Description
This track displays simple tandem repeats (possibly imperfect repeats) on
the 26 Aug 2022 Spodoptera frugiperda/GCF_023101765.2_AGI-APGP_CSIRO_Sfru_2.0/GCF_023101765.2 genome assembly,
located by Tandem Repeats
Finder (TRF) which is specialized for this purpose. These repeats can
occur within coding regions of genes and may be quite
polymorphic. Repeat expansions are sometimes associated with specific
diseases.
There are 54,990 items in the track covering 6,629,450 bases,
assembly size 383,923,118 bases, percent coverage % 1.73.
Methods
For more information about the TRF program, see Benson (1999).
Credits
TRF was written by
Gary Benson.
References
Benson G.
Tandem repeats finder: a program to analyze DNA sequences.
Nucleic Acids Res. 1999 Jan 15;27(2):573-80.
PMID: 9862982; PMC: PMC148217
Credits
This track was generated using a modification of a program developed by G. Miklem and L. Hillier
(unpublished).
References
Gardiner-Garden M, Frommer M.
CpG islands in vertebrate genomes.
J Mol Biol. 1987 Jul 20;196(2):261-82.
PMID: 3656447
|
|