Control track and group visibility more selectively below.
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CESAR Gene Annotations |
| Human exons mapped by CESAR |
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Base Position |
| Chromosome position in bases. (Clicks here zoom in 3x) |
Scaffolds |
| Assembly Scaffolds |
Assembly |
| Assembly from Fragments |
Gap |
| Gap Locations |
GC Percent |
| GC Percent in 5-Base Windows |
INSDC |
| Accession at INSDC - International Nucleotide Sequence Database Collaboration |
Restr Enzymes |
| Restriction Enzymes from REBASE |
Short Match |
| Perfect Matches to Short Sequence () |
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AUGUSTUS |
| AUGUSTUS ab initio gene predictions v3.1 |
Ensembl Genes |
| Ensembl Genes |
Genscan Genes |
| Genscan Gene Predictions |
Human Proteins |
| Human Proteins Mapped by Chained tBLASTn |
N-SCAN |
| N-SCAN Gene Predictions |
Other RefSeq |
| Non-Turkey RefSeq Genes |
tRNA Genes |
| Transfer RNA Genes Identified with tRNAscan-SE |
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Other mRNAs |
| Non-Turkey mRNAs from GenBank |
Spliced ESTs |
| Turkey ESTs That Have Been Spliced |
Turkey ESTs |
| Turkey ESTs Including Unspliced |
Turkey mRNAs |
| Turkey mRNAs from GenBank |
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CpG Islands |
| CpG Islands (Islands < 300 Bases are Light Green) |
CpG Islands |
| CpG Islands (Islands < 300 Bases are Light Green) |
Unmasked CpG |
| CpG Islands on All Sequence (Islands < 300 Bases are Light Green) |
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Chicken Chain/Net |
| Chicken (May 2006 (WUGSC 2.1/galGal3)), Chain and Net Alignments |
Zebra finch Chain/Net |
| Zebra finch (Feb. 2013 (WashU taeGut324/taeGut2)), Chain and Net Alignments |
Medium ground finch Chain/Net |
| Medium ground finch (Apr. 2012 (GeoFor_1.0/geoFor1)), Chain and Net Alignments |
Opossum Chain/Net |
| Opossum (Oct. 2006 (Broad/monDom5)), Chain and Net Alignments |
Rat Chain/Net |
| Rat (Nov. 2004 (Baylor 3.4/rn4)), Chain and Net Alignments |
Mouse Chain/Net |
| Mouse (Dec. 2011 (GRCm38/mm10)), Chain and Net Alignments |
Human Chain/Net |
| Human (Feb. 2009 (GRCh37/hg19)), Chain and Net Alignments |
X. tropicalis Chain/Net |
| X. tropicalis (Nov. 2009 (JGI 4.2/xenTro3)), Chain and Net Alignments |
Zebrafish Chain/Net |
| Zebrafish (Jul. 2010 (Zv9/danRer7)), Chain and Net Alignments |
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RepeatMasker |
| Repeating Elements by RepeatMasker |
Interrupted Rpts |
| Fragments of Interrupted Repeats Joined by RepeatMasker ID |
Microsatellite |
| Microsatellites - Di-nucleotide and Tri-nucleotide Repeats |
Simple Repeats |
| Simple Tandem Repeats by TRF |
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