| Common | Common methbase tracks for the mm39 assembly |
| DRP000505 | Mouse DNA methylome (MethylC-seq) [Blastocyst, ESC, Sperm] |
| DRP000598 | Mouse oocyte methylome [Oocyte] |
| DRP000638 | Mouse PGC DNA methylome (PBAT) [Primordial Germ] |
| DRP002386 | Methylome and gene expression of neonatal prospermatogonia and early postnatal undifferentiated and differentiating spermatogonia [Testes] |
| DRP003273 | Methylome and transcriptome dynamics during mouse germ cell specification/differentiation in vitro |
| DRP003407 | Software updates in the Illumina HiSeq platform affect whole-genome bisulfite sequencing [EpiLC, IMR-90, Spermatogonia] |
| DRP003544 | Mouse NS/PCs DNA methylome (PBAT) [Astrocyte, ESC, Neural Stem/Progenitor, Neuron, Oligodendrocyte] |
| DRP003670 | Methylome of expanded mouse primordial germ cell-like cells [BVSC] |
| DRP004153 | Mouse blactocyst methylome [Blastocyst, Parthenogenetic Blastocyst] |
| DRP004308 | MIWI2 targets RNAs transcribed from piRNA-dependently methylated regions in mouse gonocytes [Gonocyte] |
| DRP006395 | The role of DNMT3B in inflammation-related hepatocarcinogenesis |
| DRP008086 | DNA methylation analysis of oocytes in a PCOS mouse model [Oocyte] |
| DRP008292 | Whole genome bisulfite sequence of tissue and organoid |
| DRP008439 | The DNMT3A ADD domain recognizing histone H3K4me0 is essential for processive DNA methylation and maternal imprinting in mouse oocytes [Embryo E10.5, Oocyte, Parthenogenesis Blastocyst] |
| DRP008539 | Investigation of the effects of sperm DNA methylation disturbance by testicular histone hyperacetylation on the next generation in mouse [Sperm] |
| DRP010625 | The identification of differentially methylated genes between hepatocytes and skeletal muscle of wild-type mice [Hepatocyte, Muscle] |
| DRP010881 | Role of Tet3 in DNA demethylation in mouse SCNT embryos [SCNT embryo] |
| DRP011267 | whole genome bisulfite sequencing of colon and colon-derived organoids [Colon, Colon-Derived Organoid] |
| DRP011537 | Tracking hematopoietic stem cell aging reveals its heterogeneous composition [Bone Marrow] |
| DRP012798 | The identification of differentially methylated genes between hepatocytes of wild-type and ob/ob mice |
| ERP001204 | DNA_methylation_reprogramming_in_PGCs [ESC, Epiblast Cells, Primordial Germ] |
| ERP001632 | B_Cell_Methylome [B Cells] |
| ERP001953 | The dynamics of genome-wide DNA methylation reprogramming in mouse primordial germ cells [Epiblast, J1 ES, Primordial Germ] |
| ERP003744 | DNMT3_KO_BS_seq [EPC, Epiblast] |
| ERP003907 | Methylome_and_Hydroxymethylome_of_iPSC [DNA from ESC, DNA from MEF, DNA from iPSC] |
| ERP004116 | Whole genome bisulfite sequencing of samples reprogramming to iPSC [iPSC] |
| ERP004476 | Reprogramming_around_an_epigenetic_barrier_with_TET1 [EpiSC] |
| ERP005247 | DNA methylation is required for the control of stem cell differentiation in the small intestine [Small Intestine] |
| ERP008742 | Germ_cell_methylation_dynamics [308-D5 TE Embryo 1, 308-D5 TE Embryo 2, 693-D6 TE Embryo 2, A3 mPGCLC1, BS treated DNA PBAT library, C3 mPGCLC2, D2 mPGCLC1, D3 mPGCLC2, E3 mPGCLC2, F1 hPGCLC1, F2 mPGCLC1, F3 mPGCLC2, G2 mPGCLC1, G3 mPGCLC2, H3 mPGCLC2, P11(4), P14(2), P8(3), PBAT libraries of human ESCs H9, PBAT libraries of mouse ESCs E14 G7, PRGp8 4, Passage 10 Sort 2, Passage 10 Sort 3, Passage 10 Sort 4, S6EOSKSR 1, S6EOSKSR 3, S6EOSp15 1, S6EOSp15 2, S6EOSp5 3, S6EOSp9 1, S6EOSp9 2, S6EOSp9 3, hES1, hES2, hES3, hEpiLC 2016214 2, hEpiLC 201635, hKSR2, hKSR3, mEpiLC E14 d1 1, mEpiLC E14 d2 2] |
| ERP010942 | We present the first genome-scale analysis of the effect of CpG methylation on DNA-binding of TFs. [Embryo, GP5D, LHSAR cell with HOXB13 transduced, Lhsar, LoVo, VCap] |
| ERP012781 | Mice deficient of Myc super-enhancer region reveal a differential control mechanism between normal and pathological growth |
| ERP015660 | Quantifying epigenotype variations between mouse B and CD4+ T lymphocytes [Spleen] |
| ERP016240 | Genome-wide DNA methylation landscape defines specialization of regulatory T cells in tissues [Liver, Skin] |
| ERP022031 | Epigenetic regulation and transcriptional repression by Tet1 in the early post-implantation mouse embryo: WG Bisulfite sequencing [B6 incipient congenic (N5 >95% B6) epiblast-like] |
| ERP022077 | A MILI independent piRNA biogenesis pathway residually loads MIWI2 empowering partial germline reprogramming activity. [Testis] |
| ERP107409 | Defective germline reprogramming rewires the spermatogonial transcriptome [Testis] |
| ERP107948 |
DEEP data release for IHEC/EpiRR 2018 data freeze. [Fibroblast, Hepatocyte, Liver, White Adipocyte] |
| ERP110807 | Methylation_profiles_in_cancer_induced_mouse_liver_tumours |
| ERP120304 | Multi-omics characterization of MEK inhibitor resistant pancreatic cancer based on a genetically engineered mouse model-derived in vitro system |
| ERP126361 | DNA methylation profiles of mouse sperm in response to antibiotic-induced gut microbiota dysbiosis using whole-genome bisulfite sequencing [Cauda Epididymal Sperm] |
| ERP128231 | CpG island reconfiguration for the establishment and synchronization of polycomb functions upon exit from naive pluripotency [mESCs] |
| ERP130901 | Epigenomic rewiring of mouse hippocampus after resistance and endurance exercise training [Hippocampus] |
| ERP138895 | Study of a mouse model of angioimmunoblastic T-cell lymphoma |
| ERP139499 | Whole genome bisulfite sequencing of liver samples of five mammals (human, rhesus macaque, mouse, rat and dog) [Liver] |
| ERP155689 | Whole Genome Bisulfite Sequencing of CLDN6High vs CLDN6Low Sorted EpiSCs and APSD, and WT vs Pbx1-KO EpiSCs [24h differentiation, Epiblast Cell] |
| ERP172394 | Whole-genome oxidative bisulfite sequencing and data processing of mouse intestinal stem cells with old and young mitochondria [Small Intestine] |
| SRP004162 | Dynamic epigenomic oscillations in differentiated cells |
| SRP007354 | DNA binding factors shape the mouse methylome at distal regulatory regions [BIS_seq] [ES-derived neuronal progenitor, ESC] |
| SRP011945 | Base Resolution Analysis of 5-Hydroxymethylcytosine in the Mammalian Genome [ES Cells, ESC] |
| SRP013702 | Dnmt3a protects active chromosome domains against cancer-associated hypomethylation [Lung] |
| SRP013703 | GSE57230: Widespread contribution of transposable elements to the innovation of gene regulatory networks [mouse ENCODE] [Bone Marrow, Cerebellum, Cerebral Cortex, Embryonic Facial Prominence, Forebrain, Heart, Hindbrain, Intestine, Kidney, Large Intestine, Limb, Liver, Lung, Midbrain, Neural Tube, Olfactory Bulb, Small Intestine, Spleen, Stomach, Thymus] |
| SRP016893 | Whole-genome bisulfite sequencing of two distinct interconvertible DNA methylomes of mouse embryonic stem cells [ES-cells] |
| SRP017139 | Dnmt2-dependent methylomes lack biologically relevant DNA methylation patterns [ES Cells] |
| SRP017350 | Density and methylation state of CpG dinucleotides define histone variant specific retention of nucleosomes in mouse spermatozoa [Sperm] |
| SRP017503 | Tissue-specific methylomes reveal epigenetic memory in adult mouse tissue [Bone Marrow, Cerebellum, Colon, Cortex, Heart, Intestine, Kidney, Liver, Lung, Olfactory Bulb, Pancreas, Placenta, Skin, Spleen, Stomach, Thymus, Uterus] |
| SRP017572 | FGF Signaling Inhibition in ESCs Drives Rapid Genome-wide Demethylation to the Epigenetic Ground State of Pluripotency [ES Cells] |
| SRP018523 | Bisulfite-Seq profiling of undifferentiated ESCs, and in vitro derived primordial germ cells (iPGCs) [ESCs-Rosa26-GFP, ESCs-V6.5, iPGCs, iPGCs-Rosa26-GFP, iPGCs-V6.5] |
| SRP018963 | High resolution nulceotide level methylation map of female mouse primary keratinocytes [Primary Keratinocytes] |
| SRP019026 | CG methylated microarrays identify novel methylated sequence bound by the CEBPB|ATF4 heterodimer that are active in vivo [Primary Dermal Fibroblasts] |
| SRP020633 | Mus musculus Epigenomics |
| SRP025152 | Epigenetic and genetic changes during mouse hematopoietic stem cell aging [Bisulfite-Seq] [Murine bone marrow derived primary HSCs] |
| SRP025993 | Maintenance of DNA methylation in embryonic stem cells depends on the histone H3K9 methyltransferases (K9 KO Methyl-Seq) [ESC] |
| SRP025996 | Maintenance of DNA methylation in embryonic stem cells depends on the histone H3K9 methyltransferases (Dnmt3ab KO Methyl-Seq) [ESC] |
| SRP026048 | Global epigenomic reconfiguration during mammalian brain development [Brain (Cerebral Cortex), Brain (Dorsal Prefrontal Cortex), Brain (Frontal Cortex), Brain (Middle Frontal Gyrus), ESC] |
| SRP026536 | 5mC Oxidation by Tet2 Modulates Enhancer Activity and Timing of Transcriptome Reprogramming during Differentiation [ESC] |
| SRP028709 | Large conserved domains of low DNA methylation maintained by 5-hydroxymethycytosine and Dnmt3a [Bisulfite-Seq] [Murine bone marrow derived primary HSCs] |
| SRP028826 | Gene expression and chromatin analysis of fused mouse-rat cells [Immortalized mouse Tail Fibroblast] |
| SRP029721 | Genome-wide regulatory domains and their interactions in Mus musculus [Hematopoetic Stem Cell, splenic B cells] |
| SRP029902 | Role of de novo DNA methyltransferases in hematopoietic stem cells (WGBS) [Murine bone marrow derived primary HSCs] |
| SRP032967 | Distribution, recognition and regulation of non-CpG methylation in the adult mammalian brain (Bisulfite-seq) [Dentate Gyrus] |
| SRP033288 | Dynamic DNA methylation in cardiac myocyte development, maturation and disease [Cardiac, Cardiac Myocyte] |
| SRP033304 | The complete methylome of hematopoietic stem cells and their immediate progeny [HSC (LSK CD34-CD48-CD150+), MPP (LSK CD34+ CD48+ CD150-), MPP1 (LSK CD34+ CD48-CD150+), MPP2 (LSK CD34+ CD48+ CD150+)] |
| SRP034857 | Large conserved domains of low DNA methylation maintained by 5-hydroxymethycytosine and Dnmt3a (CMS bisulfite-seq) [Murine bone marrow derived primary HSCs] |
| SRP037785 | Two waves of de novo methylation during mouse germ cell development [Germ] |
| SRP039504 | Single base resolution analysis of 5-formyl and 5-carboxyl cytosine reveals the actual promoter DNA methylation dynamics in embryonic stem cells [MAB-Seq] [ESC] |
| SRP040524 | CG hypomethylation in Lsh-/- mouse embryonic fibroblasts is associated with de novo H3K4me1 formation and altered cellular plasticity [Cell Line, primary MEFs] |
| SRP040627 | Imprinted expression is different in visceral yolk sac and cystic embryoid body endoderm [Visceral Yolk Sac Endoderm] |
| SRP041083 | Programming and inheritance of parental DNA methylomes in mammals [2-cell embryo, 4-cell embryo, E13.5 female PGC, E13.5 male PGC, E3.5 embryo, E6.5 embryo, E7.5 embryo, Inner Cell Mass, MII oocyte, Sperm] |
| SRP041257 | Single-Cell Whole-Genome Bisulfite Sequencing for Analysis of Epigenetic Heterogeneity [ESCs (E14)] |
| SRP041376 | Tet proteins in DNA demethylation and cell fate restriction [Cell Line] |
| SRP041760 | Genomic profiling of DNA methyltransferases reveals a role for DNMT3B in genic methylation [Bisulfite-Seq] [ESC] |
| SRP041847 | Altered epigenetic programming links intestinal inflammation to colon cancer (Bisulfite-seq) [Colon] |
| SRP042360 | Dnmt3L-histone H3 binding is necessary for male fertility and non-CG methylation [DNMT3 A/A, Wild Type] |
| SRP042409 | Rlf, a widely-spaced zinc finger protein, is involved in maintaining epigenetic marks at CpG island shores and enhancer elements across the genome [Embryo, Liver] |
| SRP043370 | Tet1 and Tet2 mediate epigenetic regulation of developmental genes by protecting DNA methylation canyons against hypermethylation [Bisulfite-Seq] [Embryonic Fibroblasts] |
| SRP045054 | The developmental potential of iPSCs is greatly influenced by the selection of the reprogramming factors [ESC, Induced Pluripotent Stem Cell] |
| SRP045179 | Gender-specific post-natal demethylation and establishment of epigenetic memory [Liver] |
| SRP045747 | Setdb1 is required for persistence of H3K9me3 and repression of endogenous retroviruses in mouse primordial germ cells [SSEA1+ primordial germ] |
| SRP047165 | Distinct roles of DNMT1-dependent and –independent methylation patterns in the genome of mouse ES cells [ESC] |
| SRP047397 | Genome-wide characterization of DNMT-deficient mouse ESCs reveals dynamicity of differentially-methylated-regions and its impact on bivalency composition [ES] |
| SRP049191 | Single-base resolution analysis of active DNA demethylation using methylase-assisted bisulfite sequencing [ESC] |
| SRP049223 | Transcription and Imprinting Dynamics in Developing Postnatal Male Germline Stem Cells [Spermatogonia] |
| SRP049674 | Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain [Brain (Neocortex)] |
| SRP049697 | DNA methylation status of Individual 4T1 Clonal Populations [Cell Line] |
| SRP049936 | DNA methylation in mammalian placentas [Cerebrum, Cordblood, Extraembryonic Membrane, Placenta, Trophoblasts] |
| SRP049965 | MORC1 represses transposable elements in the mouse male germ line [Sorted Germ] |
| SRP050145 | An alternative pluripotent state confers interspecies chimaeric competency [WGBS] [E5.75 derived EpiSCs, E5.75 derived rsEpiSCs] |
| SRP052235 | HP1 is involved in regulating the global impact of DNA methylation on alternative splicing [ESC] |
| SRP055147 | Maternal DNA methylation regulates early trophoblast development [Trophoblast] |
| SRP056705 | An epigenetic memory of pregnancy in the mouse mammary gland [Mammary Gland] |
| SRP057157 | Competition between DNA methylation and transcription factors determines binding of NRF1 [ESC] |
| SRP057505 | Active DNA demethylation at enhancers during the vertebrate phylotypic period [Brain, Whole Embryo, sox10+] |
| SRP059433 | Gender Differences in Global but not Targeted Demethylation in iPSC Reprogramming [BS seq AIDKO MEF1, BS seq ESC 1, BS seq ESC 2, BS seq ESC 3, BS seq MALE MEF 1, BS seq MALE MEF 2, BS seq MALE MEF 3, BS seq MEF 1, BS seq MEF 2, BS seq MEF 3, BS seq d6 Thy1 positive 1, BS seq d6 Thy1 positive 2, BS seq d6 Thy1 positive 3, Fibroblast, Reprogramming Fibroblast, iPSC] |
| SRP059940 | Chromatin dynamics and the role of G9a in gene regulation and enhancer silencing during early mouse development [Epiblast Stem Cell, Epiblast-Like] |
| SRP060643 | De novo DNA methyltransferases DNMT3A and DNMT3B are essential of global DNA methylation maintenance [BS-Seq] [ES-cells] |
| SRP060646 | De novo DNA methyltransferases DNMT3A and DNMT3B are essential of global DNA methylation maintenance [TAB-Seq] [ES-cells] |
| SRP060660 | MIWI2 and MILI have differential effects on piRNA biogenesis and DNA methylation [MACS sorted (a-EpCAM G8.8 antibody sc-53532) spermatocytes] |
| SRP061339 | Sequence Features Accurately Predict Genome-wide MeCP2 Binding in vivo [Olfactory Epithelium] |
| SRP061876 | An epigenetic switch ensures transposon repression upon acute loss of DNA methylation in ES cells (WGBS) [J1 WT mouse ES] |
| SRP062482 | TET proteins regulate lineage specification and TCR-mediated expansion of iNKT cells (WGBS) [iNKT cells] |
| SRP062557 | DNMT3A and TET2 Compete and Cooperate to Repress Differentiation Lineage-Specific Factors in Hematopoietic Stem Cells [Tet2 and Dnmt3a double knockout Hematopoietic stem cell, Tet2 knockout Hematopoietic stem cell] |
| SRP062575 | Genetic and epigenetic variation among inbred littermates: identification of metastable epialleles in the mouse [Liver] |
| SRP062705 | Whole genome bisulfite sequencing of sperm from a mouse heterozygous for a mutation in Setdb1 (MommeD13) and a wildtype mouse. [Sperm, Zygote] |
| SRP063015 | Epigenomic Landscapes of Retinal Rods and Cones [Retina] |
| SRP063093 | Acute loss of TET function results in aggressive myeloid cancer in mice [WGBS] [LSK] |
| SRP063275 | New roles for DNA cytosine modification, eRNA, anchors and super-anchors in developing B cell progenitors [Rag1 deficient pro-B, Tcf3(E2A) deficient pre-pro-B] |
| SRP063453 | Unique Broad Histone Lysine 4 Methylation Domains in Mouse Oocytes and Dynamic Regulation during Maternal to Zygotic Transition [P12 oocyte, P15 oocyte] |
| SRP065034 | Mus musculus and Mus spretus sperm methylation [Testis] |
| SRP065509 | Trans-effects of sub-chromosomal duplications on DNA methylation patterns in mouse models of Down syndrome: whole genome bisulfite sequencing of cerebral samples from Dp(10)1Yey and Dp(16)1Yey mouse models. [Whole cerebral hemispheres (with meninges removed)] |
| SRP065556 | Dynamic Changes in Histone Modifications Precede de novo DNA Methylation in Oocytes [Oocyte] |
| SRP066668 | genomic DNA from MEF cells [Cultured MEF] |
| SRP067094 | Chromatin decompaction coupled MuERVL endogenous retrovirus activation induces genome-wide DNA demethylation [E14 ESC] |
| SRP067341 | DNA methylation oscillations at CpG poor enhancers in primed embryonic stem cells [PBAT Bisfulfite-seq] [E14 ESC] |
| SRP067447 | Genetic and Epigenetic Variation, but Not Diet, Shape the Sperm Methylome [Cauda Epididymis And Vas Deferens] |
| SRP068043 | Dynamic epigenomic landscapes during early lineage specification in mouse embryos [ESC, Ectoderm, Endoderm, Epiblast, Inner Cell Mass, Mesoderm, Primitive Streak, Trophectoderm, Visceral Endoderm] |
| SRP068730 | Epigenetic reprogramming enables the primordial germ cell-to-gonocyte transition (WGBS) [PGC] |
| SRP069120 | Mus musculus strain:C57BL/6 Epigenomics [Liver, MEFs in culture] |
| SRP069139 | ZFP57 maintains the parent-of-origin-specific expression of the imprinted genes and differentially affects non-imprinted targets in mouse embryonic stem cells (BS-seq and RRBS) [ESC] |
| SRP069154 | Isoform switch of TET1 regulates DNA demethylation and mouse development [mESCs] |
| SRP070637 | Single-cell multi-omics sequencing of mouse early embryos and embryonic stem cells [ESC] |
| SRP070642 | Methylation and gene expression profiling in Dnmt3a-deficient chronic lymphocytic leukemia and peripheral T-cell lymphoma in mice. [Spleen] |
| SRP071233 | Iron-Heme-Bach1 Axis Is Involved In Erythroblast Adaptation To Iron Deficiency [erthroblast (Bach1 KO), erthroblast (WT)] |
| SRP071782 | Mammalian sperm exhibit epigenetic priming of embryonic and adult regulatory landscapes (BS-Seq) [Sperm] |
| SRP074072 | WGBS assessment of global methylation alterations in Dnmt3aKO/FLT3-ITD lymphoid leukemia [Leukemic, Murine thymus derived CD4/CD8 double positive T cells] |
| SRP074379 | Genome-wide map of DNA methylation to unravel the function of EBF1 C-terminus domain [Fetal Liver] |
| SRP075309 | Mus musculus Epigenomics [ES] |
| SRP075981 | GEO accession GSE82125 is currently private and is scheduled to be released on May 30, 2017. [ES-derived neural progenitor, ESC] |
| SRP076056 | Role of Tet proteins in B cell development [Pro B cells] |
| SRP077875 | Allele-Specific Non-CG Methylation Marks Domains of Active Chromatin in Mouse Brain [Brain (Prefrontal Cortex)] |
| SRP077894 | Single base resolution of the complete 5-mC and 5-hmC cardiac methylome in heart failure [Whole Heart] |
| SRP078059 | The de novo DNA methyltransferase DNMT3C protects male fertility from transposon activity (Bisulfite-seq). [10 dpp total germ] |
| SRP078072 | Derivation of ground-state female ESCs maintaining gamete-derived DNA methylation [ES Cells] |
| SRP078328 | Epigenetic restriction of embryonic and extraembryonic lineages mirrors the somatic transition to cancer (WGBS) [Extraembryonic Ectoderm, Inner Cell Mass, Trophectoderm, precompacted 8 cell stage embryos, proximal Epiblast] |
| SRP078445 | DNA Methylation Divergence and Tissue Specialization in the Developing Mouse Placenta [Whole Placenta] |
| SRP078848 | Whole genome bisulfite and TAB-Sequencing from sorted neurons in the adult mouse brain [Brain] |
| SRP078871 | Whole genome bisulfite sequencing of adult hypothalamus male mouse brain [Hypothalamus Region From Brain] |
| SRP078942 | Cis-regulatory landscape of four cell types of the retina [Cones, Horizontal Cells, Rods, Starbust Amacrine] |
| SRP080866 | DNA methyltransferase 3b regulates articular cartilage homeostasis by altering chondrocyte metabolism [Primary Articular Chondrocytes] |
| SRP081004 | Postnatal DNA demethylation and its role in tissue maturation [Hepatocyte] |
| SRP081133 | DNA methylation repels binding of hypoxia-inducible transcription factors to maintain tumour immunotolerance [WGBS] [Inner Cell Mass] |
| SRP081312 | DNA methylation regulates intron retention via altered MeCP2-mediated splicing factor recruitment [Whole Blood] |
| SRP081475 | Methylomes of wild-type and MeCP2 knockout brain cells [Brain] |
| SRP082360 | Epigenetic memory of obesity in mouse colonic epithelium [Colon] |
| SRP083753 | LKB1 loss links the serine metabolic network to DNA methylation and tumourigenesis [bisulfite-seq] [Pancreas] |
| SRP083895 | Transcription and chromatin determinants of the rate of de novo DNA methylation in oocytes [Oocyte] |
| SRP089825 | Enhanced Pluripotent Cell Function through miR-203-mediated Control of DNA Methylation [Ebs from iPs WT (10 days of differentiation), Ebs from iPs miR-203 KI-N5 + DOX, Ebs from iPs miR-203 KI-N9 + DOX, iPs WT long after DOX, iPs WT short after DOX, iPs WT t=0, iPs miR-203 KI-N5 (t=0), iPs miR-203 KI-N5 long after DOX, iPs miR-203 KI-N5 short after DOX, iPs miR-203 KI-N9 (t=0), iPs miR-203 KI-N9 long after DOX, iPs miR-203 KI-N9 short after DOX] |
| SRP089858 | A novel requirement for Drosha in maintenance of mammalian CG methylation [ESCs (ES cells)] |
| SRP090139 | Analyzing whole genome bisulfite sequencing data from highly divergent genotypes [Liver] |
| SRP090219 | The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis [WGBS_Mm] [ESC, Embryonic Fibroblasts, Retina, derived iPSCs fMG02, derived iPSCs fMG03, immature retinal-derived iPSCs 8601, mature retinal-derived iPSCs 3302, mature retinal-derived iPSCs 7602] |
| SRP090249 | Whole Genome Bisulfite Sequencing in Pax7-reprogrammed corticotropes AtT-20 cells [Pituitary Corticotroph] |
| SRP090505 | DNA methylation profiling of vascular maturation [Lung] |
| SRP090698 | Epigenetic Memory Underlies Cell Autonomous Heterogeneous Behavior of Hematopoietic Stem Cells [Lks Slam] |
| SRP090852 | Vitamin C induced epigenomic remodeling in IDH1 mutant acute myeloid leukemia [HOXA9 immortalized bone marrow] |
| SRP091011 | Tracking of dCas9-methyltransferase footprints [mESCs] |
| SRP091938 | Increased H3K9 methylation and impaired expression of Protocadherins are associated with the cognitive dysfunctions of the Kleefstra syndrome [Brain] |
| SRP092244 | Diverse interventions that extend mouse lifespan suppress shared age-associated epigenetic changes at critical gene regulatory regions (WGBS 1) [Hepatocyte] |
| SRP092247 | Diverse interventions that extend mouse lifespan suppress shared age-associated epigenetic changes at critical gene regulatory regions (WGBS 2) [Hepatocyte] |
| SRP092540 | WGBS assessment of global methylation alterations in hematopoietic stem and progenitor cells [methyl-seq] [Intermediate-Term Hematopoietic Stem Cell, Long-Term Hematopoietic Stem Cell, Multi-Potent Progenitor, Short-Term Hematopoeitic Stem Cell] |
| SRP094653 | ncRNA transcription-induced changes in nuclear architecture directs with high precision enhancer-promoter interaction [in-vitro DN2] |
| SRP095235 | Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism [Liver] |
| SRP095627 | DNA methylomes at base resolution of mouse embryonic fibroblasts in G1 and G2 phase of cell cycle [Embryonic Fibroblasts (MEFs)] |
| SRP097054 | DNA methylation of SAMP8 and SAMR1 mice [Cerebral?Cortex] |
| SRP097617 | MLL2 conveys transcription-independent H3K4me3 in the oocyte [Germinal Vesicle Oocytes] |
| SRP099007 | Microglia isolated from juvenile offspring of dams with allergic asthma exhibit methylation and transcriptional alterations to autism risk genes [WGBS] [Brain] |
| SRP099066 | The BLUEPRINT Murine Lymphocyte Epigenome Reference Resource. [Whole Genome Bisulfite-Seq] [CD4+CD62L+ T cells, CD43-B cells] |
| SRP099067 | The BLUEPRINT Murine Lymphocyte Epigenome Reference Resource. [Whole Genome Bisulfite-Seq_OX] [from CD4+CD62L+ T cells, from CD43-B cells] |
| SRP100972 | 5-hydroxymethylcytosine Accumulation in Postmitotic Neurons Results in Functional Demethylation of Expressed Genes [MethylC-Seq and oxBS-Seq] [Cerebellar Granule Cells] |
| SRP101416 | Whole-genome bisulfite-seq (WGBS) on Lin-Sca1+Kit+ (LSK) bone marrow cells from wild-type C57BL/6J mice [Lin-Sca1+Kit-] |
| SRP101453 | Environmental enrichment increases transcriptional and epigenetic differentiation between mouse dorsal and ventral dentate gyrus neurons [Brain (Dentate Gyrus Of The Hippocampus)] |
| SRP101591 | Simultaneous mapping of active DNA demethylation and sister chromatid exchange in single cells [Around 100 mouse ESCs E14] |
| SRP101774 | Isoform-specific localization of DNMT3A regulates DNA methylation fidelity at bivalent CpG islands [WGBS] [ESC] |
| SRP103077 | Mapping DNA methylation and CTCF/cohesin occupancy on nascent chromatin and DNMT-targeted nascent chromatin [ESC] |
| SRP103763 | Whole-genome analysis of 5-hydroxymethylcytosine and 5-methylcytosine at base resolution in the mouse brain [Cerebellum, Cortex, Olfactory Bulb] |
| SRP105210 | Loss of Dnmt3a Immortalizes Hematopoietic Stem Cells in vivo [WGBS] [Hematopoietic Stem Cell] |
| SRP105270 | Reprogramming of H3K9me3-dependent heterochromatin during mammalian early embryo development [WGBS] [4-cell embryo, 6.5 day embyo epiblast, 6.5 day embyo extraembryonic ectoderm, 7.5 day embyo epiblast, 7.5 day embyo extraembryonic ectoderm, 8-cell embryo, Inner Cell Mass, Morula Embro, Trophoblast, Zygote, early 2-cell embryo, late 2-cell embryo] |
| SRP106356 | Activation of Lineage-Regulators and Transposable Elements Across a Pluripotent Spectrum [2i N2B27 BL6, 2i/LIF GMEM/10% KSR BL6, 2i/LIF GMEM/10% serum 129, 2i/LIF N2B27 BL6, Ch/LIF N2B27 BL6, Pd/LIF N2B27 BL6, Serum/LIF Feeders GMEM BL6, Serum/LIF GMEM 129] |
| SRP108295 | De novo epigenetic programs inhibit PD-1 blockade-mediated T-cell rejuvenation [WGBS] [Antigen-specific CD8 T cells, Naive CD8 T cells] |
| SRP108349 | Enhancing the Potency of Mouse Embryonic Stem Cells [BS-Seq] [ESC] |
| SRP108476 | Whole genome bisulfite sequencing of Ing1/Gadd45a double knockout and wildtype mouse embryonic fibroblasts [Embryonic Fibroblasts (MEFs)] |
| SRP109758 | Cytosine methylation dynamics during spermatogenesis and post-testicular sperm maturation [Primary, Sperm] |
| SRP109785 | Paternal cold exposure enhances brown adipose tissue sensitivity in offspring and ameliorates diet induced obesity [Sperm] |
| SRP109867 | Base-resolution analysis of DNA methylation patterns downstream of Dnmt3a in mouse naïve B cells [Spleen] |
| SRP110902 | DNMT3A haploinsufficiency predisposes hematopoietic cells to myeloid malignancies [Bone Marrow] |
| SRP111167 | DNA methylation dynamics during embryonic development and postnatal maturation of the auditory organ of Corti [Organ Of Corti] |
| SRP111382 | WGBS assessment of global methylation alterations in Dnmt3aKO or Dnmt3bKO mouse embryonic stem cells [ESC] |
| SRP111384 | rahu is a mutant allele of Dnmt3c, encoding a DNA methyltransferase homolog required for meiosis and transposon repression in the mouse male germline [WGBS] [Whole Testis] |
| SRP111470 | Whole genome bisulfite sequencing of mouse neural progenitor cells and neurons from the mouse cerebral cortex at day 15.5 of embryonic development [Cortical Neurons, Neural Progenitor] |
| SRP113186 | Integrative Proteomic Profiling Reveals PRC2-Dependent Epigenetic Crosstalk Maintains Ground-State Pluripotency. [ESC] |
| SRP113409 | Transcriptional and epigenetic profiling of aged mouse SVZ-derived neural stem / progenitor cells [SVZ-derived neural stem / progenitor] |
| SRP113417 | Chromatin and Transcriptional Dynamics in Adult Germline Stem Cells and Mammalian Spermatogenesis [Spermatogonia (Thy1+), Testis] |
| SRP113606 | Transient and permanent reconfiguration of chromatin and transcription factor occupancy drive reprogramming [MEF, MEF derived induced pluripotent stem cell, day12 MEF reprogramming intermediates, day3 MEF reprogramming intermediates, day6 MEF reprogramming intermediates, day9 MEF reprogramming intermediates] |
| SRP115607 | A role of Polycomb in the maintenance of hypomethylation for DNA methylation valley [mESCs] |
| SRP116373 | Early-life gene expression in neurons modulates lasting epigenetic states. [Bisulfite-seq] [Cortex, Hippocampus] |
| SRP116554 | Snord116-dependent diurnal rhythm of DNA methylation in mouse cortex [Cerebral Cortex] |
| SRP117079 | Transcription factors drive Tet2-mediated enhancer demethylation to reprogram cell fate [Bisulfite-Seq] [Bone Marrow, Embryo (Inner Cell Mass), Inner Cell Mass] |
| SRP118911 | High-Resolution Dissection of Conducive Somatic Cell Reprogramming to Naïve Ground State Pluripotency in Mbd3/NuRD and Gatad2a/NuRD Depleted Systems [WGBS] [Gatad2a-/-cell line, Mbd3f/-cell line, WT cell line] |
| SRP119143 | Transcriptomic and epigenomic analysis during conversion from mouse microglia into induced-neuronal (iN) cells [Cortex] |
| SRP119366 | Long genes linked to autism harbor intragenic super-enhancer-like chromatin domains [Cortical Excitatory Neurons] |
| SRP119705 | DNA hypermethylation encroachment at CpG island borders in cancer is predisposed by H3K4 monomethylation [WGBS_Mm] [Spleen bulk B cells, blood (B cell-depleted)] |
| SRP123210 | Genetics, sex and life experience influence DNA methylation in the mouse [Liver] |
| SRP123612 | Novel Principles of Cellular Reprogramming Revealed by Prospective Isolation and Characterization of Rare Intermediates Poised to Generate iPSCs [WGBS] [MEF, Reprogramming Intermediate, iPSC] |
| SRP125227 | Next Generation Sequencing for Genome-wide Maps of DNA Methylaton in mES Cells [ESC] |
| SRP125320 | Effector CD8 T cells dedifferentiate into long-lived memory cells [Acute GP33-specific CD8 T cells, Acute Memory Precursor P14, Acute Terminal Effector P14, P14 CD8 T cells] |
| SRP125421 | Dynamic EBF1 occupancy directs sequential epigenetic and transcriptional events in B cell programming [Bisulfite-Seq-Cre] [Ebf1-deficient B cell progenitors] |
| SRP125690 | Forniceal deep brain stimulation induces gene expression and splicing changes that promote neurogenesis and synaptic plasticity [Dentate Gyrus] |
| SRP126875 | Differences in cell cycle status underlie transcriptional heterogeneity in the HSC compartment [HSC] |
| SRP127685 | Setd2 deficiency impairs hematopoietic stem cell self-renewal and causes malignant transformation [Bone marrow LSK] |
| SRP127792 | Single-cell dissection of long non-coding RNAs pivotal for embryonic hematopoietic stem cell development [T1 pre-HSC] |
| SRP130993 | SCNT embryos are defective for H3K27me3 imprinting [RNA-seq] [Blastocysts Generated With Somatic Nuclear Transffer] |
| SRP131922 | Analysis of genetically diverse macrophages reveals local and domain-wide mechanisms that control transcription factor binding and function [bone marrow derived macropages (BMDM)] |
| SRP132683 | DNA (de)methylation in embryonic stem cells controls CTCF-dependent chromatin boundaries [ESC] |
| SRP133323 | Extensive recovery of embryonic enhancer and gene memory stored in hypomethylated enhancer DNA. [Intestinal Villus, Midgut Epithelial] |
| SRP133565 | Genome-wide identification of distinct target loci for de novo DNA methylation by DNMT3A and DNMT3B during mammalian development [MEFs] |
| SRP133698 | Global DNA methylation remodeling during direct reprogramming from fibroblast to neuron [MethylC-seq] [Direct reprogramming from fibroblast to neuron induced with Ascl1 for 2 days, Direct reprogramming from fibroblast to neuron induced with Ascl1 for 22 days, Direct reprogramming from fibroblast to neuron induced with Ascl1 for 5 days, Direct reprogramming from fibroblast to neuron induced with BAM for 22 days, Direct reprogramming from fibroblast to neuron induced with BAM for 5 days, Embryonic Fibroblast, Neural Progenitor, Neural progenitor cells differentiated for 14 days, Neural progenitor cells differentiated for 21 days, Neural progenitor cells differentiated for 7 days] |
| SRP135700 | Transcriptional and Epigenomic Landscapes of CNS and non-CNS Vascular Endothelial Cells [Brain, Kidney, Liver, Lung] |
| SRP136257 | Mammalian ISWI and SWI/SNF selectively mediate binding of distinct groups of transcription factors (Bis-seq data sets) [ESC] |
| SRP136419 | WGBS assessment of global methylation alterations in Dnmt3a1KO , Dnmt3a2KO, Dnmt3aKO, Tet1KO and DKO mouse embryonic stem cells [ESC] |
| SRP136449 | Comprehensive analysis of H3K9me2 oocytes, together with DNA methylation and expression analysis of G9a conditional KO oocytes and maternal KO preimplantation embryos [2-cell embryo, Blastocyst, Oocyte] |
| SRP136786 | Bisulfite-free direct detection of 5-methylcytosine and 5-hydroxymethylcytosine at base resolution [E14 mouse ESCs] |
| SRP139083 | DNA 5-methylcytosine specific profiling with limited input [ESC] |
| SRP139795 | Transient reduction of DNA methylation at the onset of meiosis in male mice [Testis] |
| SRP142028 | Mus musculus Epigenomics [Embryonic Fibroblasts (MEFs)] |
| SRP149052 | Single-Cell RNA-Seq Reveals Dynamic Early Embryonic-like Programs during Chemical Reprogramming [CiPSCs, Intermediate, XEN-like] |
| SRP151020 | Inhibition of aberrant DNA re-methylation improves development of cloned embryos (WGBS-Seq) [Cumulus, Embryonic Fibroblast Cell, Nuclear Transfer Embryo, Sertoli] |
| SRP151137 | DNA methylation oscillations at CpG poor enhancers in primed embryonic stem cells [scRNA-Seq, scBS-Seq] [Embryo] |
| SRP151590 | Integrated Genomic Analysis of a Stem Cell Model of Overgrowth Syndrome with Intellectual Disability (WGBS) [J1 ESC, J1 NSC] |
| SRP151725 | Imprecise DNMT1 activity coupled with neighbor-guided correction enables robust yet flexible epigenetic inheritance [mESC, mESC-derived] |
| SRP154319 | Effects of environmental enrichment on postnatal mouse cortex regulome [Brain Cortex] |
| SRP154996 | Epigenetic changes of the thioredoxin system in the tx-j mouse model and in patients with Wilson disease [Liver] |
| SRP155404 | A DNMT3A PWWP mutation leads to methylation of bivalent chromatin and postnatal growth retardation in mice [Epiblast, Hypothalamus, Liver] |
| SRP156136 | MethMotif: An integrative cell specific database of transcription factor binding motifs coupled with DNA methylation profiles [Colon, Spleen] |
| SRP156779 | DNA hypermethylation encroachment at CpG island borders in cancer is predisposed by H3K4 monomethylation [mESC_WGBS] [ESC] |
| SRP158409 | H3K36me2 recruits DNMT3A and shapes intergenic DNA methylation landscapes [C3H embryo-derived mesenchymal progenitor, C57BL/6 x 129S4/SvJae F1 embryo-derived ESCs, Patient-derived head and neck squamous cell carcinoma cell line] |
| SRP158977 | Methylome assays of E14.5 pancreatic progenitor cells [Endocrine Enrichment] |
| SRP159191 | Long-range epigenetic concordance revealed by simultaneous profiling of DNA methylation and chromosomal conformation changes in bulk and single cell Methyl-HiC [ESC line] |
| SRP159665 | WGBS (Whole Genome Bisulfite Sequencing) of Wild-type and Math5-/- mouse dLGN (dorsolateral geniculate nucleus) at postnatal day 6 and postnatal day 23 [Brain] |
| SRP160386 | Perturbation of the OGT-TET1 interaction in mouse embryonic stem cells (WGBS) [Tet1 D2018A mutant knock in mouse stem cell, Wild Type Mouse Stem Cell] |
| SRP161525 | True 5-methylcytosine profiling of late reprogramming stages during in vitro reprogramming of mouse embryonic fibroblasts (MEFs) to induced pluripotent stem cells (iPSCs) [Day 10 totalx2 mCherry+/GFP+, Day 10 totalx2 mCherry+/GFP-, Day 12 naivex2 mCherry+/GFP+, Day 12 naivex2 mCherry+/GFP-, Day 14 naivex2 mCherry+/GFP+, Embryonic Fibroblasts, iPSC] |
| SRP162035 | Activin A and BMP4 Signaling Expands Potency of Mouse Embryonic Stem Cells in Serum Free Media [ESC, Epiblast Stem Cell] |
| SRP162771 | Characterization of the DNA methylome in retinal pigment epithelium (RPE) of adult mice [retinal pigment epithelium (RPE)] |
| SRP163215 | Aging of mouse spermatogonial stem cells by Wnt7b-Jnk pathway activation [Bisulfite-seq] [Testis] |
| SRP165997 | Dynamic enhancer partitioning instructs Zdbf2 activation during epigenetic reprogramming [bisulfite-seq] [Epiblast-like] |
| SRP167689 | WGBS in wild-type and MommeD1mut MEFs [MEFs] |
| SRP167718 | Next Generation Sequencing Combined Analysis of DNA Methylome and Transcriptome Reveal Novel Candidate Genes of Neuroprotective with Response to Ischemic Preconditioning [Brain] |
| SRP168345 | Characterization of the DNA methylome in murine Müller glia [Retina] |
| SRP168393 | DNA methylation in AgRP neurons regulates voluntary exercise behaviour in mice [Neuron] |
| SRP168427 | Tet inactivation disrupts YY1 binding and long-range chromatin interactions to cause developmental defects in embryonic heart [Embryonic Heart] |
| SRP170065 | Differential roles of Stella in the modulation of DNA methylation during oocyte and zygotic development [Female Pronucleus, Male Pronucleus, Oocyte] |
| SRP171165 | Transcriptonal and epigenetic changes of adult liver cells in vivo and in vitro [Adult DDC damaged liver, Adult Healthy Liver] |
| SRP172778 | GR mutation in mice changes the genome-wide epigenome of frontal cortex in a highly sex-specific manner [Frontal Cortex] |
| SRP173239 | DNA methylation estimation using methylation-sensitive restriction enzyme bisulfite sequencing (MREBS) [ESC, Embryonic Fibroblasts] |
| SRP173926 | Loss of non-CpG methylation in inhibitory neurons impairs neural function through a mechanism that partially overlaps with Rett syndrome [Whole Striatum] |
| SRP174096 | Endogenous retroviral insertions drive non-canonical imprinting in extra-embryonic tissues [Bisulfite-Seq] [Epiblast, Extra-embryonic ectoderm] |
| SRP174255 | Effects of combined treatment of EGCG and environmental enrichment on postnatal mouse cortex regulome [Brain Cortex] |
| SRP174491 | FoxA-dependent demethylation of DNA initiates epigenetic memory of cellular identity [Hepatocytes] |
| SRP174666 | Super-enhancer subregions highly bound by the nuclear receptor ESRRB regulate the exit from naïve pluripotency [Epiblast Stem Cells (EpiSCs)] |
| SRP174993 | ChIP-seq and RNA-seq analysis of histone Kcr in the embryonic forebrain and neural stem/progenitor cells. [Forebrain] |
| SRP176417 | Single cell multi-omics analysis reveals novel roles for DNA methylation in sensory neuron injury responses [Neuron] |
| SRP178652 | Branched-chain Amino Acid Aminotransferase-1 Regulates Self-Renewal and Pluripotency of Mouse Embryonic Stem Cells through Ras Signaling [mES] |
| SRP183094 | The intestinal microbiota programs DNA methylation to control tissue homeostasis and inflammation [BiSulfite-seq] [Colon Epithelial] |
| SRP184524 | RNA m6A modification mediated by METTL3 is important for IAP heterochromatin integrity in mESCs (WGBS) [ESC] |
| SRP185723 | WGBS of WT and Smchd1-KO ES cells [ESC] |
| SRP185738 | Characterization of the DNA methylome in embryonic retina, retinal progenitors, and RGCs [Retina] |
| SRP186631 | Epigenetic signatures of chronic social stress in stress-susceptible animals [Nucleus Accumbens] |
| SRP186642 | Genome-wide methyl-cytosine competition by DNMT and TET [ESC, EpiSCs, In Vitro Derived Motor Neurons] |
| SRP186720 | Association Between Early Life DNA Methylation Patterns with Age-Related Transcriptional Changes [Hippocampus] |
| SRP187205 | Methylome profiling of GADD45 deficient mouse embryonic stem cells [ESCs (mESC)] |
| SRP188205 | MeCP2 represses the rate of transcriptional initiation of highly methylated long genes (BS-Seq and OxBS-Seq) [Forebrain] |
| SRP188734 | Downregulation of Uhrf1 activity by TGF-ß signaling controls Foxp3 methylation and iTreg cell differentiation [Lymph Nodes] |
| SRP189864 | Uncoupling histone H3K4 trimethylation from developmental gene expression via an epigenetic equilibrium of Polycomb, COMPASS and DNA methylation [ESC] |
| SRP191868 | Genome-wide analysis of DNA methylation profile in astrocytes isolated from naïve mice or EAE mice transduced with astrocyte-specific Mafg-targeting or non-targeting lentiviruses [WGBS] [Flow Cytometry Sorted Astrocytes] |
| SRP192143 | Setd2 deficiency impaired erythroid differentiation and accelerated Myelodysplastic Syndrome(MDS) - associated leukemogenesis through S100A8 and S100A9 [Bone Marrow, Spleen] |
| SRP193267 | Allelic histone-to-DNA methylation switch establishes secondary DMR to maintain noncanonical imprinting [E6.5 extraembryonic ectoderm] |
| SRP194541 | Whole genome bisulfite genome analysis of OX40L-Jagged-1 expanded Treg and Teff cells [Spleen] |
| SRP195507 | Genome-wide roles of DNA methyltransferases in mouse embryos [Whole Embryos] |
| SRP198282 | Hammer-seq to measure kinetics of DNA methylation maintenance in HeLa cells [Cervix, Inner Cell Mass] |
| SRP199205 | Tox reinforces the phenotype and longevity of exhausted T-cells in chronic viral infection [Bisulfite-Seq] [P14 T-cells] |
| SRP201955 | Analysis of dendritic cell differences [Bone Marrow] |
| SRP212622 | Profiling of DNA Methylation during RANKL Induced Osteoclastogenesis using Whole-Genome Bisulfite Sequencing [Bone Marrow] |
| SRP212761 | Single-cell methylation and accessibility of mouse embryos E6.5 and E7.5. Second batch. [E7.5 embryo] |
| SRP214596 | Dnmt3a and Dnmt3b-mediated decommissioning of fetal enhancers linked to kidney disease [Kidney] |
| SRP215028 | Paradoxical association of TET loss of function with genome-wide hypomethylation [iNKT] |
| SRP216390 | Epigenetic and transcriptional changes in aging mouse rod photoreceptors [WGBS] [Rod Photoreceptors] |
| SRP217940 | Bivalent promoter hypermethylation in cancer is linked to the H327me3/H3K4me3 ratio in embryonic stem cells [ES] |
| SRP219391 | Maternal exposure to a mitochondrial toxicant results in life-long alterations in DNA methylation and gene expression in the offspring [Liver] |
| SRP221485 | Epigenetic regulator function through mouse gastrulation [Extraembryonic Ectoderm, proximal Epiblast] |
| SRP222128 | Genome-wide analysis of methylated DNA in control and Tet2/Tet3-deficient B cells [Primary B cells] |
| SRP222566 | Whole genome bisulfite Sequencing data of four types mouse spermatogenesis [Testis] |
| SRP223436 | Unique Transcription Factor Functions Regulate Epigenetic and Transcriptional Dynamics During Cardiac Reprogramming [alphaMHC-GFP+ sorted induced cardiomyocytes, dsRed+ sorted fibroblasts (control infection)] |
| SRP223513 | G9a plays distinct roles in maintaining DNA methylation, retrotransposon silencing and chromatin looping [ESC] |
| SRP227031 | EED is required for Mouse Primordial Germ Cell Differentiation in the Embryonic Gonad [Primordial Germ] |
| SRP229336 | DeepH&M: Simultaneous determination of single-CpG hydroxymethylation and methylation levels from enrichment and restriction enzyme sequencing methods [Cerebellum, Cortex] |
| SRP229373 | Novel Isoforms of the Epigenetic Regulator TET1 Differentially Control CNS Synaptic Function, Plasticity, and Cognition [Cultured Hippocampal Neurons] |
| SRP229636 | Inducible cell-specific mouse models for paired epigenetic and transcriptomic studies of microglia and astroglia: Whole Genome oxidative bisulfite sequencing data [Brain] |
| SRP230210 | Whole genome bisulfite sequencing (WGBS) of Tex15 wt, Tex15 ht, and Tex15 ko male germ cells at postnatal day 2.5 [Germ] |
| SRP230428 | Tet2 negatively regulates memory fidelity [CA1 Hippocampal Tissue] |
| SRP233665 | The role of Vitamin C and TET dioxygenases in genome-wide features of regulatory T cells [WGBS] [Spleen And Lymph Nodes] |
| SRP234410 | Whole Genome Bisulfite Sequencing Facilitates Quantitative Analysis of DNA Methylation status in sperm from 2 month old and 18 month old mice [Sperm] |
| SRP234989 | Transcriptomic and epigenetic disruptions in excitatory neurons in Dnmt3a conditional knockout mouse [Brain (Frontal Cortex)] |
| SRP237267 | Maternal DNMT3A-dependent de novo methylation of the zygotic paternal genome inhibits gene expression in the early embryo [Blastocyst, Embryo] |
| SRP239190 | DNMTs Play an Important Role in Maintaining the Pluripotency of Leukemia Inhibitory Factor Dependent Embryonic Stem Cells [ESC] |
| SRP239280 | Structural basis of epigenetic protection of mouse lymphoid progenitor cells by Dnmt1 [Mouse WGBS] [Lin-Bone Marrow Progenitors] |
| SRP239769 | DNA methylome analysis of directly induced oocyte-like cells (DIOLs) [ESC, Fully-grown directly induced oocyte-like, Non-growing directly induced oocyte-like] |
| SRP242576 | Epigenetic changes in Langerhans islets preceding the onset of diabetes [Islet] |
| SRP242612 | Whole Genome Bisulfite Sequencing of CD4+ T cells from mice developmentally exposed to vehicle or TCDD prior to and during influenza infection [CD4+ T cells] |
| SRP244650 | Paradoxical whole genome DNA methylation dynamics of Decitabine in chronic low-dose exposure in mice [Liver, Testes] |
| SRP246238 | Disturbed mitochondrial dynamics in CD8+ TIL reinforce epigenetic programming linked with T cell exhaustion [CD8+ intratumoral T cells (in vivo FACS purified cells)] |
| SRP246664 | Autocrine IL6 activates the STAT3-DNMT axis to silence the TNFa-RIP1 necroptosis pathway to sustain myeloid-derived suppressor cell survival and accumulation [Spleen] |
| SRP246939 | Beta cell-specific CD8+ T cells maintain stem-cell memory-associated epigenetic programs during type 1 diabetes (WGBS) [HAART HIV TN CD8 T cells, Polyclonal Naive CD8 T cell HD, Polyclonal T1D Naive CD8 T cells, Polyclonal TCM CD8 T cells, Polyclonal TEM CD8 T cells, Polyclonal TSCM CD8 T cells, Tetramer+ CD8 T cells, Tetramer+ HAART CD8 T cells, Tetramer+ T1D CD8 T cells] |
| SRP247347 | TET2 promotes anti-tumor immunity by governing G-MDSCs and CD8+ T cell numbers [granulocytic myeloid-derived suppressor cells (G-MDSCs)] |
| SRP250290 | A multivalent signal-transducing model for the DNMT1-mediated maintenance DNA methylation [ES Cells] |
| SRP251304 | Control of Foxp3 induction and maintenance by sequential histone acetylation and DNA demethylation [WGBS] [In vitro induced wild-type regulatory T cells (ascorbic acid treated), In vitro induced wild-type regulatory T cells (control), Wild-type CD4 effector T cells, Wild-type naive CD4 T cells, Wild-type regulatory T cells] |
| SRP252412 | WGBS and RNA-seq of mouse livers and human Hep3B cells [Liver] |
| SRP254051 | Post-implantation developmental defects induced by mtDNA mutation derive from altered DNA methylome in oocytes [Oocyte] |
| SRP254510 | Mus musculus musculus strain:Bl6 Raw sequence reads [Enterocytes] |
| SRP254904 | DNMT3A haploinsufficiency results in behavioral deficits and global epigenomic dysregulation shared across neurodevelopment disorders [Bisulfite-Seq] [Cortex] |
| SRP255391 | NSD1-deposited H3K36me2 directs de novo methylation in the mouse male germline and counteracts Polycomb-associated silencing [Embryo, Sperm] |
| SRP257580 | Altered microRNA expression links IL6 and TNF-induced inflammaging with myeloid malignancy [miR146aKO_LSK_WGBS] [Bone Marrow] |
| SRP257737 | Role of E2F6 in gene expression and DNA methylation during mouse development [Whole Embryos] |
| SRP257778 | Characterization of metabolic patterns in mouse oocytes during meiotic maturation [MII oocytes] |
| SRP258361 | Transgenerational inheritance of obesity correlates with transmission of epigenetic alterations in the Fto gene [BS-seq] [Sperm] |
| SRP258472 | Neuronal activation modulates enhancer activity of genes for excitatory synaptogenesis through de novo DNA methylation [E17 hippocampus] |
| SRP261467 | Epigenetic and chromatin profiling of wild-type and Dnmt3a-deficient B1 and B2 B cells. (methylation) [B1, B2, proB1, proB2] |
| SRP261529 | An activity-mediated transition in transcription in early postnatal neurons [BS-seq] [Cortex] |
| SRP265159 | IGF2R-initiated Proton Rechanneling Dictates an Anti-inflammatory Property in Macrophages [Peritoneal Macrophages] |
| SRP265261 | Cyclosporin A and FGF signaling support the proliferation/survival of mouse primordial germ cell-like cells in vitro [bis-seq] [E9.5 PGC, ESC] |
| SRP265512 | Temporal evolution of cellular heterogeneity during the progression to advanced, AR-negative prostate cancer [RRBS] [Tumor] |
| SRP266415 | Flanking sequence preference modulates de novo DNA methylation in the mouse genome [ESC] |
| SRP266608 | Mouse preimplantation imprinting [WGBS] [Blastocyst, ESC, Kidney] |
| SRP267895 | Multiomics profiling of young and old quiescent skeletal muscle stem cells [aging WGBS] [Skeletal Muscle Stem Cell] |
| SRP267967 | Characterization of universal features of partially methylated domains across tissues and species [Breast Tumor, Lung] |
| SRP270999 | Hoxa10 is a functional positional memory that governs stem cell function in adult skeletal muscle [Masseter, Tibialis Anterior] |
| SRP271091 | Glucocorticoids sensitive progenitor PDGFRa+ cells switching to white adipocytes cause visceral obese via methylation modification of TEAD1 (Bisultite-seq) [Adipose] |
| SRP271469 | Methylation and gene expression data obtained from Dnmt3b+/- peripheral T-cell lymphomas. [Lymph Node] |
| SRP271532 | Formative pluripotent stem cells show features of epiblast cells poised for gastrulation [MethylC fPSCs P10] |
| SRP271992 | Methylation and gene expression data obtained from Dnmt3b+/+, Dnmt3bD/D and Dnmt3bCI/CI MYC induced T-cell lymphomas (MTCLs). [Lymph Node] |
| SRP272852 | Epigenetic reprogramming of airway macrophages drives polarization and inflammation in muco-obstructive lung disease (WGBS_BL) [Lung] |
| SRP273163 | Atg7-dependent autophagy regulates the naive to primed transition by selective Nanog degradation in mouse embryonic stem cells [WGBS] [ESC] |
| SRP273620 | Whole genome bisulfite sequencing of apoptotic and male-differentiated subpopulations of E13.5 wild-type murine male germ cells [Apoptosis-poised (AP) germ, Male-differentiated (MD) germ] |
| SRP278195 | Whole genome bisulfite sequencing analysis to measure the effect of EHMT2 (G9a, Bat8) on DNA methylation in the mouse embryo at 9.5 dpc [Embryo] |
| SRP280273 | Fetal origin of sex-bias brain aging [Fetal Brain, Placenta] |
| SRP281855 | YY1 safeguard multidimensional epigenetic landscape associated with extended pluripotency [EPS] |
| SRP282002 | Sperm epigenetic alterations contribute to inter- and transgenerational effects of paternal exposure to long-term psychological stress via evading offspring embryonic reprogramming [Embryo, Oocyte, Sperm] |
| SRP282126 | MicroRNA-29 is an essential regulator of non-CG methylation during brain maturation [Bisulfite-seq] [Cortex] |
| SRP283863 | Foxp3 enhancers synergize to maximize regulatory T cell suppressive capacity [Bisulfite-Seq] [FACS sorted regulatory T cells (CD4+GFP+)] |
| SRP285138 | Dnmt1 has global de novo methylation activity and is specifically targeted to transposable elements [E3.5 Blastocyst, E6.5 Epiblast, mESC] |
| SRP285604 | Muscle regeneration controlled by a designated DNA dioxygenase (Methylation-Seq) [Hindlimb Skeletal Muscle] |
| SRP286191 | Genome-wide maps of Dnmt1-dependent DNA methylome in adipocytes [Epididymal Adipose] |
| SRP286409 | H3K27me3 shapes DNA methylome by inhibiting UHRF1-mediated H3 ubiquitination [Bisulfite-seq] [E14, HeLa] |
| SRP288034 | DNA methylomes of murine B and T cells from the BLUEPRINT Epigenome project [CD4+CD62L+ T cells, CD43-B cells] |
| SRP288067 | Epigenomic profiles of 4T1 cell line in primary, metastasis site and circulating cell type in xenograft mouse model [Circulating Tumor, Fat Pad Xenograft, Lung Metastasis, Mammary Gland] |
| SRP289001 | Depletion of H3K36me2 recapitulates epigenomic and phenotypic changes induced by the H3.3K36M oncohistone mutation [Embryo] |
| SRP289560 | Whole-genome bisulfite sequencing analysis of Pten's function in regulating cardiomyocyte differentiation [ES-derived cardiomyocytes] |
| SRP291181 | Transgenerational inheritance of epigenetic signatures at CpG islands in mice [ESC] |
| SRP291379 | Dnmt3a deficiency in the skin [Skin] |
| SRP292265 | Cell type-specific transcriptomic and eipgenome analysis of diabetic cardiomyopathy [Heart] |
| SRP292587 | TET deficiency promotes oncogenesis and DNA damage in B cells by increasing the levels of G-quadruplexes and R-loops [WGBS] [Spleen] |
| SRP292755 | KMT2C Loss Promotes Small Cell Lung Cancer Metastasis through DNMT3A-mediated Epigenetic Reprogramming [Liver, Lung] |
| SRP292910 | The effect of NEIL3 on CA1 DNA methylation [Brain] |
| SRP294136 | Unraveling the functional role of DNA demethylation at specific promoters by targeted steric blockage of DNA methyltansferase with CRISPR/dCas9 [NIH-3T3] |
| SRP296451 | WGBS on prospermatogonia at E18.5 [Prospermatogonia (Oct4-GFP positive cells sorted by FACS)] |
| SRP297323 | Base-editor-mediated multiplexed inactivation of DNA methyltransferases reveals essential roles of miRNAs in mouse gastrulation [Epiblast, Extraembryonic Ectoderm, Whole Embryo] |
| SRP297921 | Transcriptional and epigenomic profiling identifies YAP signaling as a key regulator of intestinal epithelium maturation [II] [Small Intestinal Epithelium Derived Organoids] |
| SRP299927 | Methylomes of macrophage-DC progenitors (MDPs), monocytes, common monocyte progenitors (cMoPs), common dendritic cell progenitors (CDPs), plasmacytoid dendritic cells (pDCs), and cDC CD8a+ as well as cDC CD11b+ dendritic cells [CDPs, MDPs, Monocytes, cDC CD11b+, cDC CD8a+, cMoPs, pDCs] |
| SRP300044 | Genome-wide maps of DNA methylome during oocyte aging and its transgenerational inheritance [Hippocampus, M2 oocyte, Sperm] |
| SRP300086 | PDGFRa+ not CD137+ progenitors control visceral obesity via glucocorticoid mediated TEAD1 methylation state [Adipose Tissue] |
| SRP300442 | Disordered N-Terminal DNMT3A Domain Is Required for Mouse Postnatal Development [Cerebral Cortex, Cortical Neuron Nuclei] |
| SRP301916 | Constitutive loss of DNMT3A causes morbid obesity through misregulation of adipogenesis [Adipose] |
| SRP302177 | Whole genome bisulfite sequencing of E13.0 and E13.5 Tex14 mutant, heterozygote and wild-type murine female germ cells [Germ] |
| SRP302195 | Whole genome bisulfite sequencing of sstr2 knockout mice [Gastric] |
| SRP302337 | ZFP57 dictates allelic expression switch of target imprinted genes [Total Embryo] |
| SRP305480 | 5-hydroxymethylcytosine is required for terminal differentiation of Purkinje neurons [Cerebellum] |
| SRP307526 | DNA methylation regulates haematopoietic development [AGM, Bone Marrow, Fetal Liver] |
| SRP308565 | Methylomes of young and aged LT-HSCs [Primary Murine Hematopoietic Stem Cell] |
| SRP308731 | Loss of SETD1B results in the redistribution of genomic H3K4me3 in the oocyte [PBAT] [Germinal Vesicle Oocytes] |
| SRP309189 | Genome-wide methylation analysis of murine innate lymphoid cells [Lymph Node] |
| SRP309253 | In Vitro Reconstitution of the Whole Male Germ-Cell Development from Mouse Pluripotent Stem Cells [PBAT] [Germ cells derived from ESCs] |
| SRP309373 | RNA-seq, ATAC-seq, WGBS, and CUT&RUN of urothelial cells isolated from Naive, Resolved, and Sensitized C3H/HeN mice [urothelial stem cells (USCs)] |
| SRP309644 | DNMT3B supports meso-endoderm differentiation from mouse embryonic stem cells [WGBS] [ES-E14, ES-E14 derived EpiSC, EpiLC-derived ME] |
| SRP309709 | Epigenetic integrity of paternal imprints enhances the developmental potential of androgenetic haploid embryonic stem cells [mESCs] |
| SRP310260 | Mouse totipotent stem cells captured and maintained through spliceosomal repression [mESC cultured in SLP medium, mESC cultured in serum/lif medium] |
| SRP310416 | Dnmt3a-Mutant Hematopoietic Stem cells are resistant to inflammatory stress [Bone Marrow] |
| SRP311975 | A cis-acting mechanism mediates trancriptional memory at Polycomb target genes in mammals [WGBS] [C-Myc-Immortalized Mouse Embryonic Fibroblasts] |
| SRP312013 | Maintenance DNA methylation in pre-meiotic germ cells regulates meiotic prophase by facilitating homologous chromosome pairing [Male Germ] |
| SRP312491 | Placenta and fetal brain share a neurodevelopmental disorder DNA methylation profile in a mouse model of prenatal PCB exposure [WGBS] [Brain, Placenta] |
| SRP312798 | Diverse epigenetic mechanisms maintain parental imprints within the embryonic and extraembryonic lineages [ExE (Extraembryonic Ectoderm)] |
| SRP313361 | Whole Genome Bisulfite Sequencing of miR-143 knock-out mice liver |
| SRP313387 | Regnase-1 suppresses TCF-1+ precursor exhausted T cell formation to limit CAR T cell responses against ALL [WGBS] [Regnase-1-deficient CAR T, Wt Car T] |
| SRP313733 | Whole genome bisulfite sequencing of young and old satellite cells [Primary Myoblasts] |
| SRP314467 | Postnatal expansion of the lymph node stromal cell pool towards reticular and CD34+ stromal cell subsets [WGBS] [Gut-Draining Mesenteric Lymph Node, Skin-Draining Mesenteric Lymph Node] |
| SRP315002 | Functional and epigenetic phenotypes of humans and mice with DNMT3A overgrowth syndrome [Whole Bone Marrow] |
| SRP318894 | RNA-seq, WGBS, 5hmC-Seal, and ATAC-seq data about TET proteins and skeletal development (WGBS) [Primary] |
| SRP319090 | Whole genome bisulfite sequencing analysis to examine the effect of the iron chelator deferoxamine on DNA methylation levels in 3T3-L1 pre-adipocyte cells [Preadipocyte Cell Line] |
| SRP319425 | Whole-genome bisulfite sequencing anlaysis of in vitro fertilized mouse hybrid blastocysts [Blastocyst] |
| SRP321573 | Conservation and divergence of DNA methylation patterns and functions in vertebrates [Primary Dermal Fibroblasts, Psoas Muscle] |
| SRP321876 | Genetic variation at mouse and human ribosomal DNA influences associated epigenetic states [Blood, Kidney] |
| SRP322748 | Club cells employ regeneration mechanisms during lung tumorigenesis [Lung] |
| SRP323244 | Tet enzymes are required for mammalian embryonic hematopoiesis [Endothelial, Hematopoietic Stem And Progenitor] |
| SRP325428 | Systematic profiling of DNMT3A variants reveals protein instability mediated by the DCAF8 E3 ubiquitin ligase adaptor [Cell Line, ESC] |
| SRP327113 | DNA methylation changes of heart tissue in mouse with alcoholic cardiomyopathy [Heart] |
| SRP329327 | HypoSUMOylation in embryonic stem cells generates head-and-trunk embryo-like structure [Methyl-seq] [ES Cells] |
| SRP329752 | Whole genome bisulfite sequencing (WGBS) analysis of murine splenic DC subtypes [Spleen] |
| SRP329853 | Mouse methylome and transcriptome of three brain tissues in aging [Hippocampus, Striatum, Substantia Nigra] |
| SRP331841 | DNA Methylation Status in Mouse Liver Affected by Maternal High-fat, High-sucrose diet [Liver] |
| SRP336016 | Salt induces hepatic inflammatory response through epigenetic modulation of SIRT3 [Bisulfite-seq] [Liver] |
| SRP336168 | Tet2 deficiency altered hematopoietic stem and progenitor cells ageing process [LSK] |
| SRP336573 | Perturbation of TET2 condensation induces genome-wide promiscuous DNA hypomethylation and curtails leukemia cell growth [ESCs (mESCs), Leukemia Cell Line] |
| SRP336725 | Histone H3K36me2 and H3K36me3 form a chromatin platform essential for DNMT3A-dependent DNA methylation in mouse oocytes [Oocyte] |
| SRP336812 | Differential regulation of mouse hippocampal gene expression sex differences by chromosomal content and gonadal sex: Whole Genome OXBS-Seq Data [Hippocampus] |
| SRP337056 | The DNMT1 inhibitor GSK-3484862 mediates global demethylation in murine embryonic stem cells [undifferentiated ESCs] |
| SRP337411 | Examining age-dependent DNA methylation patterns and gene expression in the male and female mouse hippocampus [Dorsal Hippocampus] |
| SRP339235 | 9sCa: MSL2 is an allelic dosage sensor in mammals [Neural Progenitor] |
| SRP339236 | BlCa: MSL2 is an allelic dosage sensor in mammals [Neural Progenitor] |
| SRP339237 | CaBl: MSL2 is an allelic dosage sensor in mammals [Neural Progenitor] |
| SRP339793 | Somatic Dnmt3a deletion in murine hematopoietic cells [B-cells, CMP, GMP, Lineage negative Kit positive Sca1 positive, MEP, Myeloid, T-cells, Whole Bone Marrow] |
| SRP340739 | Loss of TET reprograms Wnt signaling through impaired demethylation to promote lung cancer development [Lung] |
| SRP341070 | Promoter repression and 3D-restructuring resolves divergent developmental gene expression in TADs [WGBS] [ESC, Limb] |
| SRP342398 | Next Generation Sequencing Facilitates Quantitative Analysis of ApoE-/-/SAHHWT, ApoE-/-/SAHH+/- mice and ApoE-/-/SAHH+/- +Betaine mice [WGBS] [Vascular] |
| SRP342541 | Maternal SMCHD1 controls both imprinted Xist expression and imprinted X chromosome inactivation [Embryo] |
| SRP342588 | Whole genome bisulfite sequencing of 3T3-L1 preadipocytes and adipocytes [Embryo] |
| SRP342595 | Dynamics of DNA hydroxymethylation and methylation during mouse embryonic and germline development [Epiblast] |
| SRP342917 | Rat and mouse imprintomes (allele-specific DNA methylomes) [EPC, Epiblast] |
| SRP342995 | H3K36 Dimethylation Shapes the Epigenetic Interaction Landscape by Directing Repressive Chromatin Modifications in Embryonic Stem Cells [C57BL/6 x 129S4/SvJae F1 embryo-derived ESCs] |
| SRP348783 | Sex-specific epigenetic development in the mouse hypothalamic arcuate nucleus pinpoints human genomic regions associated with body mass index [Glia, Neuron] |
| SRP349681 | The distinct effects of MEK and GSK3 inhibition upon the DNA methylome and transcriptome of mouse embryonic stem cells [ESC] |
| SRP350023 | Vitamin C deficiency causes cell type-specific epigenetic reprogramming and acute tubular necrosis [Kidney] |
| SRP350997 | GLP is critical for oogenesis exhibiting a G9A-independent role in transcriptional repression [Oocyte] |
| SRP351062 | Whole genome DNA methylation profiling of mouse nucleus accumbens Drd2 medium spiny neurons by using two independent library preparation methods [Nucleus Accumbens] |
| SRP351503 | Cell-type specific DNA methylome signatures reveal epigenetic mechanisms for neuronal diversity and neurodevelopmental disorder [Cerebellum, Cortex] |
| SRP353039 | WGBS of control and DAC-treated CT26 cells. [Cell Line] |
| SRP353283 | Cancer stem cells, not bulk tumor cells, determine mechanisms of resistance to SMO inhibitors |
| SRP354658 | Global DNA methylation analysis of cancer-associated fibroblasts reveals extensive epigenetic rewiring linked with RUNX1 upregulation in breast cancer stroma [WGBS] [Breast Tumor, Normal Mammary Fat Pad] |
| SRP355808 | Somatic Dnmt3a deletion in murine hematopoietic cells [B-cells, CMP, GMP, KLS, MEP, Myeloid, T-cells, WBM] |
| SRP355886 | Whole-genome bisulfite sequencing (WGBS) of stressed and nonstressed breast tumor in mice [Breast Tumor] |
| SRP356163 | PU.1-dependent enhancer inhibition separates clonal hematopoiesis from malignant transformation (oxBS-Seq) [Bone Marrow] |
| SRP357383 | DNA methylation landscape and transcriptome of tumor-associated macrophages reveals pathways, transcription factors, and prognostic value relevant for breast cancer patients [methylation] [Bone Marrow, Breast Cancer, Normal Mammary Fat Pad] |
| SRP359332 | Donor T-cell DNMT3a regulates alloreactivity in murine models of hematopoietic stem cell transplantation [WGBS] [Primary] |
| SRP360183 | Whole genome bisulfite sequencing of WT and Dnmt3a KO HSCs following chronic infection [murine Hematpoietic stem cell] |
| SRP360425 | Role of Dppa3 during primordial germ cell development I [Primordial Germ] |
| SRP361168 | Suppression of colorectal cancer by ketogenic diet and beta-hydroxybutyrate (Bisulfite Sequencing Dataset) [Colon] |
| SRP362787 | Genome-wide bisulfite sequencing (GWBS) and RNA-seq in hippocampus of Neil1- and Neil2 deficient mice [Hippocampus] |
| SRP363476 | Dynamic antagonism between key repressive pathways maintains the placental epigenome (WGBS) [Trophoblast Stem Cell] |
| SRP363630 | Modeling methyl-sensitive transcription factor motifs with an expanded epigenetic alphabet [mESC] |
| SRP364004 | Transcriptional regulation of the thymus master regulator Foxn1 [WGBS] [Lung, Thymus] |
| SRP366957 | Single substitution in H3.3G34 alters DNMT3A recruitment to cause progressive neurodegeneration [WGBS] [Cortex] |
| SRP367185 | Spatial organization of H3K9me2/3-marked heterochromatin is redundantly maintained by either the H3K9 or H3K27 methylation pathway [MethylC-seq] [iMEFs] |
| SRP367537 | Whole-genome bisulfite sequencing of Dnmt1/3a/3b triple knockout (TKO) embryonic stem cells with or without expression of exogenous Dnmt1 before and after cell differentiation [ESC] |
| SRP367683 | TET2 and TET3 loss disrupts small intestine differentiation and homeostasis [Bisulfite-seq] [Small Intestine] |
| SRP367742 | HIV Tat and cocaine interactively alter genome-wide DNA methylation and gene expression and exacerbate learning and memory impairments [Bisulfite-seq] [Brain Hippocampus] |
| SRP367910 | Inflammatory exposure drives permanent impairment of hematopoietic stem cell self-renewal activity and accelerated aging [Lin(-) c-kit(+) sca-1(+) CD150(+) CD48(-) CD34(-)] |
| SRP368317 | Genome-wide methylation analysis of murine CD4+ Th1, Th2, and Th17 cells [Spleen Lymph Node] |
| SRP370019 | Disturbance on DNA methylation and gene expression levels of mouse plasma leukocytes by low-dose ionizing radiation [Plasma Leukocyte] |
| SRP371705 | MethylC-Seq: Intestinal stem cell aging signature reveals a reprogramming strategy to enhance regenerative potential [intestinal stem cell (ISC)] |
| SRP371845 | Raw WGBS reads of mice zygotes [Oocyte, Sperm, Zygotes From The Control, zygotes from the Tet1, zygotes from the Tet2] |
| SRP372616 | Global DNA methylation analysis of mouse totipotent potential stem cells, extended pluripotent stem cells and mouse embryonic stem cells [ESC, Extended Pluripotent Stem Cell, Totipotent Potential Stem Cell] |
| SRP373182 | TRIM28 establishes skeletal stem cell identity and safeguards skeletogenesis (WGBS) [Rib Caritilage] |
| SRP375715 | Role of Dppa3 during primordial germ cell development II [Oocyte] |
| SRP376172 | DNA sequence determines epigenetic bistability at imprinting control regions [WGBS] [ESC] |
| SRP376633 | H3K36 methylation maintains cell identity by regulating opposing lineage programs [Reprogramming Intermediate] |
| SRP376940 | Temporally-Divergent Regulatory Mechanisms Govern Neuronal Diversification and Maturation in the Neocortex [WGBS] [Somatosensory Cortex And Motor Cortex] |
| SRP377658 | Genome-wide assessment of DNA methylation alterations induced by superovulation, sexual immaturity and in vitro follicle growth in mouse blastocysts [Blastocyst] |
| SRP378380 | WGBS data of enhanced addictive bahavior in male offspring [Brain-Nucleus Accumbens] |
| SRP379742 | The intrinsic and extrinsic effects of Tet proteins during gastrulation [Sorted Ctrl1 cells from E8.5 mixed chimeras, Sorted Ctrl2 cells from E8.5 mixed chimeras, Sorted TKO1 cells from E8.5 mixed chimeras, Sorted TKO2 cells from E8.5 mixed chimeras] |
| SRP381882 | In vivo loss of TET2 and TET2 results in aberrant differentiation and homeostasis in the small intestine [Colon Epithelial] |
| SRP384348 | Evidence that direct inhibition of transcription factor binding is the prevailing mode of gene and repeat repression by DNA methylation [WGBS-Seq] [Ebryonic Stem Cell, Embryonic Kidney, Ngn2 neurons] |
| SRP387245 | Differences in DNA methylation of HAMP in blood cells predicts the development of type 2 diabetes [WGBS] [Liver] |
| SRP388596 | Decitabine-induced T cell remodeling facilitates a high antitumor response to PD-1 blockade therapy by promoting the expansion and effector function of CD8+ progenitor exhausted T cells [Spleen] |
| SRP388748 | Transcriptional and epigenetic reprogramming mediated by chronic IL1ß exposure drives self-renewal ability and myeloid priming in TET2 deficient stem and progenitor cells [Bisulfite-Seq] [Bone Marrow] |
| SRP393350 | Whole genome enzymatic methyl-seq of A20 mouse cells using a novel TETact activation of CD4 [A20 B cell lymphoma cell line] |
| SRP393405 | scNMT-seq of the adult NSC lineage - MAB-seq [Ventricular-Subventricular Zone] |
| SRP393949 | CDCA7-associated global aberranDNA hypomethylation translates to localized, tissue-specific transcriptional responses [WGBS] [Spleen] |
| SRP395725 | Tet2 and Tet3 mediated active cytosine hydroxymethylation in Six2 progenitor cells is critical for nephron progenitor differentiation and nephron endowment [Nephron Progenitor] |
| SRP395892 | DNA dioxygenases Tet2/3 control epithelial differentiation (bisulfite-seq) [Hair Matrix Keratinocytes] |
| SRP396119 | NSD1 deposits Histone H3 lysine 36 dimethylation to pattern non-CG DNA methylation in neurons [WGBS in vitro] [Cultured Cortical Neurons] |
| SRP396130 | NSD1 deposits Histone H3 lysine 36 dimethylation to pattern non-CG DNA methylation in neurons [WGBS in vivo] [Cerebral Cortex] |
| SRP396513 | Rockfish: Detection of 5mC DNA Modifications Using Raw Nanopore Signal [ESC, Purified Cardiomyocyte] |
| SRP397149 | Basal cell extrusion primes pluripotent cells for differentiation [Embryo] |
| SRP397538 | Tet2 regulates Sin3a recruitment at active enhancers in embryonic stem cells [ESC] |
| SRP398423 | TET2 lesions enhance the aggressiveness of CEBPA-mutant AML by rebalancing GATA2 expression [WGBS] [AML blasts from bone marrow] |
| SRP398560 | Whole-genome bisulfite sequencing and histone 3.3 ChIP-seq of microdissected developing mouse lens [Lens] |
| SRP398698 | Prenatal exposure to benzo[a]pyrene depletes ovarian reserve and masculinizes embryonic ovarian germ cell transcriptome transgenerationally II [Embryonic Gonad] |
| SRP398703 | Prenatal exposure to benzo[a]pyrene depletes ovarian reserve and masculinizes embryonic ovarian germ cell transcriptome transgenerationally I [Embryonic Gonad] |
| SRP399252 | p16 epimutation modulates the tumor microenvironment and promotes malignancy of Apc-mutant colon cancer [Embryonic Fibroblast] |
| SRP399723 | Zmym2 is essential for methylation of germline genes and active transposons in embryogenesis [WGBS-seq] [Whole Embryo] |
| SRP400264 | WGBS WT J1 ESC at D3 of EpiLC differentiation [ESCs (murine)] |
| SRP400320 | Whole genome bisulfite sequencing (WGBS) and RNA-sequencing of preadipocytes from iWAT [iWAT] |
| SRP400331 | DNA methyltransferase inhibition induces dynamic gene expression changes in lung CD4+ T cells of neonatal mice with E. coli pneumonia [RRBS] [Lung] |
| SRP401089 | Dual gene activating and repressive functions of TET1 in germ layer lineage bifurcation distinguished by genomic context and dependence on 5-methylcytosine oxidation [oxWGBS] [mESC B6129S6F1 Tet1, mESC B6129S6F1 Tet1 CRISPR HDR] |
| SRP403116 | Precision pharmacological reversal of strain-specific diet-induced metabolic syndrome in mice informed by epigenetic and transcriptional regulation [Liver] |
| SRP404930 | LN-stem, tumor stem, tumor terminally differentiated CD8 T cells from human kidney cancer [LN, PBMC, Spleen, TDLN, Tumor] |
| SRP405758 | Comparative analysis of epigenomic evolution in mammals [Liver, Skeleton Muscle] |
| SRP405928 | Optimized bisulfite sequencing reveals the lack of 5-methylcytosine in mammalian mitochondrial DNA [WGBS] [Brain, Breast Cancer, ESC, Embryonic Kidney, Hepatocarcinoma, Lung Adenocarcinoma, Melanoma, Neuroblastoma, Platelet] |
| SRP407097 | Sex Chromosomes and Sex Phenotype Contribute to Biased DNA Methylation in Mouse Liver [Liver] |
| SRP410496 | Whole genome bisulfite sequencing and Infinium Mouse Methylation BeadChip using fresh and fresh-frozen mouse epidermis (WGBS) [Epidermis] |
| SRP412252 | Epigenetic changes in food induced anaphylaxis animal model after immunotherapy. [Lymph Node] |
| SRP413488 | Methylation state of latent and proliferative metastatic tumor cells [Lung] |
| SRP414189 | TET activity propagates transcriptional memory through embryonic dormancy [WGBS] [ESC] |
| SRP417057 | Whole-genome bisulfite sequencing analysis for intestinal budding organoids derived from induced or tissue-derived intestinal stem cells, and for mouse embryonic fibroblasts [Embryo, Intestinal Crypt] |
| SRP417480 | Inducible disruption of Tet genes results in myeloid malignancy, readthrough transcription, and a heterochromatin-to-euchromatin switch [WGBS] [Bone Marrow] |
| SRP418871 | Dynamic DNA methylation turnover at the exit of pluripotency epigenetically primes gene regulatory elements for hematopoietic lineage specification [WGBS] [ESC, EpiLC] |
| SRP421061 | DNA methylation in the mouse cochlea promotes maturation of supporting cells and contributes to the failure of hair cell regeneration [Inner Ear Cochlea] |
| SRP422554 | Predicting age in single cells and low coverage DNA methylation data [scBS] [Whole Blood] |
| SRP422816 | Distinct disease mutations in DNMT3A result in a spectrum of behavioral, epigenetic, and transcriptional disruptions [Cortex] |
| SRP423445 | Ultrafast Bisulfite Sequencing for Efficient and Accurate 5-Methylcytosine Detection in DNA and RNA [Plasma, Stem Cell, mESC] |
| SRP424820 | Durable and efficient gene silencing in vivo by hit-and-run epigenome editing [WGMS] [Liver] |
| SRP425083 | T regulatory cells epigenetic changes in food induced anaphylaxis animal model after immunotherapy. [Spleen] |
| SRP425335 | Epigenetic evolution of the Ly49 gene family [Bisulfite-Seq] [Spleen] |
| SRP426653 | Stem Cell Activity-Coupled Suppression of Endogenous Retrovirus Governs Adult Tissue Regeneration [WGBS] [Skin] |
| SRP431160 | Whole genome bisulfite-seq analysis of control and Dnmt3a conditional knockout (cKO) retinal ganglion cells at 2 days post optic nerve crush [Retina] |
| SRP431846 | Histone methylation mediated by NSD1 is required for the establishment and maintenance of neuronal identities [WGBS] [Somatosensory Cortex] |
| SRP432324 | Macrophage recipient WGBS data: Donors infected with Porphyromonas gingivali (WDPg) or sham-infected (WD) and fed a western diet (WD) [Elicited Macrophages] |
| SRP433931 | Prenatal exposure to benzo[a]pyrene depletes ovarian reserve and masculinizes embryonic ovarian germ cell transcriptome transgenerationally [Bisulfite-Seq] [Embryonic Gonad] |
| SRP435424 | Genome-wide methylated CpG status in WT and IRF8KO microglia [WGBS] [FACS-sorted microglia] |
| SRP435461 | Cell-specific and shared regulatory elements control a multi-gene locus active in mammary and salivary glands [Bisulfite-seq] [Liver, Mammary Gland] |
| SRP440315 | Transcriptomic and methylomic analyses of liver tissue in nonalcoholic steatohepatitis [Bisulfite-Seq] [Liver] |
| SRP441169 | HDAC6 deacetylates IDH1 to regulate the homeostasis of hematopoietic stem/progenitor cells [WGBS-seq] [Bone Marrow] |
| SRP447137 | Single cell methylation, RNA, and ATAC sequencing of brain tissue in inbred mouse strains [Brain] |
| SRP447781 | GEO accession GSE236722 is currently private and is scheduled to be released on Jul 06, 2025. [Cell Line] |
| SRP450385 | Catalytic dependent and independent roles of Tet3 in activation of ectodermal and silencing of mesodermal programs during neuroectoderm specification [Neuroectoderm] |
| SRP451433 | Combinational effect of the ADD domains of DNMT3A and DNMT3L on DNA methylation landscapes in mouse germ cells [WGBS] [Fully Grown Oocyte, Sperm] |
| SRP454736 | Sperm DNA methylation defects in a new mouse model of the 5,10-methylenetetrahydrofolate reductase 677C>T variant and correction with moderate dose folic acid supplementation. [Sperm] |
| SRP455338 | Durable and efficient gene silencing in vivo by hit-and-run epigenome editing [WGMS_invitro_revision] [Liver] |
| SRP456835 | DNMT3A Addback [Bone Marrow] |
| SRP458075 | DNA methylation shapes the Polycomb landscape during the transition from naïve-to-primed pluripotency [ESC] |
| SRP460843 | Whole genome bisulfite sequencing (WGBS) of intestinal organoids from mice with graft-versus-host disease [Intestinal] |
| SRP461642 | Whole genome bisulfite sequencing identifies stage- and subtype-specific DNA methylation signatures in pancreatic cancer [Normal Pancreatic Ductal Mouse Organoid, Normal Pancreatic Ductal Patient-Derived Organoid, PanIN mouse organoid, Pancreatic Ductal Adenocarcinoma Mouse Organoid, Pancreatic Ductal Adenocarcinoma Patient-Derived Organoid] |
| SRP462875 | Mus musculus Genome sequencing and assembly [Liver] |
| SRP462989 | Spatio-temporal X-linked gene reactivation in the mouse germline reveals site-specific retention of epigenetic silencing [WGBS] [Embryo] |
| SRP463129 | Genome-wide DNA methylation pattern changes in ESC, and EPSC after treated with T09 [EPSC, EPSC with T09, ESC, NrESC] |
| SRP464133 | Increased global DNA methylation disrupts skeletal muscle homeostasis, promotes age-related decline in muscle function, and reduces muscle plasticity [Skeletal Muscle Iibialis Anterior] |
| SRP466337 | Astrocyte-produced HB-EGF limits autoimmune CNS pathology [WGBS] [Brain And Spinal Cord] |
| SRP469813 | Whole Genome Bisulphite Sequencing of undifferentiated and differentiated NIH3T3L1 [Fibroblast] |
| SRP469968 | FTDC1/2, oocyte-specific cofactors of DNMT1 required for epigenetic regulation and embryonic development (Bisulfite-Seq) [Blastula, Four, Oocyte] |
| SRP471571 | Histone methyltransferase SETDB1 silenced SINE B2 retrotransposons and maintained mitotic cell cycle of neural progenitor cells (WGBS) [Neural Progenitor Cells From Ganglionic Eminence] |
| SRP472167 | FoxA1/2-dependent epigenomic reprogramming drives lineage switching in lung adenocarcinoma [Bisulfite-Seq] [Lung, Lung Tumors] |
| SRP473050 | Source cell-type epigenetic memory persists in induced pluripotent cells but is lost in subsequently derived germline cells [Embryonic Fibroblasts, Inner Cell Mass, Primordial Germ, Primordial Germ Cell Like, Spermatogonial Stem Cell, Tail Tip Fibroblasts] |
| SRP473623 | Mus musculus strain:C57Bl/6J Raw sequence reads [Placenta, Primordial Germ] |
| SRP474397 | De novo Assembly and Delivery of Synthetic Megabase-Scale Human DNA into Mouse Early Embryos [Early Embryo] |
| SRP474495 | Landscape of TFs binding in mouse early embryos [Bisulfite-seq] [Embryo] |
| SRP474956 | Transcriptomic and epigenomic profiling of Tet TKO neural stem cells to study NSC specification and multipotency [ESC, Neural Stem Cell] |
| SRP475142 | DNA methylation memory of acinar-ductal transition state altering Kras-downstream Pi3k and Rho GTPase signaling [Pancreas] |
| SRP476050 | Cohesin trajectories shape the epigenetic and transcriptional landscape of clustered Protocadherin genes for single neuron identities [Olfactory Epithilium] |
| SRP477968 | Extraembryonic gut endoderm cells undergo programmed cell death elimination during development (WGBS) [Extraembryonic endoderm (distal), Extraembryonic endoderm (proximal), Hindgut Endoderm, Midgut Endoderm, Yolk Sac Endoderm] |
| SRP478001 | Global epigenetic stability of liver-resident invariant natural killer T cells in response to cues capable of inducing transcriptional re-programming [Liver] |
| SRP480077 | Remodeling the step-wise mouse placental development by using totipotent blastomere-like stem cells [WGBS] [mTELCs induced from mTBLCs, mTELSC cultured in TX medium, mTELSC-TO cultured in TO medium] |
| SRP482520 | OGT prevents DNA demethylation and suppresses the expression of transposable elements in heterochromatin by restraining TET activity genome-wide (WGBS) [mESC] |
| SRP484966 | Antisense transcription can induce expression memory via stable promoter repression [XX ESCs] |
| SRP486307 | An unbiased genome-wide screen reveals that mouse metastable epialleles are extremely rare [Kidney, Liver] |
| SRP487504 | Sex-Specific DNA Methylation and Gene Expression Changes in Mouse Placentas After Early Preimplantation Alcohol Exposure[Methyl-Seq] [Placenta] |
| SRP487827 | Endocrine islet beta-cell subtypes with differential function are derived from biochemically distinct embryonic endocrine islet progenitors that are regulated by maternal nutrients [endocrine islets postnatal day-2 female mice, endocrine islets postnatal day-2 male mice, endocrine islets postnatal day-60 female mice, endocrine islets postnatal day-60 male mice] |
| SRP490016 | Methylation status of CD4+ and CD11b+ cells from Dnmt3a+/+ or Dnmt3aR878/+ mice [Spleen] |
| SRP491334 | CxxC-finger protein 1 regulates Treg fragility associated with H3K4me3 breadth [Treg] |
| SRP496661 | Employing multi-omics analyses to understand changes during kidney development in perinatal Interleukin-6 animal model [Kidney] |
| SRP497496 | Increased global DNA methylation by Dnmt3a disrupts skeletal muscle homeostasis, promotes age-related muscle atrophy, and reduces muscle metabolic elasticity [Skeletal Muscle Gastrocnemius] |
| SRP497502 | The chromatin accessibility landscape of mouse oocytes during configuration transition [BS-seq] [Oocyte] |
| SRP498773 | GEO accession GSE262843 is currently private and is scheduled to be released on Jul 01, 2025. [Lymph Node, Tumor] |
| SRP500539 | Maternal obesity induces the meiotic defects and epigenetic alterations during fetal oocyte development [BiSulfite-seq] [Ovary] |
| SRP501862 | Conserved epigenetic hallmarks of T-cell aging during immunity and malignancy [Blood] |
| SRP503857 | Mutant IDH1 inhibition induces reverse transcriptase and dsDNA sensing to activate tumor immunity [mouse WGBS] [Cholangiocarcinoma, Liver] |
| SRP505989 | Transgenerational inheritance of diabetes susceptibility in male offspring with maternal hyperandrogenism [WGBS] [Sperm] |
| SRP506266 | Novel enzyme-based reduced representation method for DNA methylation profiling with low inputs [Tconv cells (CD4+Foxp3YFP-), Tconvcells(CD4+Foxp3YFP-), Treg cells (CD4+CD25+Foxp3-YFP+), Tregcells(CD4+CD25+Foxp3-YFP+)] |
| SRP511326 | CXXC5 stabilizes DNA methylation patterns in mouse embryonic stem cells [Bisulfite-Seq] [mESC] |
| SRP511364 | Maternal loss-of-function of Nlrp2 results in failure of epigenetic reprogramming in mouse oocytes [Ovary] |
| SRP512476 | The role of the TET-dependent DNA demethylation pathway in photoreceptor development and pathology [Retina] |
| SRP521262 | Whole genome bisulfite sequencing of mice treated by mitochondrial transplantation [Brain, Muscle] |
| SRP521804 | Dnmt3a Controls Hematopoietic Stem Cells via DNA Methylation-Independent Regulation of Telomeres [BM, KSL] |
| SRP522281 | Early Moderate Prenatal Alcohol Exposure and Maternal Diet Impact Offspring DNA Methylation Across Species [Brain, Liver] |
| SRP525939 | Non-CG DNA methylation and MeCP2 stabilize repeated tuning of long genes that distinguish closely related neuron types [WGBS] [Cortex] |
| SRP526206 | Tet3 regulates terminal cell differentiation at the metabolic level [E18.5 isolated villi from intestinal epithelium] |
| SRP526448 | Epigenetic regulators of clonal hematopoiesis control CD8 T cell stemness during immunotherapy [Bisulfite-Seq] [Spleen] |
| SRP531904 | The DNA demethylase TET1 modifies the impact of maternal folic acid status on embryonic brain development [Embryonic Brain] |
| SRP534659 | Erosion of somatic tissue identity with loss of the X-linked intellectual disability factor KDM5C [ESC, Extended Epiblast-Like] |
| SRP540228 | The spatial zonation of the placental vasculature is specified by epigenetic mechanisms [WGBS] [Placenta] |
| SRP540934 | Accumulation of epigenetic noise in the corneal epithelium during aging [Cornea] |
| SRP544973 | DNMT3A-dependent DNA methylation shapes the endothelial enhancer landscape [WGBS] [Lung] |
| SRP545322 | DNMT3A-dependent DNA methylation shapes the endothelial enhancer landscape [WGBS II] [Lung] |
| SRP550944 | Whole genome bisulfite sequencing of nicotine-exposed sperm reveals differences in global DNA methylation levels, which would partially reverse following cessation [Sperm] |
| SRP551216 | Transcriptome and DNA methylome in oocytes exposed to gestational diabetes [Ovary] |
| SRP552104 | Comparision of Differential methylation between Control and mutant Dnmt3a [KSL] |
| SRP555757 | Developmental exposure to air pollution particulates increases asthma severity, alters the RNA transcriptome, and DNA methylation in female adult progeny [WGMS] [Lung (RML)] |
| SRP560126 | Active DNA demethylation is upstream of rod photoreceptor fate determination and required for retinal development [Bisulfite-Seq] [Whole Retina] |
| SRP564359 | PKM2 mediated mitochondrial reprogramming supports enhanced effector functions in CD8 T cells increasing the anti-tumor efficacy of anti-PD1 therapy [WGBS] [C57BL/6J OT1 mice] |
| SRP568175 | DAXX is required for spermatogenesis and governs the silencing of LINE1 during meiosis in male [Testis] |
| SRP570719 | Chronic morphine treatment leads to a global DNA hypomethylation via active and passive demethylation mechanisms in mESCs [mESCs] |
| SRP571561 | Hypercapnia induces long-term DNA methylation changes in skeletal muscle [Skeletal Muscle] |