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Configure Tracks on UCSC Genome Browser: Sheep Nov. 2015 (Oar_v4.0/oviAri4)
  Tracks:    Groups:
Control track and group visibility more selectively below.
-   MethBase2    
Sheep methylome studies Sheep methylome studies
     SRP277012     Next Generation Sequencing Facilitates LncRNAs and Methylation Regulation Analysis of Sheep Adipose and Muscle Transcriptomes Induced by Allium mongolicum Regel Extracts [Longissimus Dorsi Muscle, Subcutaneous Fat]
     SRP255584     DNA Methylation Profiles During Sheep Skeletal Muscle Development Using Whole-Genome Bisulfite Sequencing [Skeletal Muscle]
     SRP578377     The effect of RNA methylation on gene expression outweighs that of DNA methylation [Caruncle, Mammary, Spleen]
     SRP106517     Epigenetic characterization of tissues from three germ layers isolated from sheep fetuses [Endodermal]
     SRP462530     Ovis aries Raw sequence reads [Muscle]
     SRP428601     Global DNA Methylation, miRNA and mRNA Variations [Muscle]
     SRP424142     Maternal gestational nutrition perturbs offspring sperm epigenome in sheep [BiSulfite-seq] [Semen]
     SRP410061     Whole-genome DNA methylation analysis of Tan sheep and Hu sheep and their offspring [Longissimus Dorsi]
     SRP392500     Comparative epigenomic analyses of DNA methylomes and gene expression during ruminant evolution [Brain, Muscle, Sperm]
     SRP382771     Comparative analyses of DNA methylomes in the liver among three ruminants [Liver]
     SRP363369     whole-genome bisulfite sequencing [muscle of HFLP, muscle of LFHP]
     SRP350478     Analysis of Chinese sheep preimplantation embryo development and block by single-cell DNA methylome sequencing [Embryo]
     SRP338613     Detection of genome-wide methylation changes in prion-infected central nervous system [Brain]
     SRP335709     The DNA methylation and RNA m6A for the Merinos Sheep of Wool Atavism [Skin]
     SRP334368     WGBS was performed to identify DNA methylation profiles in ovaries from Hu sheep with different prolificacy and genotype [Ovary]
     SRP063378     DNA methylome of the dizygotic sheep [Longissimus Dorsi]
     SRP320067     DNA methylation and gene expression profiles of hypothalamus in ewe [Hypothalamus]
     SRP059746     The epigenetic and transcriptional basis of a developmental transition from brown to white adipose tissue [Perirenal Adipose]
     ERP122667     Tissue specific whole genome bisulphite sequencing of Rambouillet sheep Benz2616 [Biceps Femoris, Cerebellum, Frontal Cortex, Longissimus Dorsi, Lung, Ovary, Rumen]
     Common     Common methbase tracks for the oviAri4 assembly
-   Mapping and Sequencing    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
Assembly Assembly from Fragments
Gap Gap Locations
GC Percent GC Percent in 5-Base Windows
INSDC Accession at INSDC - International Nucleotide Sequence Database Collaboration
RefSeq Acc RefSeq Accession
Restr Enzymes Restriction Enzymes from REBASE
Short Match Perfect Matches to Short Sequence ()
-   Genes and Gene Predictions    
NCBI RefSeq RefSeq genes from NCBI
AUGUSTUS AUGUSTUS ab initio gene predictions v3.1
Genscan Genes Genscan Gene Predictions
Other RefSeq Non-Sheep RefSeq Genes
TransMap V5 TransMap Alignments Version 5
     TransMap Ensembl     TransMap Ensembl and GENCODE Mappings Version 5
     TransMap RefGene     TransMap RefSeq Gene Mappings Version 5
     TransMap RNA     TransMap GenBank RNA Mappings Version 5
     TransMap ESTs     TransMap EST Mappings Version 5
UniProt UniProt SwissProt/TrEMBL Protein Annotations
-   mRNA and EST    
Sheep ESTs Sheep ESTs Including Unspliced
Sheep mRNAs Sheep mRNAs from GenBank
Spliced ESTs Sheep ESTs That Have Been Spliced
-   Expression and Regulation    
CpG Islands CpG Islands (Islands < 300 Bases are Light Green)
     CpG Islands     CpG Islands (Islands < 300 Bases are Light Green)
     Unmasked CpG     CpG Islands on All Sequence (Islands < 300 Bases are Light Green)
-   Comparative Genomics    
mm10 ChainNet Mouse (Dec. 2011 (GRCm38/mm10)), Chain and Net Alignments
Mouse Chain/Net Mouse (Jun. 2020 (GRCm39/mm39)), Chain and Net Alignments
Human Chain/Net Human (Dec. 2013 (GRCh38/hg38)), Chain and Net Alignments
-   Variation and Repeats    
RepeatMasker Repeating Elements by RepeatMasker
updated EVA SNP Short Genetic Variants from European Variant Archive
Interrupted Rpts Fragments of Interrupted Repeats Joined by RepeatMasker ID
Microsatellite Microsatellites - Di-nucleotide and Tri-nucleotide Repeats
Simple Repeats Simple Tandem Repeats by TRF
WM + SDust Genomic Intervals Masked by WindowMasker + SDust