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Configure Tracks on UCSC Genome Browser: Dog Oct. 2020 (Dog10K_Boxer_Tasha/canFam6)
  Tracks:    Groups:
Control track and group visibility more selectively below.
-   MethBase2    
Dog methylome studies Dog methylome studies
     SRP252679     Quantitative translation of dog-to-human aging by conserved remodeling of the DNA methylome [Whole Blood]
     SRP049936     DNA methylation in mammalian placentas [Cerebrum, Cordblood, Extraembryonic Membrane, Placenta, Trophoblasts]
     SRP219663     Canis lupus familiaris isolate:Nala | breed:German Shepherd Genome sequencing and assembly [Blood]
     SRP483528     Whole-genome bisulfite sequencing in the whole blood of three dog breeds [Whole Blood]
     SRP018114     Whole genome bisulfite sequencing of MDCK cells, before and after TGFB-induced epithelial-mesenchymal transition [Kidney]
     SRP405758     Comparative analysis of epigenomic evolution in mammals [Liver, Skeleton Muscle]
     SRP072273     Whole genome DNA methylation profile of sperm cells in mammalian species [Sperm]
     SRP065186     Stochastic anomaly of methylome but persistent SRY hypermethylation in disorder of sex development in canine somatic cell nuclear transfer [Skin Fibroblast]
     SRP321573     Conservation and divergence of DNA methylation patterns and functions in vertebrates [Primary Dermal Fibroblasts, Psoas Muscle]
     ERP139499     Whole genome bisulfite sequencing of liver samples of five mammals (human, rhesus macaque, mouse, rat and dog) [Liver]
     Common     Common methbase tracks for the canFam6 assembly
-   Mapping and Sequencing    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
Gap Gap Locations
Assembly Assembly from Fragments
GC Percent GC Percent in 5-Base Windows
INSDC Accession at INSDC - International Nucleotide Sequence Database Collaboration
RefSeq Acc RefSeq Accession
Restr Enzymes Restriction Enzymes from REBASE
Short Match Perfect Matches to Short Sequence ()
-   Genes and Gene Predictions    
updated NCBI RefSeq RefSeq genes from NCBI
Other RefSeq Non-Dog RefSeq Genes
AUGUSTUS AUGUSTUS ab initio gene predictions v3.1
Genscan Genes Genscan Gene Predictions
UniProt UniProt SwissProt/TrEMBL Protein Annotations
-   mRNA and EST    
Dog mRNAs Dog mRNAs from GenBank
Spliced ESTs Dog ESTs That Have Been Spliced
Dog ESTs Dog ESTs Including Unspliced
Other mRNAs Non-Dog mRNAs from GenBank
-   Expression and Regulation    
CpG Islands CpG Islands (Islands < 300 Bases are Light Green)
     CpG Islands     CpG Islands (Islands < 300 Bases are Light Green)
     Unmasked CpG     CpG Islands on All Sequence (Islands < 300 Bases are Light Green)
-   Comparative Genomics    
Mouse Chain/Net Mouse (Jun. 2020 (GRCm39/mm39)), Chain and Net Alignments
Mouse Chain/Net Mouse (Dec. 2011 (GRCm38/mm10)), Chain and Net Alignments
Human Chain/Net Human (Dec. 2013 (GRCh38/hg38)), Chain and Net Alignments
-   Variation and Repeats    
RepeatMasker Repeating Elements by RepeatMasker
Interrupted Rpts Fragments of Interrupted Repeats Joined by RepeatMasker ID
Microsatellite Microsatellites - Di-nucleotide and Tri-nucleotide Repeats
Simple Repeats Simple Tandem Repeats by TRF
WM + SDust Genomic Intervals Masked by WindowMasker + SDust