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Configure Tracks on UCSC Genome Browser: Platypus Mar. 2007 (WUGSC 5.0.1/ornAna1)
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Control track and group visibility more selectively below.
-   CESAR Gene Mappings    
CESAR Gene Annotations Human exons mapped by CESAR
-   Mapping and Sequencing    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
WSSD Coverage Regions Assayed for SDD
Assembly Assembly from Fragments
Gap Gap Locations
GC Percent GC Percent in 5-Base Windows
Quality Scores Platypus Sequencing Quality Scores
Restr Enzymes Restriction Enzymes from REBASE
Short Match Perfect Matches to Short Sequence ()
-   Genes and Gene Predictions    
RefSeq Genes RefSeq Genes
AUGUSTUS AUGUSTUS ab initio gene predictions v3.1
Ensembl Genes Ensembl Genes
Human Proteins Human Proteins Mapped by Chained tBLASTn
Other RefSeq Non-Platypus RefSeq Genes
tRNA Genes Transfer RNA Genes Identified with tRNAscan-SE
-   mRNA and EST    
Other mRNAs Non-Platypus mRNAs from GenBank
Platypus ESTs Platypus ESTs Including Unspliced
Platypus mRNAs Platypus mRNAs from GenBank
Spliced ESTs Platypus ESTs That Have Been Spliced
-   Expression and Regulation    
CpG Islands CpG Islands (Islands < 300 Bases are Light Green)
     CpG Islands     CpG Islands (Islands < 300 Bases are Light Green)
     Unmasked CpG     CpG Islands on All Sequence (Islands < 300 Bases are Light Green)
-   Comparative Genomics    
Conservation 6 Species Multiz Alignment & Conservation
Most Conserved PhastCons Conserved Elements
Opossum Chain/Net Opossum (Oct. 2006 (Broad/monDom5)), Chain and Net Alignments
Horse Chain/Net Horse (Sep. 2007 (Broad/equCab2)), Chain and Net Alignments
Cow Chain/Net Cow (Oct. 2011 (Baylor Btau_4.6.1/bosTau7)), Chain and Net Alignments
Mouse Chain/Net Mouse (Dec. 2011 (GRCm38/mm10)), Chain and Net Alignments
Marmoset Chain/Net Marmoset (June 2007 (WUGSC 2.0.2/calJac1)), Chain and Net Alignments
Orangutan Chain/Net Orangutan (July 2007 (WUGSC 2.0.2/ponAbe2)), Chain and Net Alignments
Human Chain/Net Human (Feb. 2009 (GRCh37/hg19)), Chain and Net Alignments
Lizard Chain/Net Lizard (May 2010 (Broad AnoCar2.0/anoCar2)), Chain and Net Alignments
Chicken Chain/Net Chicken (May 2006 (WUGSC 2.1/galGal3)), Chain and Net Alignments
-   Variation and Repeats    
RepeatMasker Repeating Elements by RepeatMasker
Interrupted Rpts Fragments of Interrupted Repeats Joined by RepeatMasker ID
Microsatellite Microsatellites - Di-nucleotide and Tri-nucleotide Repeats
Segmental Dups Duplications of >1000 Bases of Non-RepeatMasked Sequence
Simple Repeats Simple Tandem Repeats by TRF