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Configure Tracks on UCSC Genome Browser: A. mellifera Jan. 2005 (Baylor 2.0/apiMel2)
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-   MethBase2    
apiMel2 methylome studies apiMel2 methylome studies
     SRP270027     Raw sequence reads of methylation of larva Apis mellifera [Larva]
     SRP053236     Parallel Epigenomic and Transcriptomic Responses to Viral Infection in Honey Bees (Apis mellifera) [Eviscerated Abdomen With Attached Fat Bodies]
     SRP255221     Effects of commercial queen rearing methods on queen fecundity and genome methylation [Brain Ovary And Thorax Of Each Newly Emerged Queen]
     SRP250391     Honey bee whole-genome bisulfite sequencing [Fat Body]
     SRP242160     Genome-wide DNA methylation reveals epigenetic inheritance in honeybee (Apis mellifera) [Brain And Thorax, Brain Ovary And Thorax]
     SRP239353     DNA methylation data of E, L1,L2 in generationd (G1-G4) [Brain Ovary And Thorax Of Each Newly Emerged Queen]
     SRP235124     Evolution of CpH methylation in vertebrate brains [Brain, Cortex, Forebrain]
     SRP201695     The dynamic DNA methylation cycle from egg to sperm in the honey bee Apis mellifera [Egg, Semen, Thorax]
     SRP159479     Semen DNA methylation in male honey bees [Semen]
     SRP152109     DNA methylation is maintained with high fidelity in the honey bee germline and exhibits global non-functional fluctuations during somatic development [Embryo, Head, Larva, Pupa, Sperm]
     SRP130760     IAPV RNA-seq and BS-seq [DNA of the whole pupae]
     SRP024289     Apis mellifera KD dnmt3 [Fat Body]
     SRP011484     Reversible switching between epigenetic states in honeybee behavioral subcastes
     SRP064299     The evolution of DNA methylation inheritance and programming in animals [Blastula, Cleavage, Drone Blastoderm, Drone Gastrula, Oocyte, Sperm, Worker Blastoderm, Worker Gastrula]
     SRP068248     queen larvae raw sequence reads [Larvae Body]
     SRP311691     Screening bioactive food compounds in honey bees suggests curcumin blocks alcohol-induced damage to longevity and DNA methylation [Abdominal]
     SRP310910     DNA methylation in the brain and ovary of Apis mellifera [Brain, Ovary]
     SRP002417     Genome-wide evolutionary analysis of eukaryotic DNA methylation [Embryo, Muscle, Whole Adult Workers, Whole Adults]
     SRP002296     Apis mellifera Epigenomics [Brain]
     DRP001296     Bisulfite sequence of queen and worker honeybee larvae
     Common     Common methbase tracks for the apiMel2 assembly
-   Mapping and Sequencing    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
Scaffolds Assembly Scaffolds
Assembly Assembly from Fragments
Gap Gap Locations
GC Percent GC Percent in 5-Base Windows
Restr Enzymes Restriction Enzymes from REBASE
Short Match Perfect Matches to Short Sequence ()
-   Genes and Gene Predictions    
NCBI Genes NCBI Gene Models
Homologs (EMBL) Homology-based gene predictions (EMBL)
AUGUSTUS AUGUSTUS ab initio gene predictions v3.1
D. mel. Proteins D. melanogaster (Apr. 2004 (BDGP R4/dm2)) Proteins
Ensembl Genes Ensembl Genes
Geneid Genes Geneid Gene Predictions
Genscan Genes Genscan Gene Predictions
Other RefSeq Non-A. mellifera RefSeq Genes
UniProt UniProt SwissProt/TrEMBL Protein Annotations
Human Proteins Human(hg17) proteins mapped by chained tBLASTn
-   mRNA and EST    
Spliced ESTs A. mellifera ESTs That Have Been Spliced
A. mel. ESTs A. mellifera ESTs Including Unspliced
A. mel. mRNAs A. mellifera mRNAs from GenBank
Other mRNAs Non-A. mellifera mRNAs from GenBank
-   Expression and Regulation    
CpG Islands CpG Islands (Islands < 300 Bases are Light Green)
     CpG Islands     CpG Islands (Islands < 300 Bases are Light Green)
     Unmasked CpG     CpG Islands on All Sequence (Islands < 300 Bases are Light Green)
-   Comparative Genomics    
D. mel. Chain D. melanogaster (Apr. 2004 (BDGP R4/dm2)) Chained Alignments
D. mel. Net D. melanogaster (Apr. 2004 (BDGP R4/dm2)) Alignment Net
-   Variation and Repeats    
Microsatellite Microsatellites - Di-nucleotide and Tri-nucleotide Repeats
Simple Repeats Simple Tandem Repeats by TRF
RepeatMasker Repeating Elements by RepeatMasker