Human methylome studies SRP230793 Track Settings
Study title: Cord blood DNA methylome in newborns later diagnosed with autism spectrum disorder reflects early dysregulation of neurodevelopmental and X-linked genes
SRA: SRP230793
GEO: GSE140730
Pubmed: 33054850
Experiment
Label
Methylation
Coverage
HMRs
HMR size
AMRs
AMR size
PMDs
PMD size
Conversion
Details
SRX7191590
Cord Blood
0.776
8.9
45886
1057.6
691
897.8
1343
22086.5
0.981
title: GSM4182609 Discovery_TD_M_01, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "EARLI"}
SRX7191591
Cord Blood
0.776
9.8
46218
1051.4
739
859.8
1309
23040.4
0.980
title: GSM4182610 Discovery_TD_M_02, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "EARLI"}
SRX7191592
Cord Blood
0.769
10.5
47818
1026.4
668
917.5
1360
20703.4
0.981
title: GSM4182611 Discovery_TD_M_03, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "EARLI"}
SRX7191593
Cord Blood
0.763
10.2
48148
1045.3
628
903.9
1285
23831.5
0.980
title: GSM4182612 Discovery_TD_M_04, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "EARLI"}
SRX7191594
Cord Blood
0.759
9.8
47676
1044.5
668
895.0
1523
21221.3
0.982
title: GSM4182613 Discovery_TD_M_05, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "EARLI"}
SRX7191595
Cord Blood
0.771
9.3
47195
1050.5
599
889.6
1357
19818.8
0.980
title: GSM4182614 Discovery_TD_M_06, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "EARLI"}
SRX7191596
Cord Blood
0.780
8.3
49247
1054.5
432
910.4
1389
21106.3
0.980
title: GSM4182615 Discovery_TD_M_07, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "EARLI"}
SRX7191597
Cord Blood
0.780
9.6
46851
1043.1
721
889.1
1298
20892.2
0.979
title: GSM4182616 Discovery_TD_M_08, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "EARLI"}
SRX7191598
Cord Blood
0.776
8.5
47006
1062.1
518
917.0
1469
21513.2
0.981
title: GSM4182617 Discovery_TD_M_09, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "EARLI"}
SRX7191599
Cord Blood
0.775
9.7
48786
1033.1
695
887.5
1522
22029.2
0.981
title: GSM4182618 Discovery_TD_M_10, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "EARLI"}
SRX7191600
Cord Blood
0.770
9.7
46554
1047.4
698
888.9
1396
20907.6
0.980
title: GSM4182619 Discovery_TD_M_11, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "EARLI"}
SRX7191601
Cord Blood
0.765
8.7
45637
1070.0
553
911.6
1339
19804.7
0.981
title: GSM4182620 Discovery_TD_M_12, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "EARLI"}
SRX7191602
Cord Blood
0.772
8.4
46853
1064.4
557
884.5
1126
27884.5
0.981
title: GSM4182621 Discovery_TD_M_13, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "EARLI"}
SRX7191603
Cord Blood
0.767
9.0
52430
1014.9
471
965.0
1206
31500.2
0.980
title: GSM4182622 Discovery_TD_M_14, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "EARLI"}
SRX7191604
Cord Blood
0.774
9.3
47705
1050.7
599
913.3
1487
20100.0
0.979
title: GSM4182623 Discovery_TD_M_15, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "EARLI"}
SRX7191605
Cord Blood
0.766
9.6
47482
1050.9
719
856.6
1477
22808.6
0.980
title: GSM4182624 Discovery_TD_M_16, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "EARLI"}
SRX7191606
Cord Blood
0.774
9.7
47282
1043.5
759
901.3
1449
22183.2
0.979
title: GSM4182625 Discovery_TD_M_17, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "EARLI"}
SRX7191607
Cord Blood
0.775
8.7
46747
1058.6
639
895.0
1558
22868.5
0.982
title: GSM4182626 Discovery_TD_M_18, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "EARLI"}
SRX7191608
Cord Blood
0.770
9.1
45274
1066.2
619
876.6
1402
21013.3
0.981
title: GSM4182627 Discovery_TD_M_19, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "EARLI"}
SRX7191609
Cord Blood
0.772
9.7
47318
1039.9
797
892.8
1403
23507.1
0.980
title: GSM4182628 Discovery_TD_M_20, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "EARLI"}
SRX7191610
Cord Blood
0.762
9.5
48098
1046.2
482
913.4
1222
22371.9
0.979
title: GSM4182629 Discovery_TD_M_21, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "EARLI"}
SRX7191611
Cord Blood
0.769
7.8
44861
1090.2
515
913.1
1016
26855.8
0.978
title: GSM4182630 Discovery_TD_M_22, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "EARLI"}
SRX7191612
Cord Blood
0.776
9.6
47732
1033.0
684
900.1
1459
20038.6
0.981
title: GSM4182631 Discovery_TD_M_23, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "EARLI"}
SRX7191613
Cord Blood
0.770
8.6
48868
1048.4
447
935.6
1374
22575.2
0.982
title: GSM4182632 Discovery_TD_M_24, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "EARLI"}
SRX7191614
Cord Blood
0.764
8.2
45078
1076.8
569
906.6
1031
27297.3
0.979
title: GSM4182633 Discovery_TD_M_25, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "EARLI"}
SRX7191615
Cord Blood
0.770
7.4
47734
1076.6
407
919.5
993
31144.8
0.983
title: GSM4182634 Discovery_TD_M_26, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "MARBLES"}
SRX7191616
Cord Blood
0.771
7.2
43876
1103.6
516
935.4
1210
27770.4
0.983
title: GSM4182635 Discovery_TD_M_27, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "MARBLES"}
SRX7191617
Cord Blood
0.769
4.7
40372
1216.0
219
937.5
754
36883.4
0.981
title: GSM4182636 Discovery_TD_M_28, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "MARBLES"}
SRX7191618
Cord Blood
0.775
5.8
41431
1180.1
304
931.9
959
36952.0
0.972
title: GSM4182637 Discovery_TD_M_29, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "MARBLES"}
SRX7191619
Cord Blood
0.770
5.2
40375
1197.6
215
1033.2
836
34867.8
0.969
title: GSM4182638 Discovery_TD_M_30, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "MARBLES"}
SRX7191620
Cord Blood
0.760
4.6
39153
1234.5
239
961.1
764
36765.6
0.963
title: GSM4182639 Discovery_TD_M_31, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "MARBLES"}
SRX7191621
Cord Blood
0.741
3.5
34905
1307.5
171
1048.6
367
36090.3
0.953
title: GSM4182640 Discovery_TD_M_32, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "MARBLES"}
SRX7191622
Cord Blood
0.773
7.6
45153
1079.0
493
907.8
1054
30635.4
0.986
title: GSM4182641 Discovery_TD_M_33, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "MARBLES"}
SRX7191623
Cord Blood
0.759
6.9
40564
1136.4
351
969.8
1059
22727.7
0.985
title: GSM4182642 Discovery_TD_M_34, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "MARBLES"}
SRX7191624
Cord Blood
0.764
5.3
37811
1227.8
242
955.4
865
26889.2
0.982
title: GSM4182643 Discovery_TD_M_35, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "MARBLES"}
SRX7191625
Cord Blood
0.772
10.5
47359
1037.1
1158
963.9
1440
23004.1
0.980
title: GSM4182644 Discovery_TD_F_01, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "female", "study": "EARLI"}
SRX7191626
Cord Blood
0.767
9.6
45594
1045.2
1037
980.1
1326
21149.3
0.979
title: GSM4182645 Discovery_TD_F_02, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "female", "study": "EARLI"}
SRX7191627
Cord Blood
0.772
9.7
47173
1039.3
1095
997.0
1576
20489.7
0.980
title: GSM4182646 Discovery_TD_F_03, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "female", "study": "EARLI"}
SRX7191628
Cord Blood
0.761
10.1
44596
1039.1
989
1020.5
1118
21507.2
0.980
title: GSM4182647 Discovery_TD_F_04, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "female", "study": "EARLI"}
SRX7191629
Cord Blood
0.732
9.0
43555
1077.9
793
988.1
918
25924.9
0.979
title: GSM4182648 Discovery_TD_F_05, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "female", "study": "EARLI"}
SRX7191630
Cord Blood
0.778
9.8
46780
1031.5
1159
973.8
1474
21347.5
0.979
title: GSM4182649 Discovery_TD_F_06, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "female", "study": "EARLI"}
SRX7191631
Cord Blood
0.777
8.5
46878
1039.0
981
992.6
1202
20737.0
0.983
title: GSM4182650 Discovery_TD_F_07, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "female", "study": "MARBLES"}
SRX7191632
Cord Blood
0.772
8.5
44862
1070.7
915
964.6
1085
30708.7
0.982
title: GSM4182651 Discovery_TD_F_08, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "female", "study": "MARBLES"}
SRX7191633
Cord Blood
0.767
8.3
47444
1052.5
878
960.2
1386
21295.8
0.981
title: GSM4182652 Discovery_TD_F_09, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "female", "study": "MARBLES"}
SRX7191634
Cord Blood
0.767
6.3
41019
1159.6
486
984.1
989
33898.1
0.979
title: GSM4182653 Discovery_TD_F_10, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "female", "study": "MARBLES"}
SRX7191635
Cord Blood
0.764
4.2
38002
1244.4
280
1060.9
582
35287.8
0.958
title: GSM4182654 Discovery_TD_F_11, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "female", "study": "MARBLES"}
SRX7191636
Cord Blood
0.769
6.6
41590
1121.8
595
1029.3
1056
26063.4
0.985
title: GSM4182655 Discovery_TD_F_12, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "female", "study": "MARBLES"}
SRX7191637
Cord Blood
0.763
6.9
43276
1101.6
702
1006.3
849
27742.6
0.986
title: GSM4182656 Discovery_TD_F_13, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "female", "study": "MARBLES"}
SRX7191638
Cord Blood
0.760
5.7
46580
1153.7
461
1091.4
802
29657.0
0.983
title: GSM4182657 Discovery_TD_F_14, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "female", "study": "MARBLES"}
SRX7191639
Cord Blood
0.757
3.3
35192
1289.5
215
947.2
532
48087.0
0.968
title: GSM4182658 Discovery_TD_F_15, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "female", "study": "MARBLES"}
SRX7191640
Cord Blood
0.764
9.0
46002
1061.6
665
914.9
1434
20441.6
0.980
title: GSM4182659 Discovery_ASD_M_01, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "EARLI"}
SRX7191641
Cord Blood
0.741
8.0
42699
1110.3
465
930.6
968
22327.6
0.980
title: GSM4182660 Discovery_ASD_M_02, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "EARLI"}
SRX7191642
Cord Blood
0.765
9.6
45838
1041.9
599
915.9
1406
18773.2
0.980
title: GSM4182661 Discovery_ASD_M_03, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "EARLI"}
SRX7191643
Cord Blood
0.767
9.5
44332
1073.6
643
916.8
1337
25236.9
0.980
title: GSM4182662 Discovery_ASD_M_04, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "EARLI"}
SRX7191644
Cord Blood
0.756
10.4
47566
1033.5
653
909.0
1399
19047.1
0.980
title: GSM4182663 Discovery_ASD_M_05, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "EARLI"}
SRX7191645
Cord Blood
0.768
10.2
48596
1031.9
716
891.7
1549
21640.5
0.980
title: GSM4182664 Discovery_ASD_M_06, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "EARLI"}
SRX7191646
Cord Blood
0.774
10.4
52409
1000.0
562
928.4
1381
26808.0
0.979
title: GSM4182665 Discovery_ASD_M_07, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "EARLI"}
SRX7191647
Cord Blood
0.766
8.9
48628
1043.4
513
893.0
986
32754.2
0.979
title: GSM4182666 Discovery_ASD_M_08, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "EARLI"}
SRX7191648
Cord Blood
0.776
9.2
46016
1061.1
674
900.1
1455
19786.4
0.980
title: GSM4182667 Discovery_ASD_M_09, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "EARLI"}
SRX7191649
Cord Blood
0.760
8.5
46298
1074.3
543
903.1
1252
21997.7
0.978
title: GSM4182668 Discovery_ASD_M_10, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "EARLI"}
SRX7191650
Cord Blood
0.763
10.0
47665
1037.3
674
884.4
1185
19693.8
0.979
title: GSM4182669 Discovery_ASD_M_11, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "EARLI"}
SRX7191651
Cord Blood
0.768
9.1
50186
1033.9
514
932.0
1452
20532.1
0.980
title: GSM4182670 Discovery_ASD_M_12, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "EARLI"}
SRX7191652
Cord Blood
0.737
10.1
42858
1076.3
509
934.9
1100
17342.8
0.981
title: GSM4182671 Discovery_ASD_M_13, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "EARLI"}
SRX7191653
Cord Blood
0.770
11.0
50278
1014.4
687
879.9
1335
22896.2
0.982
title: GSM4182672 Discovery_ASD_M_14, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "EARLI"}
SRX7191654
Cord Blood
0.773
8.5
47690
1052.6
541
895.9
1270
21953.1
0.976
title: GSM4182673 Discovery_ASD_M_15, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "EARLI"}
SRX7191655
Cord Blood
0.753
8.6
42193
1106.0
496
886.7
1245
19451.0
0.974
title: GSM4182674 Discovery_ASD_M_16, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "EARLI"}
SRX7191656
Cord Blood
0.764
9.1
46240
1067.1
645
872.8
1493
24790.0
0.979
title: GSM4182675 Discovery_ASD_M_17, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "EARLI"}
SRX7191657
Cord Blood
0.768
9.5
48560
1039.3
536
914.0
1342
24533.7
0.982
title: GSM4182676 Discovery_ASD_M_18, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "EARLI"}
SRX7191658
Cord Blood
0.761
9.4
44700
1060.5
560
893.1
1329
18674.7
0.981
title: GSM4182677 Discovery_ASD_M_19, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "EARLI"}
SRX7191659
Cord Blood
0.771
8.6
47231
1050.5
557
896.0
1511
20620.3
0.977
title: GSM4182678 Discovery_ASD_M_20, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "EARLI"}
SRX7191660
Cord Blood
0.766
8.5
47713
1061.7
427
949.6
1396
20059.8
0.977
title: GSM4182679 Discovery_ASD_M_21, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "EARLI"}
SRX7191661
Cord Blood
0.767
9.9
44811
1069.3
762
885.9
1389
22864.2
0.976
title: GSM4182680 Discovery_ASD_M_22, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "EARLI"}
SRX7191662
Cord Blood
0.773
9.7
49984
1020.8
562
884.0
1259
20757.8
0.982
title: GSM4182681 Discovery_ASD_M_23, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "EARLI"}
SRX7191663
Cord Blood
0.776
10.0
48855
1039.1
696
892.0
1347
24150.0
0.981
title: GSM4182682 Discovery_ASD_M_24, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "EARLI"}
SRX7191664
Cord Blood
0.768
8.5
50844
1029.8
411
924.8
1158
30767.3
0.983
title: GSM4182683 Discovery_ASD_M_25, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "MARBLES"}
SRX7191665
Cord Blood
0.764
8.2
46028
1079.5
477
896.3
1059
25490.0
0.984
title: GSM4182684 Discovery_ASD_M_26, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "MARBLES"}
SRX7191666
Cord Blood
0.760
6.9
42155
1128.6
379
939.5
978
25808.4
0.978
title: GSM4182685 Discovery_ASD_M_27, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "MARBLES"}
SRX7191667
Cord Blood
0.764
6.3
41756
1152.0
401
924.3
916
32957.0
0.971
title: GSM4182686 Discovery_ASD_M_28, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "MARBLES"}
SRX7191668
Cord Blood
0.774
5.9
41192
1164.0
352
931.3
1006
34055.4
0.985
title: GSM4182687 Discovery_ASD_M_29, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "MARBLES"}
SRX7191669
Cord Blood
0.773
9.6
48860
1028.5
637
924.8
1292
23183.9
0.986
title: GSM4182688 Discovery_ASD_M_30, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "MARBLES"}
SRX7191670
Cord Blood
0.771
6.5
42003
1122.1
425
916.0
954
25547.5
0.985
title: GSM4182689 Discovery_ASD_M_31, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "MARBLES"}
SRX7191671
Cord Blood
0.771
7.7
47645
1052.1
547
941.5
1095
25361.4
0.985
title: GSM4182690 Discovery_ASD_M_32, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "MARBLES"}
SRX7191672
Cord Blood
0.765
8.0
46251
1073.8
567
922.5
906
26359.6
0.982
title: GSM4182691 Discovery_ASD_M_33, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "MARBLES"}
SRX7191673
Cord Blood
0.766
8.9
46776
1055.2
901
992.7
1417
22170.7
0.980
title: GSM4182692 Discovery_ASD_F_01, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "female", "study": "EARLI"}
SRX7191674
Cord Blood
0.773
10.5
49016
1022.4
1088
971.8
1342
25411.4
0.980
title: GSM4182693 Discovery_ASD_F_02, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "female", "study": "EARLI"}
SRX7191675
Cord Blood
0.780
10.4
48025
1028.9
1097
969.9
1476
21042.5
0.980
title: GSM4182694 Discovery_ASD_F_03, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "female", "study": "EARLI"}
SRX7191676
Cord Blood
0.766
9.9
49944
1020.9
885
1020.1
1520
21743.6
0.978
title: GSM4182695 Discovery_ASD_F_04, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "female", "study": "EARLI"}
SRX7191677
Cord Blood
0.776
8.7
48609
1048.5
849
997.9
1478
26872.6
0.980
title: GSM4182696 Discovery_ASD_F_05, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "female", "study": "EARLI"}
SRX7191678
Cord Blood
0.740
10.3
46678
1033.4
964
982.8
1129
24208.1
0.980
title: GSM4182697 Discovery_ASD_F_06, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "female", "study": "EARLI"}
SRX7191679
Cord Blood
0.756
6.8
41483
1124.9
713
1028.1
915
23549.3
0.983
title: GSM4182698 Discovery_ASD_F_07, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "female", "study": "MARBLES"}
SRX7191680
Cord Blood
0.772
7.5
46742
1072.3
684
1030.8
1182
29478.8
0.982
title: GSM4182699 Discovery_ASD_F_08, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "female", "study": "MARBLES"}
SRX7191681
Cord Blood
0.768
8.5
46549
1053.8
821
958.6
1380
22726.0
0.982
title: GSM4182700 Discovery_ASD_F_09, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "female", "study": "MARBLES"}
SRX7191682
Cord Blood
0.768
5.1
40045
1189.9
416
1040.6
641
34811.6
0.965
title: GSM4182701 Discovery_ASD_F_10, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "female", "study": "MARBLES"}
SRX7191683
Cord Blood
0.766
4.4
37408
1221.5
362
1045.1
739
38846.6
0.953
title: GSM4182702 Discovery_ASD_F_11, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "female", "study": "MARBLES"}
SRX7191684
Cord Blood
0.740
4.6
38794
1219.5
392
1047.8
700
34001.9
0.973
title: GSM4182703 Discovery_ASD_F_12, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "female", "study": "MARBLES"}
SRX7191685
Cord Blood
0.771
7.4
46982
1064.8
684
1012.2
1077
26230.4
0.985
title: GSM4182704 Discovery_ASD_F_13, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "female", "study": "MARBLES"}
SRX7191686
Cord Blood
0.768
6.7
43452
1105.4
777
964.0
940
32368.5
0.985
title: GSM4182705 Discovery_ASD_F_14, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "female", "study": "MARBLES"}
SRX7191687
Cord Blood
0.771
8.3
44179
1080.6
730
999.8
1046
24986.8
0.984
title: GSM4182706 Discovery_ASD_F_15, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Discovery", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "female", "study": "MARBLES"}
SRX7191688
Cord Blood
0.761
3.5
37756
1243.4
96
1092.8
485
38596.7
0.981
title: GSM4182707 Replication_TD_M_01, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Replication", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "MARBLES"}
SRX7191689
Cord Blood
0.766
2.8
35113
1345.1
40
1121.9
481
50231.3
0.978
title: GSM4182708 Replication_TD_M_02, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Replication", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "MARBLES"}
SRX7191690
Cord Blood
0.781
3.5
36329
1254.0
75
1192.8
572
37528.8
0.988
title: GSM4182709 Replication_TD_M_03, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Replication", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "MARBLES"}
SRX7191691
Cord Blood
0.776
3.7
36437
1243.6
77
963.0
400
41011.9
0.986
title: GSM4182710 Replication_TD_M_04, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Replication", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "MARBLES"}
SRX7191692
Cord Blood
0.770
3.1
35632
1262.1
81
1096.5
451
40458.1
0.987
title: GSM4182711 Replication_TD_M_05, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Replication", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "MARBLES"}
SRX7191693
Cord Blood
0.769
6.4
43675
1094.5
212
997.0
1022
24996.4
0.978
title: GSM4182712 Replication_TD_M_06, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Replication", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "MARBLES"}
SRX7191694
Cord Blood
0.768
4.8
37949
1192.4
152
1031.9
818
33479.7
0.983
title: GSM4182713 Replication_TD_M_07, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Replication", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "MARBLES"}
SRX7191695
Cord Blood
0.761
6.2
41984
1133.4
194
1000.6
1069
21479.7
0.980
title: GSM4182714 Replication_TD_M_08, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Replication", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "MARBLES"}
SRX7191696
Cord Blood
0.766
4.8
39166
1187.0
132
978.4
885
26125.4
0.984
title: GSM4182715 Replication_TD_M_09, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Replication", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "MARBLES"}
SRX7191697
Cord Blood
0.759
4.0
36398
1253.7
128
1095.1
681
34178.8
0.983
title: GSM4182716 Replication_TD_M_10, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Replication", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "MARBLES"}
SRX7191698
Cord Blood
0.764
6.2
42896
1109.8
221
1018.7
874
26647.8
0.981
title: GSM4182717 Replication_TD_M_11, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Replication", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "male", "study": "MARBLES"}
SRX7191699
Cord Blood
0.768
6.3
45049
1076.3
368
1031.0
1110
27654.3
0.980
title: GSM4182718 Replication_TD_F_01, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Replication", "tissue": "umbilical cord blood", "diagnosis": "TD", "sex": "female", "study": "MARBLES"}
SRX7191700
Cord Blood
0.758
3.4
35149
1282.9
70
1050.8
544
35083.9
0.983
title: GSM4182719 Replication_ASD_M_01, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Replication", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "MARBLES"}
SRX7191701
Cord Blood
0.754
3.0
34514
1286.2
82
1053.6
329
41679.2
0.980
title: GSM4182720 Replication_ASD_M_02, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Replication", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "MARBLES"}
SRX7191702
Cord Blood
0.749
3.9
35891
1244.3
109
1059.7
440
31722.0
0.988
title: GSM4182721 Replication_ASD_M_03, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Replication", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "MARBLES"}
SRX7191703
Cord Blood
0.775
3.4
37132
1242.4
78
1060.3
484
45687.4
0.988
title: GSM4182722 Replication_ASD_M_04, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Replication", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "MARBLES"}
SRX7191704
Cord Blood
0.761
3.3
36007
1286.2
80
972.1
442
45880.6
0.988
title: GSM4182723 Replication_ASD_M_05, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Replication", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "MARBLES"}
SRX7191706
Cord Blood
0.771
5.7
41499
1147.3
166
1055.3
975
25275.7
0.980
title: GSM4182725 Replication_ASD_M_07, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Replication", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "MARBLES"}
SRX7191707
Cord Blood
0.762
5.0
39331
1184.4
165
1002.8
882
25099.4
0.978
title: GSM4182726 Replication_ASD_M_08, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Replication", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "MARBLES"}
SRX7191708
Cord Blood
0.766
4.7
38527
1194.1
151
1002.0
560
32073.9
0.982
title: GSM4182727 Replication_ASD_M_09, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Replication", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "MARBLES"}
SRX7191709
Cord Blood
0.768
5.3
39595
1171.5
157
1047.2
927
25817.7
0.981
title: GSM4182728 Replication_ASD_M_10, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Replication", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "MARBLES"}
SRX7191710
Cord Blood
0.749
6.3
39626
1159.1
214
998.2
865
24264.8
0.978
title: GSM4182729 Replication_ASD_M_11, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Replication", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "MARBLES"}
SRX7191711
Cord Blood
0.744
6.4
39889
1141.0
216
973.3
738
25726.3
0.980
title: GSM4182730 Replication_ASD_M_12, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Replication", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "MARBLES"}
SRX7191712
Cord Blood
0.757
5.7
41372
1144.3
209
952.3
855
24730.1
0.977
title: GSM4182731 Replication_ASD_M_13, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Replication", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "MARBLES"}
SRX7191713
Cord Blood
0.758
6.0
41460
1132.2
196
998.7
865
26605.1
0.976
title: GSM4182732 Replication_ASD_M_14, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Replication", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "MARBLES"}
SRX7191714
Cord Blood
0.758
7.4
46657
1049.1
246
992.1
1000
21952.6
0.981
title: GSM4182733 Replication_ASD_M_15, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Replication", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "male", "study": "MARBLES"}
SRX7191715
Cord Blood
0.742
2.8
31766
1348.9
116
1023.2
301
46784.9
0.966
title: GSM4182734 Replication_ASD_F_01, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Replication", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "female", "study": "MARBLES"}
SRX7191716
Cord Blood
0.780
3.2
36417
1241.4
142
1043.3
489
44280.1
0.987
title: GSM4182735 Replication_ASD_F_02, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Replication", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "female", "study": "MARBLES"}
SRX7191717
Cord Blood
0.753
3.9
36303
1236.8
205
1098.2
544
36396.3
0.984
title: GSM4182736 Replication_ASD_F_03, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Replication", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "female", "study": "MARBLES"}
SRX7191718
Cord Blood
0.754
6.2
40767
1133.8
410
1057.9
787
27005.0
0.978
title: GSM4182737 Replication_ASD_F_04, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Replication", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "female", "study": "MARBLES"}
SRX7191719
Cord Blood
0.768
4.5
39260
1186.4
195
1023.5
737
34534.2
0.983
title: GSM4182738 Replication_ASD_F_05, Homo sapiens, Bisulfite-Seq; {"source_name": "umbilical cord blood", "sample_set": "Replication", "tissue": "umbilical cord blood", "diagnosis": "ASD", "sex": "female", "study": "MARBLES"}
Methods
All analysis was done using a bisulfite sequnecing data analysis
pipeline DNMTools
developed in the Smith lab at USC.
Mapping reads from bisulfite sequencing :
Bisulfite treated reads are mapped to the genomes with the
abismal
program. Input reads are
filtered by their quality, and adapter sequences in the 3' end of
reads are trimmed. This is done with cutadapt. Uniquely mapped reads
with mismatches/indels below given threshold are retained. For
pair-end reads, if the two mates overlap, the overlapping part of the
mate with lower quality is discarded. After mapping, we use the format
command in dnmtools to merge mates for paired-end reads. We use the
dnmtools uniq command to randomly select one from multiple reads
mapped exactly to the same location. Without random oligos as UMIs,
this is our best indication of PCR duplicates.
Estimating methylation levels :
After reads are mapped and filtered, the
dnmtools counts
command is used to obtain read
coverage and estimate methylation levels at individual cytosine
sites. We count the number of methylated reads (those containing a
C) and the number of unmethylated reads (those containing a T) at
each nucleotide in a mapped read that corresponds to a cytosine in
the reference genome. The methylation level of that cytosine is
estimated as the ratio of methylated to total reads covering that
cytosine. For cytosines in the symmetric CpG sequence context,
reads from the both strands are collapsed to give a single
estimate. Very rarely do the levels differ between strands
(typically only if there has been a substitution, as in a somatic
mutation), and this approach gives a better estimate.
Bisulfite conversion rate :
The bisulfite conversion rate for an experiment is estimated with
the dnmtools bsrate
command, which computes the
fraction of successfully converted nucleotides in reads (those
read out as Ts) among all nucleotides in the reads mapped that map
over cytosines in the reference genome. This is done either using
a spike-in (e.g., lambda), the mitochondrial DNA, or the nuclear
genome. In the latter case, only non-CpG sites are used. While
this latter approach can be impacted by non-CpG cytosine
methylation, in practice it never amounts to much.
Identifying hypomethylated regions (HMRs) :
In most mammalian cells, the majority of the genome has high
methylation, and regions of low methylation are typically the
interesting features. (This seems to be true for essentially all
healthy differentiated cell types, but not cells of very early
embryogenesis, various germ cells and precursors, and placental
lineage cells.) These are valleys of low methylation are called
hypomethylated regions (HMR) for historical reasons. To identify
the HMRs, we use the dnmtools hmr
command, which uses
a statistical model that accounts for both the methylation level
fluctations and the varying amounts of data available at each CpG
site.
Partially methylated domains :
Partially methylated domains are large genomic regions showing
partial methylation observed in immortalized cell lines and
cancerous cells. The pmd
program is used to identify
PMDs.
Allele-specific methylation :
Allele-Specific methylated regions refers to regions where the
parental allele is differentially methylated compared to the
maternal allele. The program allelic
is used to
compute allele-specific methylation score can be computed for each
CpG site by testing the linkage between methylation status of
adjacent reads, and the program amrfinder
is used to
identify regions with allele-specific methylation.
For more detailed description of the methods of each step, please
refer to
the DNMTools
documentation .
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