Control track and group visibility more selectively below.
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Base Position |
| Chromosome position in bases. (Clicks here zoom in 3x) |
Assembly |
| Assembly from Fragments |
Gap |
| Gap Locations |
GC Percent |
| GC Percent in 5-Base Windows |
INSDC |
| Accession at INSDC - International Nucleotide Sequence Database Collaboration |
RefSeq Acc |
| RefSeq Accession |
Restr Enzymes |
| Restriction Enzymes from REBASE |
Short Match |
| Perfect Matches to Short Sequence () |
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NCBI RefSeq |
| RefSeq genes from NCBI |
AUGUSTUS |
| AUGUSTUS ab initio gene predictions v3.1 |
Genscan Genes |
| Genscan Gene Predictions |
Other RefSeq |
| Non-Malayan flying lemur RefSeq Genes |
TransMap V5 |
| TransMap Alignments Version 5 |
TransMap Ensembl |
| TransMap Ensembl and GENCODE Mappings Version 5 |
TransMap RefGene |
| TransMap RefSeq Gene Mappings Version 5 |
TransMap RNA |
| TransMap GenBank RNA Mappings Version 5 |
TransMap ESTs |
| TransMap EST Mappings Version 5 |
UniProt |
| UniProt SwissProt/TrEMBL Protein Annotations |
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CpG Islands |
| CpG Islands (Islands < 300 Bases are Light Green) |
CpG Islands |
| CpG Islands (Islands < 300 Bases are Light Green) |
Unmasked CpG |
| CpG Islands on All Sequence (Islands < 300 Bases are Light Green) |
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5-way Mammal |
| Multiz Alignment & Conservation (5 Species) |
Tree shrew Chain/Net |
| Tree shrew (Dec. 2006 (Broad/tupBel1)), Chain and Net Alignments |
Human Chain/Net |
| Human (Dec. 2013 (GRCh38/hg38)), Chain and Net Alignments |
Guinea pig Chain/Net |
| Guinea pig (Feb. 2008 (Broad/cavPor3)), Chain and Net Alignments |
mm10 ChainNet |
| Mouse (Dec. 2011 (GRCm38/mm10)), Chain and Net Alignments |
Mouse Chain/Net |
| Mouse (Jun. 2020 (GRCm39/mm39)), Chain and Net Alignments |
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RepeatMasker |
| Repeating Elements by RepeatMasker |
Interrupted Rpts |
| Fragments of Interrupted Repeats Joined by RepeatMasker ID |
Microsatellite |
| Microsatellites - Di-nucleotide and Tri-nucleotide Repeats |
Simple Repeats |
| Simple Tandem Repeats by TRF |
WM + SDust |
| Genomic Intervals Masked by WindowMasker + SDust |
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