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Configure Tracks on UCSC Genome Browser: Zebrafish Mar. 2006 (Zv6/danRer4)
  Tracks:    Groups:
Control track and group visibility more selectively below.
-   Mapping and Sequencing    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
Scaffolds Assembly Scaffolds (Supercontigs)
Contigs Assembly Contigs
Radiation Hybrid Alignments of Sequences for Radiation Hybrid Map (RH map)
BAC End Pairs BAC End Pairs
BAC End Singles BAC End Singles
Gap Gap Locations
GC Percent GC Percent in 5-Base Windows
Restr Enzymes Restriction Enzymes from REBASE
Short Match Perfect Matches to Short Sequence ()
-   Genes and Gene Predictions    
RefSeq Genes RefSeq Genes
Ensembl Genes Ensembl Genes
Vega Genes Vega Annotations
AUGUSTUS AUGUSTUS ab initio gene predictions v3.1
CONTRAST CONTRAST Gene Predictions
Genscan Genes Genscan Gene Predictions
Human Proteins Human Proteins Mapped by Chained tBLASTn
N-SCAN N-SCAN Gene Predictions
Other RefSeq Non-Zebrafish RefSeq Genes
ZGC Genes Zebrafish Gene Collection Full ORF mRNAs
-   mRNA and EST    
Spliced ESTs Zebrafish ESTs That Have Been Spliced
Zebrafish ESTs Zebrafish ESTs Including Unspliced
Zebrafish mRNAs Zebrafish mRNAs from GenBank
-   Expression and Regulation    
Wild Type Array Zon Lab Expression data for Wild Type Zebrafish
Affy Zebrafish Alignments of Affymetrix Consensus Sequences from Zebrafish Chip
-   Comparative Genomics    
Conservation 7-Way Multiz Alignment & Conservation
Stickleback Chain/Net Stickleback (Feb. 2006 (Broad/gasAcu1)), Chain and Net Alignments
Fugu Chain/Net Fugu (Oct. 2004 (JGI 4.0/fr2)), Chain and Net Alignments
Tetraodon Chain/Net Tetraodon (Feb. 2004 (Genoscope 7/tetNig1)), Chain and Net Alignments
X. tropicalis Chain/Net X. tropicalis (Aug. 2005 (JGI 4.1/xenTro2)), Chain and Net Alignments
Chicken Chain/Net Chicken (May 2006 (WUGSC 2.1/galGal3)), Chain and Net Alignments
Opossum Chain/Net Opossum (Jan. 2006 (Broad/monDom4)), Chain and Net Alignments
Rat Chain/Net Rat (Nov. 2004 (Baylor 3.4/rn4)), Chain and Net Alignments
Mouse Chain/Net Mouse (Feb. 2006 (NCBI36/mm8)), Chain and Net Alignments
Chimp Chain/Net Chimp (Mar. 2006 (CGSC 2.1/panTro2)), Chain and Net Alignments
Human Chain/Net Human (Mar. 2006 (NCBI36/hg18)), Chain and Net Alignments
-   Variation and Repeats    
RepeatMasker Repeating Elements by RepeatMasker
Microsatellite Microsatellites - Di-nucleotide and Tri-nucleotide Repeats
Simple Repeats Simple Tandem Repeats by TRF