Configure Image
 
image width:pixels
label area width:characters
text size:
font:
style:
Display chromosome ideogram above main graphic
Show light blue vertical guidelines, or light red vertical window separators in multi-region view
Display labels to the left of items in tracks
Display description above each track
Show track controls under main graphic
Next/previous item navigation
Next/previous exon navigation
Show exon numbers
Enable highlight with drag-and-select (if unchecked, drag-and-select always zooms to selection)

Configure Tracks on UCSC Genome Browser: Dog Mar. 2020 (UU_Cfam_GSD_1.0/canFam4)
  Tracks:    Groups:
Control track and group visibility more selectively below.
-   Mapping and Sequencing    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
Assembly Assembly from Fragments
Gap Gap Locations
GC Percent GC Percent in 5-Base Windows
INSDC Accession at INSDC - International Nucleotide Sequence Database Collaboration
Restr Enzymes Restriction Enzymes from REBASE
Short Match Perfect Matches to Short Sequence ()
-   Genes and Gene Predictions    
NCBI RefSeq RefSeq genes from NCBI
AUGUSTUS AUGUSTUS ab initio gene predictions v3.1
Genscan Genes Genscan Gene Predictions
Other RefSeq Non-Dog RefSeq Genes
TOGA vs. hg38 TOGA annotations using human/hg38 as reference
UU GSD1.0 genes Uppsala University GSD1.0 gene annotations
-   mRNA and EST    
Dog ESTs Dog ESTs Including Unspliced
Dog mRNAs Dog mRNAs from GenBank
miRNA miRNA GSD1.0 miRDeep2
Other mRNAs Non-Dog mRNAs from GenBank
Spliced ESTs Dog ESTs That Have Been Spliced
-   Expression and Regulation    
CpG Islands CpG Islands (Islands < 300 Bases are Light Green)
     CpG Islands     CpG Islands (Islands < 300 Bases are Light Green)
     Unmasked CpG     CpG Islands on All Sequence (Islands < 300 Bases are Light Green)
-   Comparative Genomics    
Dog Chain/Net Dog (Sep. 2011 (Broad CanFam3.1/canFam3)), Chain and Net Alignments
Mouse Chain/Net Mouse (Dec. 2011 (GRCm38/mm10)), Chain and Net Alignments
Hawaiian monk seal Chain/Net Hawaiian monk seal (Jun. 2017 (ASM220157v1/neoSch1)), Chain and Net Alignments
Human Chain/Net Human (Dec. 2013 (GRCh38/hg38)), Chain and Net Alignments
-   Variation and Repeats    
RepeatMasker Repeating Elements by RepeatMasker
SNP and indels SNP and indels
Interrupted Rpts Fragments of Interrupted Repeats Joined by RepeatMasker ID
Microsatellite Microsatellites - Di-nucleotide and Tri-nucleotide Repeats
Simple Repeats Simple Tandem Repeats by TRF
Struct Var Structural variations
WM + SDust Genomic Intervals Masked by WindowMasker + SDust