Control track and group visibility more selectively below.
|
|
|---|
| FACEBASE:23RT |
| Interpremaxillary suture, WT and Fgfr2+/S252W (Apert syndrome mouse model), E16.5 and E18.5 |
| FACEBASE:3G0P |
| A6IPM4PM_genome.UniqueMultiple.all.bw |
| FACEBASE:3G0J |
| W8IPM4SM_genome.UniqueMultiple.all.bw |
| FACEBASE:3G0E |
| W8IPM2PM_genome.UniqueMultiple.all.bw |
| FACEBASE:3G0A |
| A6IPM2SM_genome.UniqueMultiple.all.bw |
| FACEBASE:3FZT |
| W6IPM2PM_genome.UniqueMultiple.all.bw |
| FACEBASE:3FZP |
| W6IPM5SM_genome.UniqueMultiple.all.bw |
| FACEBASE:3FWT |
| A6IPM1SM_genome.UniqueMultiple.all.bw |
| FACEBASE:3FZJ |
| A8IPM5PM_genome.UniqueMultiple.all.bw |
| FACEBASE:3FYA |
| A6IPM3SM_genome.UniqueMultiple.all.bw |
| FACEBASE:3FY6 |
| W6IPM5PM_genome.UniqueMultiple.all.bw |
| FACEBASE:3G06 |
| W6IPM4SM_genome.UniqueMultiple.all.bw |
| FACEBASE:3G02 |
| A8IPM4PM_genome.UniqueMultiple.all.bw |
| FACEBASE:3FZY |
| A8IPM2SM_genome.UniqueMultiple.all.bw |
| FACEBASE:3FZE |
| A8IPM1PM_genome.UniqueMultiple.all.bw |
| FACEBASE:3FZA |
| W6IPM1SM_genome.UniqueMultiple.all.bw |
| FACEBASE:3FZ6 |
| A8IPM3SM_genome.UniqueMultiple.all.bw |
| FACEBASE:3FZ2 |
| W6IPM3PM_genome.UniqueMultiple.all.bw |
| FACEBASE:3FYY |
| A6IPM5PM_genome.UniqueMultiple.all.bw |
| FACEBASE:3FYT |
| W8IPM5SM_genome.UniqueMultiple.all.bw |
| FACEBASE:3FYP |
| W8IPM1SM_genome.UniqueMultiple.all.bw |
| FACEBASE:3FYJ |
| A6IPM1PM_genome.UniqueMultiple.all.bw |
| FACEBASE:3FYE |
| W8IPM3PM_genome.UniqueMultiple.all.bw |
| FACEBASE:3FXJ |
| W6IPM1PM_genome.UniqueMultiple.all.bw |
| FACEBASE:3FY2 |
| A8IPM5SM_genome.UniqueMultiple.all.bw |
| FACEBASE:3FXY |
| A8IPM3PM_genome.UniqueMultiple.all.bw |
| FACEBASE:3FXT |
| W6IPM3SM_genome.UniqueMultiple.all.bw |
| FACEBASE:3FXP |
| A8IPM1SM_genome.UniqueMultiple.all.bw |
| FACEBASE:3FXE |
| A6IPM5SM_genome.UniqueMultiple.all.bw |
| FACEBASE:3FXA |
| W8IPM5PM_genome.UniqueMultiple.all.bw |
| FACEBASE:3FX6 |
| W8IPM3SM_genome.UniqueMultiple.all.bw |
| FACEBASE:3FWP |
| A6IPM4SM_genome.UniqueMultiple.all.bw |
| FACEBASE:3FW6 |
| W6IPM4PM_genome.UniqueMultiple.all.bw |
| FACEBASE:3FVY |
| A8IPM4SM_genome.UniqueMultiple.all.bw |
| FACEBASE:3FVT |
| A8IPM2PM_genome.UniqueMultiple.all.bw |
| FACEBASE:3FX2 |
| A6IPM3PM_genome.UniqueMultiple.all.bw |
| FACEBASE:3FVP |
| W6IPM2SM_genome.UniqueMultiple.all.bw |
| FACEBASE:3FWY |
| W8IPM1PM_genome.UniqueMultiple.all.bw |
| FACEBASE:3FWJ |
| W8IPM4PM_genome.UniqueMultiple.all.bw |
| FACEBASE:3FWE |
| W8IPM2SM_genome.UniqueMultiple.all.bw |
| FACEBASE:3FWA |
| A6IPM2PM_genome.UniqueMultiple.all.bw |
| FACEBASE:25RG |
| ChIP-seq and RNA-seq of mouse e13.5 maxillary process |
| FACEBASE:3G1A |
| e13.5_mx_rna.rpm.minus.bw |
| FACEBASE:3G16 |
| e13.5_mx_input.mm9.uu.sort.ext.rpm.bw |
| FACEBASE:3G12 |
| e13.5_mx_h3k4me1.mm9.uu.sort.ext.rpm.bw |
| FACEBASE:3G0Y |
| e13.5_mx_h3k27me3.mm9.uu.sort.ext.rpm.bw |
| FACEBASE:3G0T |
| e13.5_mx_h3k27ac_redo.mm9.uu.sort.ext.rpm.bw |
| FACEBASE:3G1J |
| e13.5_mx_rna.rpm.plus.bw |
| FACEBASE:2618 |
| ChIP-seq and RNA-seq of mouse e13.5 mandibular process |
| FACEBASE:3G2E |
| e13.5_md_rna.rpm.plus.bw |
| FACEBASE:3G2A |
| e13.5_md_rna.rpm.minus.bw |
| FACEBASE:3G26 |
| e13.5_md_input.mm9.uu.sort.ext.rpm.bw |
| FACEBASE:3G22 |
| e13.5_md_h3k4me3.mm9.uu.sort.ext.rpm.bw |
| FACEBASE:3G1Y |
| e13.5_md_h3k4me1.mm9.uu.sort.ext.rpm.bw |
| FACEBASE:3G1T |
| e13.5_md_h3k27me3.mm9.uu.sort.ext.rpm.bw |
| FACEBASE:3G1P |
| e13.5_md_h3k27ac.mm9.uu.sort.ext.rpm.bw |
| FACEBASE:2660 |
| ChIP-seq and RNA-seq of mouse e13.5 nose |
| FACEBASE:3G2P |
| e13.5_nose_h3k27me3.mm9.uu.sort.ext.rpm.bw |
| FACEBASE:3G2J |
| e13.5_nose_h3k27ac.mm9.uu.sort.ext.rpm.bw |
| FACEBASE:3G3A |
| e13.5_nose_rna.rpm.plus.bw |
| FACEBASE:3G32 |
| e13.5_nose_input.mm9.uu.sort.ext.rpm.bw |
| FACEBASE:3G2Y |
| e13.5_nose_h3k4me3.mm9.uu.sort.ext.rpm.bw |
| FACEBASE:3G2T |
| e13.5_nose_h3k4me1.mm9.uu.sort.ext.rpm.bw |
| FACEBASE:3G36 |
| e13.5_nose_rna.rpm.minus.bw |
| FACEBASE:26HG |
| ChIP-seq of multiple histone marks and RNA-seq from CS18 human embryonic face tissue |
| FACEBASE:3G46 |
| cs18_12612_rna.rpm.plus.bw |
| FACEBASE:3G42 |
| cs18_12612_rna.rpm.minus.bw |
| FACEBASE:3G3Y |
| cs18_12612_input.hg19.uu.sort.ext.rpm.bw |
| FACEBASE:3G3T |
| cs18_12612_h3k4me1.hg19.uu.sort.ext.rpm.bw |
| FACEBASE:3G3P |
| cs18_12612_h3k27me3.hg19.uu.sort.ext.rpm.bw |
| FACEBASE:3G3J |
| cs18_12612_h3k27ac.hg19.uu.sort.ext.rpm.bw |
| FACEBASE:3G3E |
| cs18_12612_atac.hg19.uu.sort.ext.rpm.bw |
| FACEBASE:44-HVCJ |
| BRD4 binds to active cranial neural crest enhancers to regulate RUNX2 activity during osteoblast differentiation |
| FACEBASE:4M-JASR |
| H3K27ac_cutntag_NCC_D0_WT_merge.bw |
| FACEBASE:4M-JASP |
| BRD4_cutntag_NCC_D6_OST_KO2_merge.bw |
| FACEBASE:4M-JASM |
| BRD4_cutntag_NCC_D3_OST_WT_merge.bw |
| FACEBASE:4M-JASJ |
| RUNX2_cutnrun_NCC_D0_WT_merge.bw |
| FACEBASE:4M-JASG |
| BRD4_cutntag_NCC_D0_WT_merge.bw |
| FACEBASE:4M-JASE |
| RUNX2_cutnrun_NCC_D0_KO2_merge.bw |
| FACEBASE:4M-JASC |
| RUNX2_cutnrun_ES_WT_merge.bw |
| FACEBASE:4M-JASA |
| BRD4_cutntag_NCC_D6_OST_WT_merge.bw |
| FACEBASE:4M-JAS8 |
| H3K27ac_cutntag_NCC_D0_KO2_merge.bw |
| FACEBASE:4M-JAS6 |
| H3K27ac_cutntag_NCC_D3_OST_WT_merge.bw |
| FACEBASE:4M-JAS4 |
| BRD4_cutntag_NCC_D3_OST_KO2_merge.bw |
| FACEBASE:4M-JAS2 |
| H3K4me2_cutntag_NCC_D0_WT.bw |
| FACEBASE:4M-JAS0 |
| RUNX2_cutnrun_NCC_D3_OST_WT_merge.bw |
| FACEBASE:4M-JARY |
| H3K27ac_cutntag_NCC_D6_OST_WT_merge.bw |
| FACEBASE:4J-T8Q0 |
| H3K27ac_cutntag_NCC_D0_WT_merge_enhancer_peaks.bb |
| FACEBASE:4J-T8PY |
| BRD4_cutntag_NCC_D0_KO2_merge.bw |
| FACEBASE:4J-T8PW |
| BRD4_cutntag_NCC_D3_OST_WT_merge_peaks.bb |
| FACEBASE:4J-T8PT |
| RUNX2_cutnrun_NCC_D0_WT_merge_peaks.bb |
| FACEBASE:4J-T8PR |
| BRD4_cutntag_NCC_D0_WT_merge_peaks.bb |
| FACEBASE:4J-T8PP |
| BRD4_cutntag_NCC_D6_OST_WT_merge_peaks.bb |
| FACEBASE:4J-T0HC |
| H3K27ac_cutntag_NCC_D3_OST_WT_merge_enhancer_peaks.bb |
| FACEBASE:4J-T0HA |
| H3K27me3_cutntag_NCC_D0_WT_merge_peaks.bb |
| FACEBASE:4J-T0H8 |
| H3K27me3_cutntag_NCC_D0_WT.bw |
| FACEBASE:4J-T0H6 |
| H3K4me2_cutntag_NCC_D0_WT_merge_peaks.bb |
| FACEBASE:4J-T0H4 |
| RUNX2_cutnrun_NCC_D3_OST_WT_merge_peaks.bb |
| FACEBASE:4J-T0H2 |
| H3K27ac_cutntag_NCC_D6_OST_WT_merge_enhancer_peaks.bb |
| FACEBASE:TJC |
| Coronal suture, WT and Twist1+/- (Saethre-Chotzen syndrome mouse model), E16.5 |
| FACEBASE:3FVJ |
| W6C4BFR_genome.all.bw |
| FACEBASE:3FVE |
| W6C4BSM_genome.all.bw |
| FACEBASE:3FVA |
| W6C4BPA_genome.all.bw |
| FACEBASE:TJT |
| Human and Chimpanzee ChIP-seq assays |
| FACEBASE:3F96 |
| SRR2096445.bw |
| FACEBASE:3F92 |
| SRR2096444.bw |
| FACEBASE:3F8Y |
| SRR2096443.bw |
| FACEBASE:3F8T |
| SRR2096442.bw |
| FACEBASE:3F86 |
| SRR2096437.bw |
| FACEBASE:3FD2 |
| SRR2096416.bw |
| FACEBASE:3FCY |
| SRR2096415.bw |
| FACEBASE:3FDT |
| SRR2096422.bw |
| FACEBASE:3FAJ |
| SRR2096402.bw |
| FACEBASE:3FAE |
| SRR2096401.bw |
| FACEBASE:3FAA |
| SRR2096400.bw |
| FACEBASE:3FA6 |
| SRR2096399.bw |
| FACEBASE:3FA2 |
| SRR2096398.bw |
| FACEBASE:3F9Y |
| SRR2096397.bw |
| FACEBASE:3F8A |
| SRR2096438.bw |
| FACEBASE:3F9A |
| SRR2096456.bw |
| FACEBASE:3FDE |
| SRR2096419.bw |
| FACEBASE:3FDA |
| SRR2096418.bw |
| FACEBASE:3FD6 |
| SRR2096417.bw |
| FACEBASE:3FDP |
| SRR2096421.bw |
| FACEBASE:3FDJ |
| SRR2096420.bw |
| FACEBASE:3F9E |
| SRR2096457.bw |
| FACEBASE:3FV6 |
| SRR2096434.bw |
| FACEBASE:3F8E |
| SRR2096439.bw |
| FACEBASE:3FTT |
| SRR2096431.bw |
| FACEBASE:3F7Y |
| SRR2096435.bw |
| FACEBASE:3FAP |
| SRR2096403.bw |
| FACEBASE:3FCT |
| SRR2096414.bw |
| FACEBASE:3FCP |
| SRR2096413.bw |
| FACEBASE:3F9T |
| SRR2096396.bw |
| FACEBASE:3FCA |
| SRR2096411.bw |
| FACEBASE:3FC6 |
| SRR2096410.bw |
| FACEBASE:3FV2 |
| SRR2096433.bw |
| FACEBASE:3F9P |
| SRR2096395.bw |
| FACEBASE:3FC2 |
| SRR2096409.bw |
| FACEBASE:3FDY |
| SRR2096423.bw |
| FACEBASE:3FBA |
| SRR2096408.bw |
| FACEBASE:3FB6 |
| SRR2096407.bw |
| FACEBASE:3F9J |
| SRR2096394.bw |
| FACEBASE:3FTA |
| SRR2096427.bw |
| FACEBASE:3FB2 |
| SRR2096406.bw |
| FACEBASE:3FE2 |
| SRR2096424.bw |
| FACEBASE:3FCE |
| SRR2096412.bw |
| FACEBASE:3FTP |
| SRR2096430.bw |
| FACEBASE:3FAY |
| SRR2096405.bw |
| FACEBASE:3FTE |
| SRR2096428.bw |
| FACEBASE:3F8P |
| SRR2096441.bw |
| FACEBASE:3FTJ |
| SRR2096429.bw |
| FACEBASE:3F8J |
| SRR2096440.bw |
| FACEBASE:3FAT |
| SRR2096404.bw |
| FACEBASE:3FT6 |
| SRR2096426.bw |
| FACEBASE:3FE6 |
| SRR2096425.bw |
| FACEBASE:3FTY |
| SRR2096432.bw |
| FACEBASE:3F82 |
| SRR2096436.bw |
| FACEBASE:TMJ |
| ChIP-seq of multiple histone marks and RNA-seq from e11.5 mouse face subregions |
| FACEBASE:3F7E |
| e11.5_mnp_H3K4me1.mm9.uu.sort.ext.rpm.bw |
| FACEBASE:3F7A |
| e11.5_mnp_H3K27me3.mm9.uu.sort.ext.rpm.bw |
| FACEBASE:3F76 |
| e11.5_mnp_H3K27ac.mm9.uu.sort.ext.rpm.bw |
| FACEBASE:3F72 |
| e11.5_mx_H3K4me1.mm9.uu.sort.ext.rpm.bw |
| FACEBASE:3F6Y |
| e11.5_mx_H3K27me3.mm9.uu.sort.ext.rpm.bw |
| FACEBASE:3F6T |
| e11.5_mx_H3K27ac.mm9.uu.sort.ext.rpm.bw |
| FACEBASE:3F6P |
| e11.5_lnp_H3K4me1.mm9.uu.sort.ext.rpm.bw |
| FACEBASE:3F6J |
| e11.5_lnp_H3K27me3.mm9.uu.sort.ext.rpm.bw |
| FACEBASE:3F6A |
| e11.5_md_H3K4me1.mm9.uu.sort.ext.rpm.bw |
| FACEBASE:3F66 |
| e11.5_md_H3K27me3.mm9.uu.sort.ext.rpm.bw |
| FACEBASE:3F62 |
| e11.5_md_H3K27ac.mm9.uu.sort.ext.rpm.bw |
| FACEBASE:3F5J |
| e11.5_mx_rna.rpm.plus.bw |
| FACEBASE:3F5E |
| e11.5_lnp_rna.rpm.minus.bw |
| FACEBASE:3F5A |
| e11.5_lnp_rna.rpm.plus.bw |
| FACEBASE:3F56 |
| e11.5_md_rna.rpm.minus.bw |
| FACEBASE:3F52 |
| e11.5_md_rna.rpm.plus.bw |
| FACEBASE:3F6E |
| e11.5_lnp_H3K27ac.mm9.uu.sort.ext.rpm.bw |
| FACEBASE:3F5Y |
| e11.5_mnp_rna.rpm.minus.bw |
| FACEBASE:3F5P |
| e11.5_mx_rna.rpm.minus.bw |
| FACEBASE:3F5T |
| e11.5_mnp_rna.rpm.plus.bw |
| Potter Lab Track |
| Potter Lab Track |
| e10_5_OlfacPlacod |
| e10_5_OlfacPlacod |
| e10_5_MaxilArch |
| e10_5_MaxilArch |
| e10_5_MandibArch |
| e10_5_MandibArch |
| e8_5_ParaxMesoder |
| e8_5_ParaxMesoderm |
| e10_5_Emin_Medial |
| e10_5_Emin_MedialNasal |
| e10_5_Emin_Latera |
| e10_5_Emin_LateralNasal |
| e8_5_NeuroEpith_n |
| e8_5_NeuroEpith_nonFloorPlate |
| e8_5_NeuroEpith_H |
| e8_5_NeuroEpith_HindBrain |
| e8_5_FloorPlate |
| e8_5_FloorPlate |
| Visel Lab Track |
| Visel Lab Track |
| mm_CD1_palate_e14 |
| mm_CD1_palate_e14_5_p300_normalized_bw |
| mm_CD1_palate_e14 |
| mm_CD1_palate_e14_5_p300_bw |
| Palate_E15_5_bw |
| Palate_E15_5_bw |
| Palate_E14_5_bw |
| Palate_E14_5_bw |
| Palate_E13_5_bw |
| Palate_E13_5_bw |
| Palate_E12_5_rpm |
| Palate_E12_5_rpm_bw |
| mm_CD1_palate_e13 |
| mm_CD1_palate_e13_5_p300_normalized_bw |
| mm_CD1_palate_e13 |
| mm_CD1_palate_e13_5_p300_bw |
| mm_CD1_face_e11_5 |
| mm_CD1_face_e11_5_p300_normalized_bw |
| mm_CD1_face_e11_5 |
| mm_CD1_face_e11_5_p300_bw |
| Face_E11_5_rpm_b |
| Face_E11_5_rpm_bw |
| mm_CD1_palate_e14 |
| CALP006B_mm_CD1_palate_e14.5_p300_withInput_peaks |
| mm_CD1_palate_e13 |
| HTCX_mm_CD1_palate_e13.5_p300_withInput_peaks |
| mm_CD1_face_e11_5 |
| GBBT_mm_CD1_face_e11.5_p300_score1_p04_bwa_peaks |
| Face_E11_5_bw |
| Face_E11_5_bw |
| Palate_E12_5_bw |
| Palate_E12_5_bw |
| CALP006B_e14_5_p3 |
| CALP006B_mm_CD1_palate_e14_5_p300_withInput.bw |
| CALP006B_e14_5_p3 |
| CALP006B_mm_CD1_palate_e14_5_p300_withInput_normalized.bw |
| CALP006B_e14_5_p3 |
| CALP006B_mm_CD1_palate_e14_5_p300_withInput_peaks.bed |
| e11.5_P300_peaks |
| mm-CD1-e11.5-face_P300_peaks.bed |
| GBBT_e11.5_p300 |
| GBBT_mm_CD1_e11.5_face_p300.bw |
| GBBT_e11.5_p300_n |
| GBBT_mm_CD1_e11.5_face_p300.normalized.bw |
| RNAseq_e15.5_pal |
| RNAseq_E15.5_palate_normalised |
| RNAseq_e15.5_pal |
| RNAseq_E15.5_palate_raw |
| RNAseq_e14.5_pal |
| RNAseq_E14.5_palate_normalised |
| RNAseq_e14.5_pala |
| RNAseq_E14.5_palate_raw |
| RNAseq_e13.5_pal |
| RNAseq_E13.5_palate_normalised |
| RNAseq_e13.5_pal_ |
| RNAseq_E13.5_palate_raw |
| GBBT_e11_5_p300_n |
| GBBT_mm_CD1_e11_5_face_p300_normalized |
| GBBT_mm_CD1_e11_5 |
| GBBT_mm_CD1_e11_5_face_p300 |
| G2e115cfp300_rejp |
| GBBT_2_mm_CD1_e11_5_craniofacial_p300_rejected_peaks_filtered_merged |
| G2_e11_5_cf_p300 |
| GBBT_2_mm_CD1_e11_5_craniofacial_p300_normalized |
| G2_e11_5_cf_p300_ |
| GBBT_2_mm_CD1_e11_5_craniofacial_p300_bam |
| G2_e11_5_cf_p300 |
| GBBT_2_mm_CD1_e11_5_craniofacial_p300_bw |
| G2_e11_5_cf_p300 |
| GBBT_2_mm_CD1_e11_5_cf_p300_pks_fm |
| RNAseq_e13_5_pal |
| RNAseq_E13_5_palate_b |
| RNAseq_e13_5_pal |
| RNAseq_E13_5_palate_a |
| P300_e13.5_palrej |
| P300ChIP_E13.5_palate_rejected_peaks.bed |
| P300_e13.5_palpks |
| P300ChIP_E13.5_palate_peaks.bed |
| P300_E13.5_pal |
| P300ChIP_E13.5_palate.bam |
| P300_E13.5_pal_no |
| P300ChIP_E13.5_palate_normalised.bw |
| enhncr_pos_e11.5 |
| enhancer_positive_at_e11.5 |
| enhncr_neg_e11.5 |
| enhancer_negative_at_e11.5 |
|
|
|
|
|---|
| Base Position |
| Chromosome position in bases. (Clicks here zoom in 3x) |
| STS Markers |
| STS Markers on Genetic and Radiation Hybrid Maps |
| Assembly |
| Assembly from Fragments |
| BAC End Pairs |
| BAC End Pairs |
| Chromosome Band |
| Chromosome Bands Based On Microscopy |
| Gap |
| Gap Locations |
| GC Percent |
| GC Percent in 5-Base Windows |
| GRC Incident |
| GRC Incident Database |
| Map Contigs |
| Physical Map Contigs |
| Mappability |
| Mappability or Uniqueness of Reference Genome from ENCODE |
| MGI QTL |
| Quantitative Trait Loci From Jackson Laboratory / Mouse Genome Informatics |
| Restr Enzymes |
| Restriction Enzymes from REBASE |
| Short Match |
| Perfect Matches to Short Sequence () |
|
|
|
|
|---|
| UCSC Genes |
| UCSC Genes (RefSeq, GenBank, tRNAs & Comparative Genomics) |
| Ensembl Genes |
| Ensembl Genes |
| Human Proteins |
| Human Proteins Mapped by Chained tBLASTn |
| RefSeq Genes |
| RefSeq Genes |
| Other RefSeq |
| Non-Mouse RefSeq Genes |
| AceView Genes |
| AceView Gene Models With Alt-Splicing |
| AUGUSTUS |
| AUGUSTUS ab initio gene predictions v3.1 |
| CCDS |
| Consensus CDS |
| CRISPR |
| CRISPR/Cas9 Sp. Pyog. target sites |
| CRISPR Regions |
| Genome regions processed to find CRISPR/Cas9 target sites (exons +/- 200 bp) |
| CRISPR Targets |
| CRISPR/Cas9 -NGG Targets |
| Exoniphy |
| Exoniphy Mouse/Rat/Human/Dog |
| Gene Trap |
| International Gene Trap Consortium Sequence Tag Alignments |
| Geneid Genes |
| Geneid Gene Predictions |
| Genscan Genes |
| Genscan Gene Predictions |
| IKMC Genes |
| International Knockout Mouse Consortium Genes |
| MGC Genes |
| Mammalian Gene Collection Full ORF mRNAs |
| miRNA |
| MicroRNAs from miRBase |
| N-SCAN |
| N-SCAN Gene Predictions |
| NIA Gene Index |
| NIA Mouse Gene Index |
| Old UCSC Genes |
| Previous Version of UCSC Genes |
| ORFeome Clones |
| ORFeome Collaboration Gene Clones |
| Pfam in UCSC Gene |
| Pfam Domains in UCSC Genes |
| SGP Genes |
| SGP Gene Predictions Using Mouse/Human Homology |
| Transcriptome |
| TROMER Transcriptome database |
| tRNA Genes |
| Transfer RNA Genes Identified with tRNAscan-SE |
| UCSC Alt Events |
| Alternative Splicing, Alternative Promoter and Similar Events in UCSC Genes |
| Vega Genes |
| Vega Annotations |
| Yale Pseudo60 |
| Yale Pseudogenes based on Ensembl Release 60 |
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| Publications |
| Publications: Sequences in Scientific Articles |
| Web Sequences |
| DNA Sequences in Web Pages Indexed by Bing.com / Microsoft Research |
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| Spliced ESTs |
| Mouse ESTs That Have Been Spliced |
| Mouse ESTs |
| Mouse ESTs Including Unspliced |
| Mouse mRNAs |
| Mouse mRNAs from GenBank |
| Other mRNAs |
| Non-Mouse mRNAs from GenBank |
| PolyA-Seq |
| Poly(A)-sequencing from Merck Research Laboratories |
| SIB Alt-Splicing |
| Alternative Splicing Graph from Swiss Institute of Bioinformatics |
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| MGI Allele |
| Jackson Laboratory / Mouse Genome Informatics Allele |
| MGI Gene Trap |
| Jackson Laboratory / Mouse Genome Informatics DNA and RNA Gene Traps |
| MGI Phenotype |
| Jackson Laboratory / Mouse Genome Informatics Phenotype |
| MGI RepTranscrpt |
| Jackson Laboratory / Mouse Genome Informatics Representative Transcript |
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| Affy Exon |
| Affymetrix All Exon Microarrays |
| Affy Exon Probes |
| Affymetrix Exon Array 1.0: Probesets |
| Affy Exon Tissues |
| Affymetrix Exon Array 1.0: Normal Tissues |
| Affy GNF1M |
| Alignments of Probes from Affymetrix GNF1M Chip |
| Affy MOE430 |
| Alignments of Affymetrix Consensus Sequences from Mouse MOE430 (A and B) |
| Affy U74 |
| Alignments of Affymetrix Consensus Sequences from MG-U74 v2 (A,B, and C) |
| Allen Brain |
| Allen Brain Atlas Probes |
| Caltech Histone |
| Histone Modifications by ChIP-seq from ENCODE/Caltech |
| Caltech RNA-seq |
| RNA-seq from ENCODE/Caltech |
| Caltech TFBS |
| Transcription Factor Binding Sites by ChIP-seq from ENCODE/Caltech |
| CpG Islands |
| CpG Islands (Islands < 300 Bases are Light Green) |
| CpG Islands |
| CpG Islands (Islands < 300 Bases are Light Green) |
| Unmasked CpG |
| CpG Islands on All Sequence (Islands < 300 Bases are Light Green) |
| CSHL Long RNA-seq |
| Long RNA-seq from ENCODE/Cold Spring Harbor Lab |
| FaceBase 24STypes |
| FaceBase 24 Sample Types Averaged |
| FSU Repli-chip |
| Replication Timing by Repli-chip from ENCODE/FSU |
| GNF Atlas 2 |
| GNF Expression Atlas 2 |
| GNF U74A |
| GNF Expression Atlas on Mouse Affymetrix U74A Chip |
| GNF U74B |
| GNF Expression Atlas on Mouse Affymetrix U74B Chip |
| GNF U74C |
| GNF Expression Atlas on Mouse Affymetrix U74C Chip |
| LICR Histone |
| Histone Mods by ChIP-seq from ENCODE/LICR |
| LICR RNA-seq |
| RNA-seq from ENCODE/LICR |
| LICR TFBS |
| Transcription Factor Binding Sites by ChIP-seq from ENCODE/LICR |
| NHGRI BiP |
| ENCODE NHGRI Elnitski Bidirectional Promoters |
| NKI Nuc Lamina |
| NKI Nuclear Lamina Associated Domains (LaminB1 DamID) |
| mouse LaminB1 ESC |
| NKI LaminB1 (DamID of LaminB1 in mouse Embryonic Stem cells, log2-ratio) |
| mouse LaminB1 NPC |
| NKI LaminB1 (DamID of LaminB1 in mouse Neural Progenitor cells, log2-ratio) |
| mouse LaminB1 AC |
| NKI LaminB1 (DamID of LaminB1 in mouse Astrocytes, log2-ratio) |
| mouse LaminB1 MEF |
| NKI LaminB1 (DamID of LaminB1 in mouse Embryonic Fibroblasts, log2-ratio) |
| ORegAnno |
| Regulatory elements from ORegAnno |
| PSU DNaseI HS |
| DNaseI Hypersensitivity by Digital DNaseI from ENCODE/PSU |
| PSU Histone |
| Histone Modifications by ChIP-seq from ENCODE/PSU |
| PSU RNA-seq |
| RNA-seq from ENCODE/PSU |
| PSU TFBS |
| Transcription Factor Binding Sites by ChIP-seq from ENCODE/PSU |
| REST |
| Repressor Element 1-Silencing Transcription Factor (REST) binding sites |
| Stan/Yale Histone |
| Histone Modifications by ChIP-seq from ENCODE/SYDH |
| Stan/Yale RNA-seq |
| RNA-seq from ENCODE/Stanford/Yale |
| Stan/Yale TFBS |
| Transcription Factor Binding Sites by ChIP-seq from ENCODE/Stanford/Yale |
| TS miRNA sites |
| TargetScan miRNA Regulatory Sites |
| UW DNaseI DGF |
| DNaseI Digital Genomic Footprinting from ENCODE/University of Washington |
| UW DNaseI HS |
| DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington |
| UW RNA-seq |
| RNA-seq from ENCODE/UW |
| VISTA Enhancers |
| VISTA Enhancers |
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| Conservation |
| 30-Way Multiz Alignment & Conservation |
| GERP |
| GERP scores for mammalian alignments |
| Rat Chain/Net |
| Rat (Nov. 2004 (Baylor 3.4/rn4)), Chain and Net Alignments |
| Guinea pig Chain/Net |
| Guinea pig (Feb. 2008 (Broad/cavPor3)), Chain and Net Alignments |
| Rabbit Chain/Net |
| Rabbit (Apr. 2009 (Broad/oryCun2)), Chain and Net Alignments |
| Marmoset Chain/Net |
| Marmoset (March 2009 (WUGSC 3.2/calJac3)), Chain and Net Alignments |
| Rhesus Chain/Net |
| Rhesus (Jan. 2006 (MGSC Merged 1.0/rheMac2)), Chain and Net Alignments |
| Orangutan Chain/Net |
| Orangutan (July 2007 (WUGSC 2.0.2/ponAbe2)), Chain and Net Alignments |
| Chimp Chain/Net |
| Chimp (Oct. 2010 (CGSC 2.1.3/panTro3)), Chain and Net Alignments |
| Human Chain/Net |
| Human (Feb. 2009 (GRCh37/hg19)), Chain and Net Alignments |
| Panda Chain/Net |
| Panda (Dec. 2009 (BGI-Shenzhen 1.0/ailMel1)), Chain and Net Alignments |
| Dog Chain/Net |
| Dog (May 2005 (Broad/canFam2)), Chain and Net Alignments |
| Cat Chain/Net |
| Cat (Dec. 2008 (NHGRI/GTB V17e/felCat4)), Chain and Net Alignments |
| Horse Chain/Net |
| Horse (Sep. 2007 (Broad/equCab2)), Chain and Net Alignments |
| Sheep Chain/Net |
| Sheep (Feb. 2010 (ISGC Ovis_aries_1.0/oviAri1)), Chain and Net Alignments |
| bosTau6 Chain/Net |
| Cow (Nov. 2009 (Bos_taurus_UMD_3.1/bosTau6)), Chain and Net Alignments |
| Pig Chain/Net |
| Pig (Nov. 2009 (SGSC Sscrofa9.2/susScr2)), Chain and Net Alignments |
| Elephant Chain/Net |
| Elephant (Jul. 2009 (Broad/loxAfr3)), Chain and Net Alignments |
| Opossum Chain/Net |
| Opossum (Oct. 2006 (Broad/monDom5)), Chain and Net Alignments |
| Platypus Chain/Net |
| Platypus (Mar. 2007 (WUGSC 5.0.1/ornAna1)), Chain and Net Alignments |
| Lizard Chain/Net |
| Lizard (May 2010 (Broad AnoCar2.0/anoCar2)), Chain and Net Alignments |
| Turkey Chain/Net |
| Turkey (Dec. 2009 (TGC Turkey_2.01/melGal1)), Chain and Net Alignments |
| Chicken Chain/Net |
| Chicken (May 2006 (WUGSC 2.1/galGal3)), Chain and Net Alignments |
| X. tropicalis Chain/Net |
| X. tropicalis (Nov. 2009 (JGI 4.2/xenTro3)), Chain and Net Alignments |
| Zebrafish Chain/Net |
| Zebrafish (Jul. 2010 (Zv9/danRer7)), Chain and Net Alignments |
| Stickleback Chain/Net |
| Stickleback (Feb. 2006 (Broad/gasAcu1)), Chain and Net Alignments |
| Medaka Chain/Net |
| Medaka (Oct. 2005 (NIG/UT MEDAKA1/oryLat2)), Chain and Net Alignments |
| Fugu Chain/Net |
| Fugu (Oct. 2004 (JGI 4.0/fr2)), Chain and Net Alignments |
| Tetraodon Chain/Net |
| Tetraodon (Mar. 2007 (Genoscope 8.0/tetNig2)), Chain and Net Alignments |
| Lamprey Chain/Net |
| Lamprey (Mar. 2007 (WUGSC 3.0/petMar1)), Chain and Net Alignments |
| Lancelet Chain/Net |
| Lancelet (Mar. 2006 (JGI 1.0/braFlo1)), Chain and Net Alignments |
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| SNPs (128) |
| Simple Nucleotide Polymorphisms (dbSNP build 128) |
| RepeatMasker |
| Repeating Elements by RepeatMasker |
| Agilent CGH |
| Agilent CGH Microarray probesets |
| Microsatellite |
| Microsatellites - Di-nucleotide and Tri-nucleotide Repeats |
| NumtS Sequence |
| Mouse NumtS mitochondrial sequence |
| Segmental Dups |
| Duplications of >1000 Bases of Non-RepeatMasked Sequence |
| Simple Repeats |
| Simple Tandem Repeats by TRF |
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