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Configure Tracks on UCSC Genome Browser: X. tropicalis Nov. 2019 (UCB_Xtro_10.0/xenTro10)
  Tracks:    Groups:
Control track and group visibility more selectively below.
-   MethBase2    
xenTro10 methylome studies xenTro10 methylome studies
     SRP414632     Age-associated DNA methylation changes in Xenopus frogs [Hindlimb Webbing]
     SRP057505     Active DNA demethylation at enhancers during the vertebrate phylotypic period [Brain, Whole Embryo, sox10+]
     Common     Common methbase tracks for the xenTro10 assembly
-   Mapping and Sequencing    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
Gap Gap Locations
Assembly Assembly from Fragments
GC Percent GC Percent in 5-Base Windows
INSDC Accession at INSDC - International Nucleotide Sequence Database Collaboration
RefSeq Acc RefSeq Accession
Restr Enzymes Restriction Enzymes from REBASE
Short Match Perfect Matches to Short Sequence ()
-   Genes and Gene Predictions    
NCBI RefSeq RefSeq genes from NCBI
Other RefSeq Non-X. tropicalis RefSeq Genes
AUGUSTUS AUGUSTUS ab initio gene predictions v3.1
CRISPR Targets CRISPR/Cas9 -NGG Targets, whole genome
Genscan Genes Genscan Gene Predictions
UniProt UniProt SwissProt/TrEMBL Protein Annotations
-   mRNA and EST    
X. tropicalis mRNAs X. tropicalis mRNAs from GenBank
Spliced ESTs X. tropicalis ESTs That Have Been Spliced
X. tropicalis ESTs X. tropicalis ESTs Including Unspliced
-   Expression and Regulation    
CpG Islands CpG Islands (Islands < 300 Bases are Light Green)
     CpG Islands     CpG Islands (Islands < 300 Bases are Light Green)
     Unmasked CpG     CpG Islands on All Sequence (Islands < 300 Bases are Light Green)
-   Comparative Genomics    
Mouse Chain/Net Mouse (Jun. 2020 (GRCm39/mm39)), Chain and Net Alignments
mm10 ChainNet Mouse (Dec. 2011 (GRCm38/mm10)), Chain and Net Alignments
Human Chain/Net Human (Dec. 2013 (GRCh38/hg38)), Chain and Net Alignments
-   Variation and Repeats    
RepeatMasker Repeating Elements by RepeatMasker
Interrupted Rpts Fragments of Interrupted Repeats Joined by RepeatMasker ID
Microsatellite Microsatellites - Di-nucleotide and Tri-nucleotide Repeats
Simple Repeats Simple Tandem Repeats by TRF
WM + SDust Genomic Intervals Masked by WindowMasker + SDust