Control track and group visibility more selectively below.
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Base Position |
| Chromosome position in bases. (Clicks here zoom in 3x) |
Scaffolds |
| Assembly Scaffolds (Supercontigs) |
Contigs |
| Assembly Contigs |
Radiation Hybrid |
| Alignments of Sequences for Radiation Hybrid Map (RH map) |
BAC End Pairs |
| BAC End Pairs |
BAC End Singles |
| BAC End Singles |
Gap |
| Gap Locations |
GC Percent |
| GC Percent in 5-Base Windows |
Restr Enzymes |
| Restriction Enzymes from REBASE |
Short Match |
| Perfect Matches to Short Sequence () |
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RefSeq Genes |
| RefSeq Genes |
Ensembl Genes |
| Ensembl Genes |
Vega Genes |
| Vega Annotations |
AUGUSTUS |
| AUGUSTUS ab initio gene predictions v3.1 |
CONTRAST |
| CONTRAST Gene Predictions |
Genscan Genes |
| Genscan Gene Predictions |
Human Proteins |
| Human Proteins Mapped by Chained tBLASTn |
N-SCAN |
| N-SCAN Gene Predictions |
Other RefSeq |
| Non-Zebrafish RefSeq Genes |
ZGC Genes |
| Zebrafish Gene Collection Full ORF mRNAs |
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Spliced ESTs |
| Zebrafish ESTs That Have Been Spliced |
Zebrafish ESTs |
| Zebrafish ESTs Including Unspliced |
Zebrafish mRNAs |
| Zebrafish mRNAs from GenBank |
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Wild Type Array |
| Zon Lab Expression data for Wild Type Zebrafish |
Affy Zebrafish |
| Alignments of Affymetrix Consensus Sequences from Zebrafish Chip |
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Conservation |
| 7-Way Multiz Alignment & Conservation |
Stickleback Chain/Net |
| Stickleback (Feb. 2006 (Broad/gasAcu1)), Chain and Net Alignments |
Fugu Chain/Net |
| Fugu (Oct. 2004 (JGI 4.0/fr2)), Chain and Net Alignments |
Tetraodon Chain/Net |
| Tetraodon (Feb. 2004 (Genoscope 7/tetNig1)), Chain and Net Alignments |
X. tropicalis Chain/Net |
| X. tropicalis (Aug. 2005 (JGI 4.1/xenTro2)), Chain and Net Alignments |
Chicken Chain/Net |
| Chicken (May 2006 (WUGSC 2.1/galGal3)), Chain and Net Alignments |
Opossum Chain/Net |
| Opossum (Jan. 2006 (Broad/monDom4)), Chain and Net Alignments |
Rat Chain/Net |
| Rat (Nov. 2004 (Baylor 3.4/rn4)), Chain and Net Alignments |
Mouse Chain/Net |
| Mouse (Feb. 2006 (NCBI36/mm8)), Chain and Net Alignments |
Chimp Chain/Net |
| Chimp (Mar. 2006 (CGSC 2.1/panTro2)), Chain and Net Alignments |
Human Chain/Net |
| Human (Mar. 2006 (NCBI36/hg18)), Chain and Net Alignments |
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RepeatMasker |
| Repeating Elements by RepeatMasker |
Microsatellite |
| Microsatellites - Di-nucleotide and Tri-nucleotide Repeats |
Simple Repeats |
| Simple Tandem Repeats by TRF |
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