Rat methylome studies Common Track Settings

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Common methbase tracks for the rn7 assembly

Track collection: Rat methylome studies

All tracks in this collection (25)

Common	Common methbase tracks for the rn7 assembly
DRP004151	Whole genome bisulfite sequencing of rat germ cells [Oocyte, Sperm]
ERP002215	Genetic analysis of the cardiac methylome at single nucleotide resolution in the Spontaneously Hypertensive Rat and the Brown Norway Rat [Heart]
ERP139499	Whole genome bisulfite sequencing of liver samples of five mammals (human, rhesus macaque, mouse, rat and dog) [Liver]
SRP055171	Sex differences in methylation in the developing pre optic area [Brain-preoptic area]
SRP061547	Rattus norvegicus Raw sequence reads [NA]
SRP062855	Rattus norvegicus genome resequencing [Sperm]
SRP072273	Whole genome DNA methylation profile of sperm cells in mammalian species [Sperm]
SRP079366	Bayesian bisulphite sequencing analysis reveals changes in macrophage DNA methylation in glomerulonephritis [Primary Macrophages]
SRP093620	Whole Genome Bisulfite sequencing for liver DNA methylation analysis of rat exposed to 0.05% Pb [Liver]
SRP103785	DNA Methylation of Synaptic Genes in the Prefrontal Cortex is Associated with Aging and Age-Related Cognitive Impairment [Medial Prefrontal Cortex]
SRP105091	Iron-Deficiency in Pregnancy: Effects on the Rat Hippocampus [Hippocampus]
SRP107963	Integrative epigenomic analyses of early-life hypothalamic response to augmented maternal care [BiSulfite-seq] [Hypothalamus]
SRP221276	Imprinting effects of UBE3A loss on synaptic gene networks and Wnt signaling pathways [Hypothalamus]
SRP299084	Analysis of ctDNA methylation induced by ionizing to different ograns [Brain, Lung, Serum, Skin]
SRP306996	Examination of CA1 hippocampal DNA methylation as a mechanism for closing of estrogen's critical window [Brain Hippocampal]
SRP331912	Methyl-seq Rat [Sperm]
SRP337929	Epigenomic profiling of liver reveals the key regulators of heat stress in rats [Liver]
SRP342917	Rat and mouse imprintomes (allele-specific DNA methylomes) [EPC, Epiblast]
SRP375219	DNA methylation dynamics during esophageal epithelial regeneration following repair with acellular silk fibroin grafts in rat [Esophageal]
SRP392105	Placental ischemia disrupts DNA methylation patterns of distal regulatory regions in rat [Placenta, Planceta]
SRP424555	Rattus norvegicus Genome sequencing [Rat]
SRP483279	Rattus norvegicus Epigenomics [Embryo]
SRP505029	Epigenetic upregulation of carotid body angiotensin signaling increase blood pressure. [Carotid Body]
SRP536955	Estrogen receptor signaling alters sperm DNA methylation landscape in adult male rats [Caudal Sperm]

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	full Configure	CpGs	Positions of CpG sites in rn7	Schema

Description

The common tracks include tracks that are part of methbase but that relate to an assembly rather than to a specific methylome.

The common tracks include:

CpGs The positions of CpG sites in rn7.

Credits

Andrew D. Smith