Control track and group visibility more selectively below.
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| Rat methylome studies |
| Rat methylome studies |
| SRP299084 |
| Analysis of ctDNA methylation induced by ionizing to different ograns [Brain, Lung, Serum, Skin] |
| SRP055171 |
| Sex differences in methylation in the developing pre optic area [Brain-preoptic area] |
| SRP221276 |
| Imprinting effects of UBE3A loss on synaptic gene networks and Wnt signaling pathways [Hypothalamus] |
| SRP107963 |
| Integrative epigenomic analyses of early-life hypothalamic response to augmented maternal care [BiSulfite-seq] [Hypothalamus] |
| SRP105091 |
| Iron-Deficiency in Pregnancy: Effects on the Rat Hippocampus [Hippocampus] |
| SRP103785 |
| DNA Methylation of Synaptic Genes in the Prefrontal Cortex is Associated with Aging and Age-Related Cognitive Impairment [Medial Prefrontal Cortex] |
| SRP536955 |
| Estrogen receptor signaling alters sperm DNA methylation landscape in adult male rats [Caudal Sperm] |
| SRP505029 |
| Epigenetic upregulation of carotid body angiotensin signaling increase blood pressure. [Carotid Body] |
| SRP093620 |
| Whole Genome Bisulfite sequencing for liver DNA methylation analysis of rat exposed to 0.05% Pb [Liver] |
| SRP483279 |
| Rattus norvegicus Epigenomics [Embryo] |
| SRP079366 |
| Bayesian bisulphite sequencing analysis reveals changes in macrophage DNA methylation in glomerulonephritis [Primary Macrophages] |
| SRP424555 |
| Rattus norvegicus Genome sequencing [Rat] |
| SRP392105 |
| Placental ischemia disrupts DNA methylation patterns of distal regulatory regions in rat [Placenta, Planceta] |
| SRP072273 |
| Whole genome DNA methylation profile of sperm cells in mammalian species [Sperm] |
| SRP375219 |
| DNA methylation dynamics during esophageal epithelial regeneration following repair with acellular silk fibroin grafts in rat [Esophageal] |
| SRP342917 |
| Rat and mouse imprintomes (allele-specific DNA methylomes) [EPC, Epiblast] |
| SRP337929 |
| Epigenomic profiling of liver reveals the key regulators of heat stress in rats [Liver] |
| SRP331912 |
| Methyl-seq Rat [Sperm] |
| SRP062855 |
| Rattus norvegicus genome resequencing [Sperm] |
| SRP061547 |
| Rattus norvegicus Raw sequence reads [NA] |
| SRP306996 |
| Examination of CA1 hippocampal DNA methylation as a mechanism for closing of estrogen's critical window [Brain Hippocampal] |
| ERP139499 |
| Whole genome bisulfite sequencing of liver samples of five mammals (human, rhesus macaque, mouse, rat and dog) [Liver] |
| ERP002215 |
| Genetic analysis of the cardiac methylome at single nucleotide resolution in the Spontaneously Hypertensive Rat and the Brown Norway Rat [Heart] |
| DRP004151 |
| Whole genome bisulfite sequencing of rat germ cells [Oocyte, Sperm] |
| Common |
| Common methbase tracks for the rn7 assembly |
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| Base Position |
| Chromosome position in bases. (Clicks here zoom in 3x) |
| Gap |
| Gap Locations |
| Assembly |
| Assembly from Fragments |
| GC Percent |
| GC Percent in 5-Base Windows |
| INSDC |
| Accession at INSDC - International Nucleotide Sequence Database Collaboration |
| RefSeq Acc |
| RefSeq Accession |
| Restr Enzymes |
| Restriction Enzymes from REBASE |
| Short Match |
| Perfect Matches to Short Sequence () |
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| NCBI RefSeq |
| RefSeq genes from NCBI |
| Other RefSeq |
| Non-Rat RefSeq Genes |
| AUGUSTUS |
| AUGUSTUS ab initio gene predictions v3.1 |
| CRISPR Targets |
| CRISPR/Cas9 -NGG Targets, whole genome |
| Genscan Genes |
| Genscan Gene Predictions |
| MGC Genes |
| Mammalian Gene Collection Full ORF mRNAs |
| UniProt |
| UniProt SwissProt/TrEMBL Protein Annotations |
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| Rat mRNAs |
| Rat mRNAs from GenBank |
| Spliced ESTs |
| Rat ESTs That Have Been Spliced |
| Other mRNAs |
| Non-Rat mRNAs from GenBank |
| Rat ESTs |
| Rat ESTs Including Unspliced |
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| CpG Islands |
| CpG Islands (Islands < 300 Bases are Light Green) |
| CpG Islands |
| CpG Islands (Islands < 300 Bases are Light Green) |
| Unmasked CpG |
| CpG Islands on All Sequence (Islands < 300 Bases are Light Green) |
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| mm10 ChainNet |
| Mouse (Dec. 2011 (GRCm38/mm10)), Chain and Net Alignments |
| Mouse Chain/Net |
| Mouse (Jun. 2020 (GRCm39/mm39)), Chain and Net Alignments |
| Human Chain/Net |
| Human (Dec. 2013 (GRCh38/hg38)), Chain and Net Alignments |
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| RepeatMasker |
| Repeating Elements by RepeatMasker |
| updated
EVA SNP |
| Short Genetic Variants from European Variant Archive |
| Interrupted Rpts |
| Fragments of Interrupted Repeats Joined by RepeatMasker ID |
| Microsatellite |
| Microsatellites - Di-nucleotide and Tri-nucleotide Repeats |
| Simple Repeats |
| Simple Tandem Repeats by TRF |
| WM + SDust |
| Genomic Intervals Masked by WindowMasker + SDust |
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