Control track and group visibility more selectively below.
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CESAR Gene Annotations |
| Human exons mapped by CESAR |
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Base Position |
| Chromosome position in bases. (Clicks here zoom in 3x) |
Assembly |
| Assembly from Fragments |
Chicken QTL |
| Chicken Quantitative Trait Loci from animalQTLdb |
Gap |
| Gap Locations |
GC Percent |
| GC Percent in 5-Base Windows |
INSDC |
| Accession at INSDC - International Nucleotide Sequence Database Collaboration |
RefSeq Acc |
| RefSeq Accession |
Restr Enzymes |
| Restriction Enzymes from REBASE |
Short Match |
| Perfect Matches to Short Sequence () |
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RefSeq Genes |
| RefSeq Genes |
AUGUSTUS |
| AUGUSTUS ab initio gene predictions v3.1 |
Ensembl Genes |
| Ensembl Genes |
Genscan Genes |
| Genscan Gene Predictions |
Other RefSeq |
| Non-Chicken RefSeq Genes |
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Web Sequences |
| DNA Sequences in Web Pages Indexed by Bing.com / Microsoft Research |
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Chicken ESTs |
| Chicken ESTs Including Unspliced |
Chicken mRNAs |
| Chicken mRNAs from GenBank |
Other mRNAs |
| Non-Chicken mRNAs from GenBank |
Spliced ESTs |
| Chicken ESTs That Have Been Spliced |
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CpG Islands |
| CpG Islands (Islands < 300 Bases are Light Green) |
CpG Islands |
| CpG Islands (Islands < 300 Bases are Light Green) |
Unmasked CpG |
| CpG Islands on All Sequence (Islands < 300 Bases are Light Green) |
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Zebra finch Chain/Net |
| Zebra finch (Feb. 2013 (WashU taeGut324/taeGut2)), Chain and Net Alignments |
Medium ground finch Chain/Net |
| Medium ground finch (Apr. 2012 (GeoFor_1.0/geoFor1)), Chain and Net Alignments |
Mouse Chain/Net |
| Mouse (Dec. 2011 (GRCm38/mm10)), Chain and Net Alignments |
Lamprey Chain/Net |
| Lamprey (Sep. 2010 (WUGSC 7.0/petMar2)), Chain and Net Alignments |
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RepeatMasker |
| Repeating Elements by RepeatMasker |
All SNPs(138) |
| Simple Nucleotide Polymorphisms (dbSNP 138) |
Common SNPs(138) |
| Simple Nucleotide Polymorphisms (dbSNP 138) Found in >= 1% of Samples |
updated
EVA SNP |
| Short Genetic Variants from European Variant Archive |
Interrupted Rpts |
| Fragments of Interrupted Repeats Joined by RepeatMasker ID |
Microsatellite |
| Microsatellites - Di-nucleotide and Tri-nucleotide Repeats |
Mult. SNPs(138) |
| Simple Nucleotide Polymorphisms (dbSNP 138) That Map to Multiple Genomic Loci |
Simple Repeats |
| Simple Tandem Repeats by TRF |
WM + SDust |
| Genomic Intervals Masked by WindowMasker + SDust |
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