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Base Position |
| Chromosome position in bases. (Clicks here zoom in 3x) |
Scaffolds |
| Assembly Scaffolds |
Assembly |
| Assembly from Fragments |
Gap |
| Gap Locations |
GC Percent |
| GC Percent in 5-Base Windows |
INSDC |
| Accession at INSDC - International Nucleotide Sequence Database Collaboration |
Quality Scores |
| Rabbit Sequencing Quality Scores |
Restr Enzymes |
| Restriction Enzymes from REBASE |
Short Match |
| Perfect Matches to Short Sequence () |
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NCBI RefSeq |
| RefSeq genes from NCBI |
AUGUSTUS |
| AUGUSTUS ab initio gene predictions v3.1 |
Ensembl Genes |
| Ensembl Genes |
Geneid Genes |
| Geneid Gene Predictions |
Genscan Genes |
| Genscan Gene Predictions |
Human Proteins |
| Human Proteins Mapped by Chained tBLASTn |
Other RefSeq |
| Non-Rabbit RefSeq Genes |
TOGA vs. hg38 |
| TOGA annotations using human/hg38 as reference |
TransMap V5 |
| TransMap Alignments Version 5 |
TransMap Ensembl |
| TransMap Ensembl and GENCODE Mappings Version 5 |
TransMap RefGene |
| TransMap RefSeq Gene Mappings Version 5 |
TransMap RNA |
| TransMap GenBank RNA Mappings Version 5 |
TransMap ESTs |
| TransMap EST Mappings Version 5 |
tRNA Genes |
| Transfer RNA Genes Identified with tRNAscan-SE |
UniProt |
| UniProt SwissProt/TrEMBL Protein Annotations |
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Other mRNAs |
| Non-Rabbit mRNAs from GenBank |
Rabbit ESTs |
| Rabbit ESTs Including Unspliced |
Rabbit mRNAs |
| Rabbit mRNAs from GenBank |
Spliced ESTs |
| Rabbit ESTs That Have Been Spliced |
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CpG Islands |
| CpG Islands (Islands < 300 Bases are Light Green) |
CpG Islands |
| CpG Islands (Islands < 300 Bases are Light Green) |
Unmasked CpG |
| CpG Islands on All Sequence (Islands < 300 Bases are Light Green) |
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Opossum Chain/Net |
| Opossum (Oct. 2006 (Broad/monDom5)), Chain and Net Alignments |
Rat Chain/Net |
| Rat (Jul. 2014 (RGSC 6.0/rn6)), Chain and Net Alignments |
Guinea pig Chain/Net |
| Guinea pig (Feb. 2008 (Broad/cavPor3)), Chain and Net Alignments |
mm10 ChainNet |
| Mouse (Dec. 2011 (GRCm38/mm10)), Chain and Net Alignments |
Mouse Chain/Net |
| Mouse (Jun. 2020 (GRCm39/mm39)), Chain and Net Alignments |
hg19 ChainNet |
| Human (Feb. 2009 (GRCh37/hg19)), Chain and Net Alignments |
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RepeatMasker |
| Repeating Elements by RepeatMasker |
Interrupted Rpts |
| Fragments of Interrupted Repeats Joined by RepeatMasker ID |
Microsatellite |
| Microsatellites - Di-nucleotide and Tri-nucleotide Repeats |
Simple Repeats |
| Simple Tandem Repeats by TRF |
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