Control track and group visibility more selectively below.
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CESAR Gene Annotations |
| Human exons mapped by CESAR |
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CESAR Gene Annotations |
| Human exons mapped by CESAR |
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Base Position |
| Chromosome position in bases. (Clicks here zoom in 3x) |
Assembly |
| Assembly from Fragments |
Gap |
| Gap Locations |
GC Percent |
| GC Percent in 5-Base Windows |
INSDC |
| Accession at INSDC - International Nucleotide Sequence Database Collaboration |
Quality Scores |
| Lizard Sequencing Quality Scores |
RefSeq Acc |
| RefSeq Accession |
Restr Enzymes |
| Restriction Enzymes from REBASE |
Short Match |
| Perfect Matches to Short Sequence () |
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NCBI RefSeq |
| RefSeq genes from NCBI |
AUGUSTUS |
| AUGUSTUS ab initio gene predictions v3.1 |
Ensembl Genes |
| Ensembl Genes |
Genscan Genes |
| Genscan Gene Predictions |
Human Proteins |
| Human Proteins Mapped by Chained tBLASTn |
Other RefSeq |
| Non-Lizard RefSeq Genes |
TransMap V5 |
| TransMap Alignments Version 5 |
TransMap Ensembl |
| TransMap Ensembl and GENCODE Mappings Version 5 |
TransMap RefGene |
| TransMap RefSeq Gene Mappings Version 5 |
TransMap RNA |
| TransMap GenBank RNA Mappings Version 5 |
TransMap ESTs |
| TransMap EST Mappings Version 5 |
tRNA Genes |
| Transfer RNA Genes Identified with tRNAscan-SE |
UniProt |
| UniProt SwissProt/TrEMBL Protein Annotations |
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Lizard ESTs |
| Lizard ESTs Including Unspliced |
Lizard mRNAs |
| Lizard mRNAs from GenBank |
Other mRNAs |
| Non-Lizard mRNAs from GenBank |
Spliced ESTs |
| Lizard ESTs That Have Been Spliced |
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CpG Islands |
| CpG Islands (Islands < 300 Bases are Light Green) |
CpG Islands |
| CpG Islands (Islands < 300 Bases are Light Green) |
Unmasked CpG |
| CpG Islands on All Sequence (Islands < 300 Bases are Light Green) |
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Conservation |
| Multiz Alignment & Conservation (7 Species) |
Chicken Chain/Net |
| Chicken (Mar. 2018 (GRCg6a/galGal6)), Chain and Net Alignments |
Chicken Chain/Net |
| Chicken (May 2006 (WUGSC 2.1/galGal3)), Chain and Net Alignments |
Platypus Chain/Net |
| Platypus (Mar. 2007 (WUGSC 5.0.1/ornAna1)), Chain and Net Alignments |
Mouse Chain/Net |
| Mouse (Dec. 2011 (GRCm38/mm10)), Chain and Net Alignments |
Human Chain/Net |
| Human (Feb. 2009 (GRCh37/hg19)), Chain and Net Alignments |
X. tropicalis Chain/Net |
| X. tropicalis (Jul. 2016 (Xenopus_tropicalis_v9.1/xenTro9)), Chain and Net Alignments |
Stickleback Chain/Net |
| Stickleback (Feb. 2006 (Broad/gasAcu1)), Chain and Net Alignments |
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RepeatMasker |
| Repeating Elements by RepeatMasker |
Interrupted Rpts |
| Fragments of Interrupted Repeats Joined by RepeatMasker ID |
Microsatellite |
| Microsatellites - Di-nucleotide and Tri-nucleotide Repeats |
Simple Repeats |
| Simple Tandem Repeats by TRF |
WM + SDust |
| Genomic Intervals Masked by WindowMasker + SDust |
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