GIS DNA PET Track Settings
 
ENCODE Genome Institute of Singapore DNA Paired-End Ditags

Display mode:       Reset to defaults   

Display read names
Attempt to join paired end reads by name
Minimum alignment quality:

Color track by bases: Help on base coloring

Alignment Gap/Insertion Display Options Help on display options
Draw double horizontal lines when both genome and query have an insertion
Draw a vertical purple line for an insertion at the beginning or end of the
query, orange for insertion in the middle of the query
Draw a vertical green line where query has a polyA tail insertion

Additional coloring modes:
Color by strand (blue for +, red for -)
Use gray for
No additional coloring

Display data as a density graph:

BAM configuration help

Select subtracks by cell line and frag size: (help)
 All Cell Line GM12878 (Tier 1)  K562 (Tier 1) 
Frag Size
1k 
5k 
10k 
20k 
List subtracks: only selected/visible    all    ()
  Cell Line↓1 Frag Size↓2   Track Name↓3  
 
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 GM12878  1k  ENCODE GIS DNA PET Alignments (1k frags in GM12878 cells)   Schema 
 
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 GM12878  5k  ENCODE GIS DNA PET Alignments (5k frags in GM12878 cells)   Schema 
 
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 GM12878  10k  ENCODE GIS DNA PET Alignments (10k frags in GM12878 cells)   Schema 
 
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 K562  1k  ENCODE GIS DNA PET Alignments (1k frags in K562 cells)   Schema 
 
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 K562  10k  ENCODE GIS DNA PET Alignments (10k frags in K562 cells)   Schema 
 
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 K562  20k  ENCODE GIS DNA PET Alignments (20k frags in K562 cells)   Schema