Control track and group visibility more selectively below.
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Base Position |
| Chromosome position in bases. (Clicks here zoom in 3x) |
BAC End Pairs |
| BAC End Pairs |
Uncertified |
| Uncertified Assembly Regions |
Assembly |
| Assembly from Fragments |
Gap |
| Gap Locations |
GC Percent |
| GC Percent in 5-Base Windows |
Quality Scores |
| Dog Sequencing Quality Scores |
Restr Enzymes |
| Restriction Enzymes from REBASE |
Short Match |
| Perfect Matches to Short Sequence () |
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RefSeq Genes |
| RefSeq Genes |
AUGUSTUS |
| AUGUSTUS ab initio gene predictions v3.1 |
Ensembl Genes |
| Ensembl Genes |
Genscan Genes |
| Genscan Gene Predictions |
Human Proteins |
| Human Proteins Mapped by Chained tBLASTn |
N-SCAN |
| N-SCAN Gene Predictions |
Other RefSeq |
| Non-Dog RefSeq Genes |
tRNA Genes |
| Transfer RNA Genes Identified with tRNAscan-SE |
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PolyA-Seq |
| Poly(A)-sequencing from Merck Research Laboratories |
Dog ESTs |
| Dog ESTs Including Unspliced |
Dog mRNAs |
| Dog mRNAs from GenBank |
Other mRNAs |
| Non-Dog mRNAs from GenBank |
Spliced ESTs |
| Dog ESTs That Have Been Spliced |
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CpG Islands |
| CpG Islands (Islands < 300 Bases are Light Green) |
CpG Islands |
| CpG Islands (Islands < 300 Bases are Light Green) |
Unmasked CpG |
| CpG Islands on All Sequence (Islands < 300 Bases are Light Green) |
NHGRI BiP |
| ENCODE NHGRI Elnitski Bidirectional Promoters |
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Conservation |
| 4-Way Multiz Alignment & Conservation |
Panda Chain/Net |
| Panda (Dec. 2009 (BGI-Shenzhen 1.0/ailMel1)), Chain and Net Alignments |
Horse Chain/Net |
| Horse (Sep. 2007 (Broad/equCab2)), Chain and Net Alignments |
Cow Chain/Net |
| Cow (Oct. 2011 (Baylor Btau_4.6.1/bosTau7)), Chain and Net Alignments |
Rat Chain/Net |
| Rat (Nov. 2004 (Baylor 3.4/rn4)), Chain and Net Alignments |
Mouse Chain/Net |
| Mouse (July 2007 (NCBI37/mm9)), Chain and Net Alignments |
Marmoset Chain/Net |
| Marmoset (March 2009 (WUGSC 3.2/calJac3)), Chain and Net Alignments |
Cat Chain/Net |
| Cat (Dec. 2008 (NHGRI/GTB V17e/felCat4)), Chain and Net Alignments |
Chimp Chain/Net |
| Chimp (Oct. 2010 (CGSC 2.1.3/panTro3)), Chain and Net Alignments |
Human Chain/Net |
| Human (Feb. 2009 (GRCh37/hg19)), Chain and Net Alignments |
Opossum Chain/Net |
| Opossum (Oct. 2006 (Broad/monDom5)), Chain and Net Alignments |
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RepeatMasker |
| Repeating Elements by RepeatMasker |
Microsatellite |
| Microsatellites - Di-nucleotide and Tri-nucleotide Repeats |
Simple Repeats |
| Simple Tandem Repeats by TRF |
SNPs (131) |
| Simple Nucleotide Polymorphisms (dbSNP build 131) |
Self Chain |
| Chained Self-Alignments |
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