Alignment of HP149269 and chrUn:29994393-29994908
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Matching bases are colored blue and capitalized. Light blue bases mark the boundaries of gaps in either sequence.
HP149269
ttagatccat ccccacacca ttgttagtta tccacctcga acaccttatt 50
gagccaataa ctgccatgat aAATCaGTCT cTtcTttCtG GcataGTgCC 100
ggtcTCaTTC AAacatGCTG TcgTTttACC TCTgtTaAAa AAgCCaAaTt 150
TatCcCCtGA aGaGcTGagc AAtTtTAGAC CTgTgTCaAA TCTcCCaTTC 200
CTtTCcAAGA TttTaGAaAA AgtgGTCctt ttgCAATTGa aaaaacactt 250
gacaaagaac aaccttttag ataacTTtCA GTCtGcATAT aGAGaattTC 300
ACAacACAGA AACtGCtCTt cTGAAAgTTc aaAATGAcCT caTAtgTGCc 350
gCaGACaAAG GcCatAcaTC TaTTCTTGct TTGtTaGACC TaAGcGCaGC 400
ATTTGAcACa ATtGAtCAca GTATttTGTT agAaAGAtTG tctaaaacgt 450
ttggattatc aggggttgtc ttaaagtggt tttcgtctta tgtcagtggg 500
cgtactcagt gtataatgat agacaaccaa acttctcctg tatttaacct 550
taactatGGA GTtCCcCAAG GaTCTGTAtT aGGACCTgta tttacaccat 600
atatacaaaa ccattaggca cactaattca aagttttgat ttatgttatc 650
acatgtacgc tgacgacacc caagtgtact cctcttctcg tccagaaaac 700
tttcctacct tagtaaagaa gtttgaaagt tgtatatcac atagttaaaa 750
attgatgatt
Stickleback.chrUn (reverse strand):
AATCtGTCTt TgtTgaCaGG acatGTaCCa cagTCcTTCA AggtaGCTGT 29994859
aaTTaaACCT CTtcTtAAgA AaCCtAcTcT tgCtCCaGAg GtGtTGgctA 29994809
AcTaTAGACC TaTcTCtAAT CTtCCcTTCC TcTCtAAGAT ccTtGAgAAA 29994759
tcaGTCgcaa atCAATTatg tgactttcta caaaacaatg ctttgttcga 29994709
ggatTTcCAG TCaGgATATc GAGcgcaTCA CAgtACAGAA ACaGCaCTgg 29994659
TGAAAaTTac gAATGAtCTt cTActTGCat CgGACcAAGG aCtcAtcTCT 29994609
tTTCTTGtcT TGcTgGACCT cAGtGCcGCA TTTGAtACcA TaGAcCAttG 29994559
TATccTGTTg cAgAGAcTag aacatttaat tggtaccaaa ggaactgcac 29994509
tcacctggtt taaatcctac ttatcggatc aatcccagtt tgtgcttgta 29994459
aacggtgaat cctcaaagac caccaatgtt ggtcacGGAG TcCCaCAAGG 29994409
tTCTGTAcTt GGACCg
Side by Side Alignment*
00000072 aatcagtctcttctttctggcatagtgccggtctcattcaaacatgctgt 00000121
<<<<<<<< |||| |||| | | | || || || || ||||| ||||| <<<<<<<<
29994908 aatctgtctttgttgacaggacatgtaccacagtccttcaaggtagctgt 29994859
00000122 cgttttacctctgttaaaaaagccaaatttatcccctgaagagctgagca 00000171
<<<<<<<< || |||||| | || || || | | | | || || | | || | <<<<<<<<
29994858 aattaaacctcttcttaagaaacctactcttgctccagaggtgttggcta 29994809
00000172 attttagacctgtgtcaaatctcccattcctttccaagattttagaaaaa 00000221
<<<<<<<< | | ||||||| | || ||||| || ||||| || ||||| | || ||| <<<<<<<<
29994808 actatagacctatctctaatcttcccttcctctctaagatccttgagaaa 29994759
00000222 gtggtccttttgcaattg 00000239
<<<<<<<< ||| ||||| <<<<<<<<
29994758 tcagtcgcaaatcaatta 29994741
00000276 tttcagtctgcatatagagaatttcacaacacagaaactgctcttctgaa 00000325
<<<<<<<< || ||||| | |||| ||| ||||| |||||||| || || |||| <<<<<<<<
29994704 ttccagtcaggatatcgagcgcatcacagtacagaaacagcactggtgaa 29994655
00000326 agttcaaaatgacctcatatgtgccgcagacaaaggccatacatctattc 00000375
<<<<<<<< | || ||||| || || ||| | ||| |||| | | ||| ||| <<<<<<<<
29994654 aattacgaatgatcttctacttgcatcggaccaaggactcatctcttttc 29994605
00000376 ttgctttgttagacctaagcgcagcatttgacacaattgatcacagtatt 00000425
<<<<<<<< ||| ||| | ||||| || || |||||||| || || || || |||| <<<<<<<<
29994604 ttgtcttgctggacctcagtgccgcatttgataccatagaccattgtatc 29994555
00000426 ttgttagaaagattg 00000440
<<<<<<<< |||| | ||| | <<<<<<<<
29994554 ctgttgcagagacta 29994540
00000558 ggagttccccaaggatctgtattaggacct 00000587
<<<<<<<< ||||| || ||||| |||||| | ||||| <<<<<<<<
29994422 ggagtcccacaaggttctgtacttggaccg 29994393
*Aligned Blocks with gaps <= 8 bases are merged for this display