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Base Position |
| Chromosome position in bases. (Clicks here zoom in 3x) |
Assembly |
| Assembly from Fragments |
Ensembl Assembly |
| Ensembl Gene Scaffold Assembly |
Gap |
| Gap Locations |
GC Percent |
| GC Percent in 5-Base Windows |
Quality Scores |
| Cat Sequencing Quality Scores |
Restr Enzymes |
| Restriction Enzymes from REBASE |
Short Match |
| Perfect Matches to Short Sequence () |
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RefSeq Genes |
| RefSeq Genes |
Ensembl Genes |
| Ensembl Genes |
Geneid Genes |
| Geneid Gene Predictions |
Genscan Genes |
| Genscan Gene Predictions |
Human Proteins |
| Human Proteins Mapped by Chained tBLASTn |
N-SCAN |
| N-SCAN Gene Predictions |
Other RefSeq |
| Non-Cat RefSeq Genes |
SGP Genes |
| SGP Gene Predictions Using Cat/Human Homology |
tRNA Genes |
| Transfer RNA Genes Identified with tRNAscan-SE |
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Cat ESTs |
| Cat ESTs Including Unspliced |
Cat mRNAs |
| Cat mRNAs from GenBank |
Spliced ESTs |
| Cat ESTs That Have Been Spliced |
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CpG Islands |
| CpG Islands (Islands < 300 Bases are Light Green) |
CpG Islands |
| CpG Islands (Islands < 300 Bases are Light Green) |
Unmasked CpG |
| CpG Islands on All Sequence (Islands < 300 Bases are Light Green) |
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Conservation |
| 4 Mammals Multiz Alignment & Conservation |
Dog Chain/Net |
| Dog (May 2005 (Broad/canFam2)), Chain and Net Alignments |
Mouse Chain/Net |
| Mouse (Feb. 2006 (NCBI36/mm8)), Chain and Net Alignments |
Human Chain/Net |
| Human (Feb. 2009 (GRCh37/hg19)), Chain and Net Alignments |
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RepeatMasker |
| Repeating Elements by RepeatMasker |
Microsatellite |
| Microsatellites - Di-nucleotide and Tri-nucleotide Repeats |
Simple Repeats |
| Simple Tandem Repeats by TRF |
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