Control track and group visibility more selectively below.
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Chicken methylome studies |
| Chicken methylome studies |
SRP295626 |
| WGBS of liver for chicken with fatty liver [Liver] |
SRP252164 |
| The dynamic methylome of the broiler chicken as a resource for livestock performance biomarker development [Breast, Ileum, Jejunum, Spleen] |
SRP235124 |
| Evolution of CpH methylation in vertebrate brains [Brain, Cortex, Forebrain] |
SRP233032 |
| Whole-genome bisulfite sequencing of hypothalamus and ovary in Langshan chicken [Hypothalamus, Ovary] |
SRP188450 |
| A homeostasis hypothesis of avian influenza resistance in chickens [Lung] |
SRP041344 |
| Single-base resolution DNA methylation profiles of two highly inbred chicken lines, Leghorn and Fayoumi, by whole-genome bisulfite sequencing (MethylC-seq). [Lung] |
SRP041054 |
| Evolutionary consequences of DNA methylation on the GC content in vertebrate genomes [Sperm] |
SRP028242 |
| Gallus gallus Epigenomics |
SRP033603 |
| Gallus gallus transcriptome [Embryo] |
SRP108572 |
| Whole genome DNA methylation sequencing of the chicken retina, cornea and brain [Brain, Cornea, Retina] |
SRP504622 |
| Influence of DNA-methylation at multiple stages of limb chondrogenesis [Hindlimb 28HH third interdigit] |
SRP092806 |
| Gallus gallus Epigenomics [Breast Muscle] |
SRP466458 |
| Gallus gallus strain:blue eggshell strain | breed:Xuefeng Black-bone chicken Raw sequence reads [Shell Gland] |
SRP464968 |
| WGBS for chicken myoblast DM_vs_GM [Leg Muscle] |
SRP430459 |
| WGBS of chicken embryonic gonads between sexes [Gonad] |
SRP426826 |
| Sequencing of DNA methylation in chicken adipose tissue [Adipose Tissue] |
SRP387729 |
| Genome-wide DNA methylation landscape of spleens from chickens with different resistance to infection with Marek's disease [Spleen] |
SRP359458 |
| Changes in DNA Methylation Hallmark Alterations In Chromatin Accessibility And Gene Expression For Eye Lens Differentiation [Bisulfite-seq] [Lens Epithelial, Lens Fiber] |
SRP321573 |
| Conservation and divergence of DNA methylation patterns and functions in vertebrates [Primary Dermal Fibroblasts, Psoas Muscle] |
SRP309852 |
| Gallus gallus strain:chicken Raw sequence reads [Mandibular Condyle] |
SRP304961 |
| Gallus gallus Raw sequence reads [Leg Muscle] |
SRP304425 |
| Whole-genome bisulfite sequencing of Chinese indigenous chicken resources [Blood] |
ERP126680 |
| GENE-SWITCH Chicken DNA methylation with Whole Genome bisulfite sequencing (WGBS) [AIL Embryo E8 pool3 hindlimb muscle, AIL Embryo E8 pool3 skin, AIL Embryo E8 pool3 small intestine, AIL Embryo E8 pool4 hindbrain, AIL Embryo E8 pool4 kidney, AIL Embryo E8 pool4 liver, AIL Embryo E8 pool4 lung, Cerebellum, Hindlimb Muscle, Kidney, Liver, Lung, Skin Of Back, Small Intestine] |
ERP144515 |
| FAANG Chicken SL-29 cell line |
Common |
| Common methbase tracks for the galGal6 assembly |
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Base Position |
| Chromosome position in bases. (Clicks here zoom in 3x) |
Assembly |
| Assembly from Fragments |
Gap |
| Gap Locations |
GC Percent |
| GC Percent in 5-Base Windows |
GRC Incident |
| GRC Incident Database |
INSDC |
| Accession at INSDC - International Nucleotide Sequence Database Collaboration |
RefSeq Acc |
| RefSeq Accession |
Restr Enzymes |
| Restriction Enzymes from REBASE |
Short Match |
| Perfect Matches to Short Sequence () |
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NCBI RefSeq |
| RefSeq gene predictions from NCBI |
AUGUSTUS |
| AUGUSTUS ab initio gene predictions v3.1 |
CRISPR 10K |
| CRISPR/Cas9 Sp. Pyog. target sites (exons +/- 10,000 bp) |
CRISPR Regions 10K |
| Genome regions processed to find CRISPR/Cas9 target sites (exons +/- 10,000 bp) |
CRISPR Targets 10K |
| CRISPR/Cas9 -NGG Targets (exons +/- 10,000 bp) |
Ensembl Genes |
| Ensembl Genes |
Genscan Genes |
| Genscan Gene Predictions |
Other RefSeq |
| Non-Chicken RefSeq Genes |
TransMap V5 |
| TransMap Alignments Version 5 |
TransMap Ensembl |
| TransMap Ensembl and GENCODE Mappings Version 5 |
TransMap RefGene |
| TransMap RefSeq Gene Mappings Version 5 |
TransMap RNA |
| TransMap GenBank RNA Mappings Version 5 |
TransMap ESTs |
| TransMap EST Mappings Version 5 |
UniProt |
| UniProt SwissProt/TrEMBL Protein Annotations |
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Chicken ESTs |
| Chicken ESTs Including Unspliced |
Chicken mRNAs |
| Chicken mRNAs from GenBank |
Other mRNAs |
| Non-Chicken mRNAs from GenBank |
Spliced ESTs |
| Chicken ESTs That Have Been Spliced |
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CpG Islands |
| CpG Islands (Islands < 300 Bases are Light Green) |
CpG Islands |
| CpG Islands (Islands < 300 Bases are Light Green) |
Unmasked CpG |
| CpG Islands on All Sequence (Islands < 300 Bases are Light Green) |
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Conservation |
| Vertebrate Multiz Alignment & Conservation (77 Species) |
Birds Chain/Net |
| Birds Chain and Net Alignments |
Fish Chain/Net |
| Fish Chain and Net Alignments |
Vertebrate Chain/Net |
| Vertebrate Chain and Net Alignments |
Chicken Chain/Net |
| Chicken (Jan. 2021 (GRCg7b/GCF_016699485.2)), Chain and Net Alignments |
Mouse Chain/Net |
| Mouse (Jun. 2020 (GRCm39/mm39)), Chain and Net Alignments |
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RepeatMasker |
| Repeating Elements by RepeatMasker |
updated
EVA SNP |
| Short Genetic Variants from European Variant Archive |
Interrupted Rpts |
| Fragments of Interrupted Repeats Joined by RepeatMasker ID |
Microsatellite |
| Microsatellites - Di-nucleotide and Tri-nucleotide Repeats |
Simple Repeats |
| Simple Tandem Repeats by TRF |
WM + SDust |
| Genomic Intervals Masked by WindowMasker + SDust |
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