaccactc ggaaaagatc tcgtcgcctt aggtaaaaaa 200
TaAGTACACA TATAATCaCA AATGCACACt GATCAGGACT TTATTTAAAA 250
ATTAGCAAAC AATACTGTAG AaACATTGAT ATGTAAATTT CTAAAAcGCT 300
GCATCTTAAA TTTAGTTGGC AAAGACCACA TtTAGCTAtA AGCAtgttta 350
gtcttccatg tagaaacaag atactaa
Panda.GL192418.1 (reverse strand):
CAATGGGATA aGTTTATGCT GAGAAATGCA GCAATAAATA CAGTGGAAGA 3060918
gcACAGAGCA AcTCTACATt GATACATTGG CACAAACAGG AAGAGCgAgc 3060868
GCACCaCCcG gaccTGAaca tctgggggcc cattttgtac gcgctccttt 3060818
agaaacactg ctccgaaaag atcctgtcag ttgagggaag agaaTgAGTA 3060768
CACATATAAT CgCAAATGCA CACgGATCAG GACTTTATTT AAAAATTAGC 3060718
AAACAATACT GTAGAgACAT TGATATGTAA ATTTCTAAAA tGCTGCATCT 3060668
TAAATTTAGT TGGCAAAGAC CACATgTAGC TAgAAGCA
Side by Side Alignment*
0000009 caatgggataggtttatgctgagaaatgcagcaataaatacagtggaaga 0000058
<<<<<<< |||||||||| ||||||||||||||||||||||||||||||||||||||| <<<<<<<
3060967 caatgggataagtttatgctgagaaatgcagcaataaatacagtggaaga 3060918
0000059 aaacagagcaattctacatcgatacattggcacaaacaggaagagcaaag 0000108
<<<<<<< ||||||||| ||||||| |||||||||||||||||||||||||| | <<<<<<<
3060917 gcacagagcaactctacattgatacattggcacaaacaggaagagcgagc 3060868
0000109 gcacccccagactttga 0000125
<<<<<<< ||||| || | ||| <<<<<<<
3060867 gcaccacccggacctga 3060851
0000201 taagtacacatataatcacaaatgcacactgatcaggactttatttaaaa 0000250
<<<<<<< | ||||||||||||||| ||||||||||| |||||||||||||||||||| <<<<<<<
3060773 tgagtacacatataatcgcaaatgcacacggatcaggactttatttaaaa 3060724
0000251 attagcaaacaatactgtagaaacattgatatgtaaatttctaaaacgct 0000300
<<<<<<< ||||||||||||||||||||| |||||||||||||||||||||||| ||| <<<<<<<
3060723 attagcaaacaatactgtagagacattgatatgtaaatttctaaaatgct 3060674
0000301 gcatcttaaatttagttggcaaagaccacatttagctataagca 0000344
<<<<<<< ||||||||||||||||||||||||||||||| |||||| ||||| <<<<<<<
3060673 gcatcttaaatttagttggcaaagaccacatgtagctagaagca 3060630
*Aligned Blocks with gaps <= 8 bases are merged for this display