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Configure Tracks on UCSC Genome Browser: Cow Aug. 2006 (Baylor 3.1/bosTau3)
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-   Mapping and Sequencing    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
Assembly Assembly from Fragments
Gap Gap Locations
GC Percent GC Percent in 5-Base Windows
Quality Scores Cow Sequencing Quality Scores
Restr Enzymes Restriction Enzymes from REBASE
Short Match Perfect Matches to Short Sequence ()
-   Genes and Gene Predictions    
RefSeq Genes RefSeq Genes
AUGUSTUS AUGUSTUS ab initio gene predictions v3.1
Ensembl Genes Ensembl Genes
Geneid Genes Geneid Gene Predictions
Genscan Genes Genscan Gene Predictions
Human Proteins Human Proteins Mapped by Chained tBLASTn
MGC Genes Mammalian Gene Collection Full ORF mRNAs
Other RefSeq Non-Cow RefSeq Genes
SGP Genes SGP Gene Predictions Using Cow/Human Homology
-   mRNA and EST    
Cow ESTs Cow ESTs Including Unspliced
Cow mRNAs Cow mRNAs from GenBank
Spliced ESTs Cow ESTs That Have Been Spliced
-   Expression and Regulation    
CpG Islands CpG Islands (Islands < 300 Bases are Light Green)
     CpG Islands     CpG Islands (Islands < 300 Bases are Light Green)
     Unmasked CpG     CpG Islands on All Sequence (Islands < 300 Bases are Light Green)
-   Comparative Genomics    
Rat Chain/Net Rat (Nov. 2004 (Baylor 3.4/rn4)), Chain and Net Alignments
Mouse Chain/Net Mouse (July 2007 (NCBI37/mm9)), Chain and Net Alignments
Human Chain/Net Human (Mar. 2006 (NCBI36/hg18)), Chain and Net Alignments
-   Variation and Repeats    
RepeatMasker Repeating Elements by RepeatMasker
Simple Repeats Simple Tandem Repeats by TRF
SNPs (127) Simple Nucleotide Polymorphisms (dbSNP build 127)