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Configure Tracks on UCSC Genome Browser: Zebrafish July 2007 (Zv7/danRer5)
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-   Mapping and Sequencing    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
Contigs Assembly Contigs
Assembly Assembly from Fragments
Gap Gap Locations
GC Percent GC Percent in 5-Base Windows
Restr Enzymes Restriction Enzymes from REBASE
Short Match Perfect Matches to Short Sequence ()
-   Genes and Gene Predictions    
RefSeq Genes RefSeq Genes
Ensembl Genes Ensembl Genes
Vega Genes Vega v28 Annotations
Vega Pseudogenes Vega v28 Annotated Pseudogenes
AUGUSTUS AUGUSTUS ab initio gene predictions v3.1
Human Proteins Human Proteins Mapped by Chained tBLASTn
Other RefSeq Non-Zebrafish RefSeq Genes
tRNA Genes Transfer RNA Genes Identified with tRNAscan-SE
ZGC Genes Zebrafish Gene Collection Full ORF mRNAs
-   mRNA and EST    
Spliced ESTs Zebrafish ESTs That Have Been Spliced
Zebrafish ESTs Zebrafish ESTs Including Unspliced
Zebrafish mRNAs Zebrafish mRNAs from GenBank
-   Expression and Regulation    
Wild Type Array Zon Lab Expression data for Wild Type Zebrafish
Affy Zebrafish Alignments of Affymetrix Sequences from Zebrafish Chip
UMass ChIP-Seq U Mass ChIP-Seq
-   Comparative Genomics    
Medaka Chain/Net Medaka (Oct. 2005 (NIG/UT MEDAKA1/oryLat2)), Chain and Net Alignments
Fugu Chain/Net Fugu (Oct. 2004 (JGI 4.0/fr2)), Chain and Net Alignments
Tetraodon Chain/Net Tetraodon (Feb. 2004 (Genoscope 7/tetNig1)), Chain and Net Alignments
Opossum Chain/Net Opossum (Oct. 2006 (Broad/monDom5)), Chain and Net Alignments
Mouse Chain/Net Mouse (July 2007 (NCBI37/mm9)), Chain and Net Alignments
Human Chain/Net Human (Feb. 2009 (GRCh37/hg19)), Chain and Net Alignments
-   Variation and Repeats    
Interrupted Rpts Fragments of Interrupted Repeats Joined by RepeatMasker ID
Microsatellite Microsatellites - Di-nucleotide and Tri-nucleotide Repeats
Simple Repeats Simple Tandem Repeats by TRF
RepeatMasker Repeating Elements by RepeatMasker