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Configure Tracks on UCSC Genome Browser: Orangutan July 2007 (WUGSC 2.0.2/ponAbe2)
  Tracks:    Groups:
Control track and group visibility more selectively below.
-   Mapping and Sequencing    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
Gap Gap Locations
Assembly Assembly from Contigs
GC Percent GC Percent in 5-Base Windows
Quality Scores Orangutan Sequencing Quality Scores
Restr Enzymes Restriction Enzymes from REBASE
Short Match Perfect Matches to Short Sequence ()
-   Genes and Gene Predictions    
Other RefSeq Non-Orangutan RefSeq Genes
RefSeq Genes RefSeq Genes
AUGUSTUS AUGUSTUS ab initio gene predictions v3.1
Ensembl Genes Ensembl Genes
Geneid Genes Geneid Gene Predictions
Genscan Genes Genscan Gene Predictions
N-SCAN N-SCAN Gene Predictions
TransMap V5 TransMap Alignments Version 5
     TransMap Ensembl     TransMap Ensembl and GENCODE Mappings Version 5
     TransMap RefGene     TransMap RefSeq Gene Mappings Version 5
     TransMap RNA     TransMap GenBank RNA Mappings Version 5
     TransMap ESTs     TransMap EST Mappings Version 5
tRNA Genes Transfer RNA Genes Identified with tRNAscan-SE
-   mRNA and EST    
Orangutan mRNAs Orangutan mRNAs from GenBank
Spliced ESTs Orangutan ESTs That Have Been Spliced
Orangutan ESTs Orangutan ESTs Including Unspliced
Other mRNAs Non-Orangutan mRNAs from GenBank
-   Comparative Genomics    
Conservation 8 Species Multiz Alignment & Conservation
Gorilla Chain/Net Gorilla (May 2011 (gorGor3.1/gorGor3)), Chain and Net Alignments
Chimp Chain/Net Chimp (Oct. 2010 (CGSC 2.1.3/panTro3)), Chain and Net Alignments
Human Chain/Net Human (Dec. 2013 (GRCh38/hg38)), Chain and Net Alignments
Human Chain/Net Human (Feb. 2009 (GRCh37/hg19)), Chain and Net Alignments
Rhesus Chain/Net Rhesus (Oct. 2010 (BGI CR_1.0/rheMac3)), Chain and Net Alignments
Marmoset Chain/Net Marmoset (March 2009 (WUGSC 3.2/calJac3)), Chain and Net Alignments
Tarsier Chain/Net Tarsier (Sep. 2013 (Tarsius_syrichta-2.0.1/tarSyr2)), Chain and Net Alignments
Mouse Chain/Net Mouse (July 2007 (NCBI37/mm9)), Chain and Net Alignments
Mouse Chain/Net Mouse (Dec. 2011 (GRCm38/mm10)), Chain and Net Alignments
Opossum Chain/Net Opossum (Oct. 2006 (Broad/monDom5)), Chain and Net Alignments
Platypus Chain/Net Platypus (Mar. 2007 (WUGSC 5.0.1/ornAna1)), Chain and Net Alignments
-   Variation and Repeats    
RepeatMasker Repeating Elements by RepeatMasker
Interrupted Rpts Fragments of Interrupted Repeats Joined by RepeatMasker ID
Microsatellite Microsatellites - Di-nucleotide and Tri-nucleotide Repeats
Simple Repeats Simple Tandem Repeats by TRF