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Configure Tracks on UCSC Genome Browser: Chimp Feb. 2011 (CSAC 2.1.4/panTro4)
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Control track and group visibility more selectively below.
-   Primate x4 NeuroDiff and Human CRISPRa    
HuLnc Field2018 bb Human lncRNA from Field et al 2018
NeuroDiff scaled cov panTro4 1p NeuroDiff sample normalized coverage from RNAseq panTro4 plus strand
NeuroDiff scaled cov panTro4 2m NeuroDiff sample normalized coverage from RNAseq panTro4 minus strand
TransMap hg19 allF2 bgp TransMap hg19 FANTOM 201703 lv3 allF2 transmap genes
-   Mapping and Sequencing    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
Gap Gap Locations
Assembly Assembly from Fragments
GC Percent GC Percent in 5-Base Windows
INSDC Accession at INSDC - International Nucleotide Sequence Database Collaboration
RefSeq Acc RefSeq Accession
Restr Enzymes Restriction Enzymes from REBASE
Short Match Perfect Matches to Short Sequence ()
-   Genes and Gene Predictions    
Genscan Genes Genscan Gene Predictions
NCBI RefSeq RefSeq genes from NCBI
Other RefSeq Non-Chimp RefSeq Genes
AUGUSTUS AUGUSTUS ab initio gene predictions v3.1
Ensembl Genes Ensembl Genes
Geneid Genes Geneid Gene Predictions
-   mRNA and EST    
Chimp mRNAs Chimp mRNAs from GenBank
Spliced ESTs Chimp ESTs That Have Been Spliced
Chimp ESTs Chimp ESTs Including Unspliced
Other mRNAs Non-Chimp mRNAs from GenBank
-   Expression and Regulation    
CpG Islands CpG Islands (Islands < 300 Bases are Light Green)
     CpG Islands     CpG Islands (Islands < 300 Bases are Light Green)
     Unmasked CpG     CpG Islands on All Sequence (Islands < 300 Bases are Light Green)
-   Comparative Genomics    
hg19 Chain/Net Human (Feb. 2009 (GRCh37/hg19)), Chain and Net Alignments
Bonobo Chain/Net Bonobo (Aug. 2015 (MPI-EVA panpan1.1/panPan2)), Chain and Net Alignments
Gorilla Chain/Net Gorilla (Mar. 2016 (GSMRT3/gorGor5)), Chain and Net Alignments
Rhesus Chain/Net Rhesus (Oct. 2010 (BGI CR_1.0/rheMac3)), Chain and Net Alignments
Tarsier Chain/Net Tarsier (Sep. 2013 (Tarsius_syrichta-2.0.1/tarSyr2)), Chain and Net Alignments
Rat Chain/Net Rat (Mar. 2012 (RGSC 5.0/rn5)), Chain and Net Alignments
Mouse Chain/Net Mouse (Dec. 2011 (GRCm38/mm10)), Chain and Net Alignments
-   Variation and Repeats    
RepeatMasker Repeating Elements by RepeatMasker
updated EVA SNP Short Genetic Variants from European Variant Archive
Interrupted Rpts Fragments of Interrupted Repeats Joined by RepeatMasker ID
Microsatellite Microsatellites - Di-nucleotide and Tri-nucleotide Repeats
Simple Repeats Simple Tandem Repeats by TRF
WM + SDust Genomic Intervals Masked by WindowMasker + SDust