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Configure Tracks on UCSC Genome Browser: C. intestinalis Apr. 2011 (Kyoto KH/ci3)
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-   JASPAR TFBS    
JASPAR2022 TFBS ci3 TFBS predictions in Ciona intestinalis (ci3) for all profiles in the JASPAR CORE urochordates collection (2022)
-   Mapping and Sequencing    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
Assembly Assembly from Fragments
Gap Gap Locations
GC Percent GC Percent in 5-Base Windows
INSDC Accession at INSDC - International Nucleotide Sequence Database Collaboration
RefSeq Acc RefSeq Accession
Restr Enzymes Restriction Enzymes from REBASE
Short Match Perfect Matches to Short Sequence ()
-   Genes and Gene Predictions    
RefSeq Genes RefSeq Genes
Ensembl Genes Ensembl Genes
Genscan Genes Genscan Gene Predictions
Other RefSeq Non-C. intestinalis RefSeq Genes
UniProt UniProt SwissProt/TrEMBL Protein Annotations
-   mRNA and EST    
Spliced ESTs C. intestinalis ESTs That Have Been Spliced
C. intestinalis ESTs C. intestinalis ESTs Including Unspliced
C. intestinalis mRNAs C. intestinalis mRNAs from GenBank
-   Expression and Regulation    
CpG Islands CpG Islands (Islands < 300 Bases are Light Green)
     CpG Islands     CpG Islands (Islands < 300 Bases are Light Green)
     Unmasked CpG     CpG Islands on All Sequence (Islands < 300 Bases are Light Green)
-   Comparative Genomics    
S. purpuratus Chain/Net S. purpuratus (Sep. 2006 (Baylor 2.1/strPur2)), Chain and Net Alignments
C. elegans Chain/Net C. elegans (Feb. 2013 (WBcel235/ce11)), Chain and Net Alignments
-   Variation and Repeats    
updated EVA SNP Short Genetic Variants from European Variant Archive
Interrupted Rpts Fragments of Interrupted Repeats Joined by RepeatMasker ID
Microsatellite Microsatellites - Di-nucleotide and Tri-nucleotide Repeats
Simple Repeats Simple Tandem Repeats by TRF
WM + SDust Genomic Intervals Masked by WindowMasker + SDust
RepeatMasker Repeating Elements by RepeatMasker