Control track and group visibility more selectively below.
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Base Position |
| Chromosome position in bases. (Clicks here zoom in 3x) |
Assembly |
| Assembly from Fragments |
Gap |
| Gap Locations |
GC Percent |
| GC Percent in 5-Base Windows |
Quality Scores |
| Stickleback Sequencing Quality Scores |
Restr Enzymes |
| Restriction Enzymes from REBASE |
Short Match |
| Perfect Matches to Short Sequence () |
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RefSeq Genes |
| RefSeq Genes |
AUGUSTUS |
| AUGUSTUS ab initio gene predictions v3.1 |
Ensembl Genes |
| Ensembl Genes |
Genscan Genes |
| Genscan Gene Predictions |
Human Proteins |
| Human Proteins Mapped by Chained tBLASTn |
N-SCAN |
| N-SCAN Gene Predictions |
Other RefSeq |
| Non-Stickleback RefSeq Genes |
TransMap V5 |
| TransMap Alignments Version 5 |
TransMap Ensembl |
| TransMap Ensembl and GENCODE Mappings Version 5 |
TransMap RefGene |
| TransMap RefSeq Gene Mappings Version 5 |
TransMap RNA |
| TransMap GenBank RNA Mappings Version 5 |
TransMap ESTs |
| TransMap EST Mappings Version 5 |
tRNA Genes |
| Transfer RNA Genes Identified with tRNAscan-SE |
UniProt |
| UniProt SwissProt/TrEMBL Protein Annotations |
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Other mRNAs |
| Non-Stickleback mRNAs from GenBank |
Spliced ESTs |
| Stickleback ESTs That Have Been Spliced |
Stickleback ESTs |
| Stickleback ESTs Including Unspliced |
Stickleback mRNAs |
| Stickleback mRNAs from GenBank |
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Conservation |
| 8 Species Multiz Alignment & Conservation |
Fugu Chain/Net |
| Fugu (Oct. 2011 (FUGU5/fr3)), Chain and Net Alignments |
Chicken Chain/Net |
| Chicken (Mar. 2018 (GRCg6a/galGal6)), Chain and Net Alignments |
Medaka Chain/Net |
| Medaka (Oct. 2005 (NIG/UT MEDAKA1/oryLat2)), Chain and Net Alignments |
Tetraodon Chain/Net |
| Tetraodon (Mar. 2007 (Genoscope 8.0/tetNig2)), Chain and Net Alignments |
Zebrafish Chain/Net |
| Zebrafish (Jul. 2010 (Zv9/danRer7)), Chain and Net Alignments |
Lizard Chain/Net |
| Lizard (May 2010 (Broad AnoCar2.0/anoCar2)), Chain and Net Alignments |
Chicken Chain/Net |
| Chicken (May 2006 (WUGSC 2.1/galGal3)), Chain and Net Alignments |
Mouse Chain/Net |
| Mouse (Dec. 2011 (GRCm38/mm10)), Chain and Net Alignments |
Human Chain/Net |
| Human (Feb. 2009 (GRCh37/hg19)), Chain and Net Alignments |
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RepeatMasker |
| Repeating Elements by RepeatMasker |
Microsatellite |
| Microsatellites - Di-nucleotide and Tri-nucleotide Repeats |
Simple Repeats |
| Simple Tandem Repeats by TRF |
WM + SDust |
| Genomic Intervals Masked by WindowMasker + SDust |
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