Chicken methylome studies Common Track Settings

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Common methbase tracks for the galGal6 assembly

Track collection: Chicken methylome studies

All tracks in this collection (25)

Common	Common methbase tracks for the galGal6 assembly
ERP126680	GENE-SWITCH Chicken DNA methylation with Whole Genome bisulfite sequencing (WGBS) [AIL Embryo E8 pool3 hindlimb muscle, AIL Embryo E8 pool3 skin, AIL Embryo E8 pool3 small intestine, AIL Embryo E8 pool4 hindbrain, AIL Embryo E8 pool4 kidney, AIL Embryo E8 pool4 liver, AIL Embryo E8 pool4 lung, Cerebellum, Hindlimb Muscle, Kidney, Liver, Lung, Skin Of Back, Small Intestine]
ERP144515	FAANG Chicken SL-29 cell line
SRP028242	Gallus gallus Epigenomics
SRP033603	Gallus gallus transcriptome [Embryo]
SRP041054	Evolutionary consequences of DNA methylation on the GC content in vertebrate genomes [Sperm]
SRP041344	Single-base resolution DNA methylation profiles of two highly inbred chicken lines, Leghorn and Fayoumi, by whole-genome bisulfite sequencing (MethylC-seq). [Lung]
SRP092806	Gallus gallus Epigenomics [Breast Muscle]
SRP108572	Whole genome DNA methylation sequencing of the chicken retina, cornea and brain [Brain, Cornea, Retina]
SRP188450	A homeostasis hypothesis of avian influenza resistance in chickens [Lung]
SRP233032	Whole-genome bisulfite sequencing of hypothalamus and ovary in Langshan chicken [Hypothalamus, Ovary]
SRP235124	Evolution of CpH methylation in vertebrate brains [Brain, Cortex, Forebrain]
SRP252164	The dynamic methylome of the broiler chicken as a resource for livestock performance biomarker development [Breast, Ileum, Jejunum, Spleen]
SRP295626	WGBS of liver for chicken with fatty liver [Liver]
SRP304425	Whole-genome bisulfite sequencing of Chinese indigenous chicken resources [Blood]
SRP304961	Gallus gallus Raw sequence reads [Leg Muscle]
SRP309852	Gallus gallus strain:chicken Raw sequence reads [Mandibular Condyle]
SRP321573	Conservation and divergence of DNA methylation patterns and functions in vertebrates [Primary Dermal Fibroblasts, Psoas Muscle]
SRP359458	Changes in DNA Methylation Hallmark Alterations In Chromatin Accessibility And Gene Expression For Eye Lens Differentiation [Bisulfite-seq] [Lens Epithelial, Lens Fiber]
SRP387729	Genome-wide DNA methylation landscape of spleens from chickens with different resistance to infection with Marek's disease [Spleen]
SRP426826	Sequencing of DNA methylation in chicken adipose tissue [Adipose Tissue]
SRP430459	WGBS of chicken embryonic gonads between sexes [Gonad]
SRP464968	WGBS for chicken myoblast DM_vs_GM [Leg Muscle]
SRP466458	Gallus gallus strain:blue eggshell strain \| breed:Xuefeng Black-bone chicken Raw sequence reads [Shell Gland]
SRP504622	Influence of DNA-methylation at multiple stages of limb chondrogenesis [Hindlimb 28HH third interdigit]

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	full Configure	CpGs	Positions of CpG sites in galGal6	Schema

Description

The common tracks include tracks that are part of methbase but that relate to an assembly rather than to a specific methylome.

The common tracks include:

CpGs The positions of CpG sites in galGal6.

Credits

Andrew D. Smith