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Configure Tracks on UCSC Genome Browser: D. melanogaster Aug. 2014 (BDGP Release 6 + ISO1 MT/dm6)
  Tracks:    Groups:
Control track and group visibility more selectively below.
-   PhyloCSF    
PhyloCSF Novel v6.15 PhyloCSF Candidate Coding Regions (PCCRs) Not In flybase v6.15 Gene Set
Smoothed PhyloCSF Smoothed PhyloCSF
     PhyloCSF-3     Smoothed PhyloCSF Strand - Frame 3
     PhyloCSF-2     Smoothed PhyloCSF Strand - Frame 2
     PhyloCSF-1     Smoothed PhyloCSF Strand - Frame 1
     PhyloCSF+3     Smoothed PhyloCSF Strand + Frame 3
     PhyloCSF+2     Smoothed PhyloCSF Strand + Frame 2
     PhyloCSF+1     Smoothed PhyloCSF Strand + Frame 1
PhyloCSF Regions PhyloCSF approximate coding regions
     PhyloCSF-3Regns     PhyloCSF approximate coding regions, Strand -, Frame 3
     PhyloCSF-2Regns     PhyloCSF approximate coding regions, Strand -, Frame 2
     PhyloCSF-1Regns     PhyloCSF approximate coding regions, Strand -, Frame 1
     PhyloCSF+3Regns     PhyloCSF approximate coding regions, Strand +, Frame 3
     PhyloCSF+2Regns     PhyloCSF approximate coding regions, Strand +, Frame 2
     PhyloCSF+1Regns     PhyloCSF approximate coding regions, Strand +, Frame 1
Raw PhyloCSF Raw PhyloCSF
     PhyloCSFraw-3     Raw PhyloCSF Strand - Frame 3
     PhyloCSFraw-2     Raw PhyloCSF Strand - Frame 2
     PhyloCSFraw-1     Raw PhyloCSF Strand - Frame 1
     PhyloCSFraw+3     Raw PhyloCSF Strand + Frame 3
     PhyloCSFraw+2     Raw PhyloCSF Strand + Frame 2
     PhyloCSFraw+1     Raw PhyloCSF Strand + Frame 1
PhyloCSF Power Relative branch length of local alignment, a measure of PhyloCSF statistical power
Splice Predictions Splice Predictions
     SplicePred-     Splice Predictions For - Strand
     SplicePred+     Splice Predictions For + Strand
-   Mapping and Sequencing    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
Chromosome Band Chromosome Bands
Assembly Assembly from Fragments
Gap Gap Locations
GC Percent GC Percent in 5-Base Windows
INSDC Accession at INSDC - International Nucleotide Sequence Database Collaboration
RefSeq Acc RefSeq Accession
Restr Enzymes Restriction Enzymes from REBASE
Short Match Perfect Matches to Short Sequence ()
-   Genes and Gene Predictions    
NCBI RefSeq RefSeq genes from NCBI
AUGUSTUS AUGUSTUS ab initio gene predictions v3.1
CRISPR CRISPR/Cas9 Sp. Pyog. target sites
     CRISPR Regions     Genome regions processed to find CRISPR/Cas9 target sites (exons +/- 200 bp)
     CRISPR Targets     CRISPR/Cas9 -NGG Targets
Ensembl Genes Ensembl Genes
Genscan Genes Genscan Gene Predictions
Other RefSeq Non-D. melanogaster RefSeq Genes
Pfam in RefSeq Pfam Domains in RefSeq Genes
UniProt UniProt SwissProt/TrEMBL Protein Annotations
-   mRNA and EST    
Spliced ESTs D. melanogaster ESTs That Have Been Spliced
D. melanogaster ESTs D. melanogaster ESTs Including Unspliced
D. melanogaster mRNAs D. melanogaster mRNAs from GenBank
Other mRNAs Non-D. melanogaster mRNAs from GenBank
-   Expression and Regulation    
CpG Islands CpG Islands (Islands < 300 Bases are Light Green)
     CpG Islands     CpG Islands (Islands < 300 Bases are Light Green)
     Unmasked CpG     CpG Islands on All Sequence (Islands < 300 Bases are Light Green)
ORegAnno Regulatory elements from ORegAnno
ReMap ChIP-seq ReMap Atlas of Regulatory Regions
-   Comparative Genomics    
Conservation Multiz Alignment & Conservation (27 Species)
Cons 124 Insects Multiz Alignment & Conservation (124 insects)
Insects Chain/Net Insects Chain and Net Alignments
-   Variation and Repeats    
updated EVA SNP Short Genetic Variants from European Variant Archive
Interrupted Rpts Fragments of Interrupted Repeats Joined by RepeatMasker ID
Microsatellite Microsatellites - Di-nucleotide and Tri-nucleotide Repeats
Simple Repeats Simple Tandem Repeats by TRF
UniProt Variants UniProt/SwissProt Amino Acid Substitutions
WM + SDust Genomic Intervals Masked by WindowMasker + SDust
RepeatMasker Repeating Elements by RepeatMasker