GIS DNA PET Track Settings
 
ENCODE Genome Institute of Singapore DNA Paired-End Ditags

Display mode:       Reset to defaults   

Display read names
Attempt to join paired end reads by name
Minimum alignment quality:

Color track by bases: Help on base coloring

Alignment Gap/Insertion Display Options Help on display options
Draw double horizontal lines when both genome and query have an insertion
Draw a vertical purple line for an insertion at the beginning or end of the
query, orange for insertion in the middle of the query
Draw a vertical green line where query has a polyA tail insertion

Additional coloring modes:
Color by strand (blue for +, red for -)
Use gray for
No additional coloring

Display data as a density graph:

BAM configuration help

Select subtracks by cell line and frag size: (help)
 All Cell Line GM12878 (Tier 1)  K562 (Tier 1) 
Frag Size
1k 
5k 
10k 
20k 
List subtracks: only selected/visible    all    ()
  Cell Line↓1 Frag Size↓2   Track Name↓3  
 
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 Configure 		 GM12878  1k  ENCODE GIS DNA PET Alignments (1k frags in GM12878 cells)   Schema 
 
hide
 Configure 		 GM12878  5k  ENCODE GIS DNA PET Alignments (5k frags in GM12878 cells)   Schema 
 
hide
 Configure 		 GM12878  10k  ENCODE GIS DNA PET Alignments (10k frags in GM12878 cells)   Schema 
 
hide
 Configure 		 K562  1k  ENCODE GIS DNA PET Alignments (1k frags in K562 cells)   Schema 
 
hide
 Configure 		 K562  10k  ENCODE GIS DNA PET Alignments (10k frags in K562 cells)   Schema 
 
hide
 Configure 		 K562  20k  ENCODE GIS DNA PET Alignments (20k frags in K562 cells)   Schema