Mouse methylome studies ERP107948 Track Settings
Study title: DEEP data release for IHEC/EpiRR 2018 data freeze.SRA: ERP107948 GEO: not foundPubmed: not found
Experiment
Label
Methylation
Coverage
HMRs
HMR size
AMRs
AMR size
PMDs
PMD size
Conversion
Details
ERX2579828 Fibroblast
0.709
5.0
29718
1340.0
186
1026.3
295
25662.6
0.987
title: Illumina HiSeq 2000 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C0003873", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:06Z", "External_Id": "SAMEA1064227", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:06Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "synovial fluid", "ORIGIN_SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/UBERON_0001090", "PASSAGE_IF_EXPANDED": "3", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000057", "Submitter_Id": "53_Mf08_LPFi_RA", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "Anja Hillmann, Pap Lab", "biomaterial_type": "Primary Cell Culture", "cell_type": "fibroblast", "common_name": "house mouse", "culture_conditions": "10% CO2, DMEM+10%FCS+P/S", "disease": "rheumatoid arthritis", "donor_age": "13", "donor_health_status": "healthy", "donor_id": "53_Mf08", "sex": "female", "markers": "isolated from the synovium", "phenotype": "rheumatoid arthritis", "sample_name": "53_Mf08_LPFi_RA", "scientific_name": "Mus musculus"}
ERX2579829 Fibroblast
0.696
2.7
26542
1536.2
101
1036.8
88
59098.8
0.985
title: Illumina HiSeq 2000 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C0003873", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:06Z", "External_Id": "SAMEA1064227", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:06Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "synovial fluid", "ORIGIN_SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/UBERON_0001090", "PASSAGE_IF_EXPANDED": "3", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000057", "Submitter_Id": "53_Mf08_LPFi_RA", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "Anja Hillmann, Pap Lab", "biomaterial_type": "Primary Cell Culture", "cell_type": "fibroblast", "common_name": "house mouse", "culture_conditions": "10% CO2, DMEM+10%FCS+P/S", "disease": "rheumatoid arthritis", "donor_age": "13", "donor_health_status": "healthy", "donor_id": "53_Mf08", "sex": "female", "markers": "isolated from the synovium", "phenotype": "rheumatoid arthritis", "sample_name": "53_Mf08_LPFi_RA", "scientific_name": "Mus musculus"}
ERX2579832 Fibroblast
0.738
6.5
32668
1371.7
71
795.5
599
13266.3
0.996
title: Illumina HiSeq 2000 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C0003873", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:06Z", "External_Id": "SAMEA1064227", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:06Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "synovial fluid", "ORIGIN_SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/UBERON_0001090", "PASSAGE_IF_EXPANDED": "3", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000057", "Submitter_Id": "53_Mf08_LPFi_RA", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "Anja Hillmann, Pap Lab", "biomaterial_type": "Primary Cell Culture", "cell_type": "fibroblast", "common_name": "house mouse", "culture_conditions": "10% CO2, DMEM+10%FCS+P/S", "disease": "rheumatoid arthritis", "donor_age": "13", "donor_health_status": "healthy", "donor_id": "53_Mf08", "sex": "female", "markers": "isolated from the synovium", "phenotype": "rheumatoid arthritis", "sample_name": "53_Mf08_LPFi_RA", "scientific_name": "Mus musculus"}
ERX2579833 Fibroblast
0.739
6.4
33055
1364.5
62
897.5
805
11562.1
0.996
title: Illumina HiSeq 2000 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C0003873", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:06Z", "External_Id": "SAMEA1064227", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:06Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "synovial fluid", "ORIGIN_SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/UBERON_0001090", "PASSAGE_IF_EXPANDED": "3", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000057", "Submitter_Id": "53_Mf08_LPFi_RA", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "Anja Hillmann, Pap Lab", "biomaterial_type": "Primary Cell Culture", "cell_type": "fibroblast", "common_name": "house mouse", "culture_conditions": "10% CO2, DMEM+10%FCS+P/S", "disease": "rheumatoid arthritis", "donor_age": "13", "donor_health_status": "healthy", "donor_id": "53_Mf08", "sex": "female", "markers": "isolated from the synovium", "phenotype": "rheumatoid arthritis", "sample_name": "53_Mf08_LPFi_RA", "scientific_name": "Mus musculus"}
ERX2579834 Fibroblast
0.663
6.7
40126
1343.7
399
1103.8
180
28015.1
0.985
title: Illumina HiSeq 2000 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C3898900", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:15Z", "External_Id": "SAMEA1064226", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:15Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "synovial fluid", "ORIGIN_SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/UBERON_0001090", "PASSAGE_IF_EXPANDED": "3", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000057", "Submitter_Id": "53_Mf07_LPFi_Ct", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "Anja Hillmann, Pap Lab", "biomaterial_type": "Primary Cell Culture", "cell_type": "fibroblast", "common_name": "house mouse", "culture_conditions": "10% CO2, DMEM+10%FCS+P/S", "disease": "healthy", "donor_age": "13", "donor_health_status": "healthy", "donor_id": "53_Mf07", "sex": "female", "markers": "isolated from the synovium", "phenotype": "healthy", "sample_name": "53_Mf07_LPFi_Ct", "scientific_name": "Mus musculus"}
ERX2579835 Fibroblast
0.699
1.9
24501
2231.8
6
1196.8
129
45291.6
0.995
title: Illumina HiSeq 2000 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C3898900", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:15Z", "External_Id": "SAMEA1064226", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:15Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "synovial fluid", "ORIGIN_SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/UBERON_0001090", "PASSAGE_IF_EXPANDED": "3", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000057", "Submitter_Id": "53_Mf07_LPFi_Ct", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "Anja Hillmann, Pap Lab", "biomaterial_type": "Primary Cell Culture", "cell_type": "fibroblast", "common_name": "house mouse", "culture_conditions": "10% CO2, DMEM+10%FCS+P/S", "disease": "healthy", "donor_age": "13", "donor_health_status": "healthy", "donor_id": "53_Mf07", "sex": "female", "markers": "isolated from the synovium", "phenotype": "healthy", "sample_name": "53_Mf07_LPFi_Ct", "scientific_name": "Mus musculus"}
ERX2579836 Fibroblast
0.699
1.9
22319
2295.9
10
1005.1
91
51619.7
0.995
title: Illumina HiSeq 2000 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C3898900", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:15Z", "External_Id": "SAMEA1064226", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:15Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "synovial fluid", "ORIGIN_SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/UBERON_0001090", "PASSAGE_IF_EXPANDED": "3", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000057", "Submitter_Id": "53_Mf07_LPFi_Ct", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "Anja Hillmann, Pap Lab", "biomaterial_type": "Primary Cell Culture", "cell_type": "fibroblast", "common_name": "house mouse", "culture_conditions": "10% CO2, DMEM+10%FCS+P/S", "disease": "healthy", "donor_age": "13", "donor_health_status": "healthy", "donor_id": "53_Mf07", "sex": "female", "markers": "isolated from the synovium", "phenotype": "healthy", "sample_name": "53_Mf07_LPFi_Ct", "scientific_name": "Mus musculus"}
ERX2579837 Fibroblast
0.692
7.0
42078
1394.1
65
918.3
486
15242.1
0.996
title: Illumina HiSeq 2000 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C3898900", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:15Z", "External_Id": "SAMEA1064226", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:15Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "synovial fluid", "ORIGIN_SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/UBERON_0001090", "PASSAGE_IF_EXPANDED": "3", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000057", "Submitter_Id": "53_Mf07_LPFi_Ct", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "Anja Hillmann, Pap Lab", "biomaterial_type": "Primary Cell Culture", "cell_type": "fibroblast", "common_name": "house mouse", "culture_conditions": "10% CO2, DMEM+10%FCS+P/S", "disease": "healthy", "donor_age": "13", "donor_health_status": "healthy", "donor_id": "53_Mf07", "sex": "female", "markers": "isolated from the synovium", "phenotype": "healthy", "sample_name": "53_Mf07_LPFi_Ct", "scientific_name": "Mus musculus"}
ERX2579838 Fibroblast
0.694
6.8
42593
1387.3
79
959.7
420
15994.4
0.995
title: Illumina HiSeq 2000 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C3898900", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:15Z", "External_Id": "SAMEA1064226", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:15Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "synovial fluid", "ORIGIN_SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/UBERON_0001090", "PASSAGE_IF_EXPANDED": "3", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000057", "Submitter_Id": "53_Mf07_LPFi_Ct", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "Anja Hillmann, Pap Lab", "biomaterial_type": "Primary Cell Culture", "cell_type": "fibroblast", "common_name": "house mouse", "culture_conditions": "10% CO2, DMEM+10%FCS+P/S", "disease": "healthy", "donor_age": "13", "donor_health_status": "healthy", "donor_id": "53_Mf07", "sex": "female", "markers": "isolated from the synovium", "phenotype": "healthy", "sample_name": "53_Mf07_LPFi_Ct", "scientific_name": "Mus musculus"}
ERX2579839 Fibroblast
0.716
9.0
29052
1227.3
975
951.6
440
17952.8
0.988
title: Illumina HiSeq 2000 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C0003873", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:11Z", "External_Id": "SAMEA1064225", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:11Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "synovial fluid", "ORIGIN_SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/UBERON_0001090", "PASSAGE_IF_EXPANDED": "4", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000057", "Submitter_Id": "53_Mf06_LPFi_RA", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "Anja Hillmann, Pap Lab", "biomaterial_type": "Primary Cell Culture", "cell_type": "fibroblast", "common_name": "house mouse", "culture_conditions": "10% CO2, DMEM+10%FCS+P/S", "disease": "rheumatoid arthritis", "donor_age": "13", "donor_health_status": "Rheumatoid arthritis", "donor_id": "53_Mf06", "sex": "female", "markers": "isolated from the synovium", "phenotype": "rheumatoid arthritis", "sample_name": "53_Mf06_LPFi_RA", "scientific_name": "Mus musculus"}
ERX2579840 Fibroblast
0.746
6.3
29308
1434.5
86
894.1
582
14140.3
0.995
title: Illumina HiSeq 2000 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C0003873", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:11Z", "External_Id": "SAMEA1064225", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:11Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "synovial fluid", "ORIGIN_SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/UBERON_0001090", "PASSAGE_IF_EXPANDED": "4", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000057", "Submitter_Id": "53_Mf06_LPFi_RA", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "Anja Hillmann, Pap Lab", "biomaterial_type": "Primary Cell Culture", "cell_type": "fibroblast", "common_name": "house mouse", "culture_conditions": "10% CO2, DMEM+10%FCS+P/S", "disease": "rheumatoid arthritis", "donor_age": "13", "donor_health_status": "Rheumatoid arthritis", "donor_id": "53_Mf06", "sex": "female", "markers": "isolated from the synovium", "phenotype": "rheumatoid arthritis", "sample_name": "53_Mf06_LPFi_RA", "scientific_name": "Mus musculus"}
ERX2579841 Fibroblast
0.748
5.3
27481
1513.7
37
1061.9
478
16408.0
0.995
title: Illumina HiSeq 2000 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C0003873", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:11Z", "External_Id": "SAMEA1064225", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:11Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "synovial fluid", "ORIGIN_SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/UBERON_0001090", "PASSAGE_IF_EXPANDED": "4", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000057", "Submitter_Id": "53_Mf06_LPFi_RA", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "Anja Hillmann, Pap Lab", "biomaterial_type": "Primary Cell Culture", "cell_type": "fibroblast", "common_name": "house mouse", "culture_conditions": "10% CO2, DMEM+10%FCS+P/S", "disease": "rheumatoid arthritis", "donor_age": "13", "donor_health_status": "Rheumatoid arthritis", "donor_id": "53_Mf06", "sex": "female", "markers": "isolated from the synovium", "phenotype": "rheumatoid arthritis", "sample_name": "53_Mf06_LPFi_RA", "scientific_name": "Mus musculus"}
ERX2579842 Fibroblast
0.681
10.5
43791
1308.5
418
1121.7
452
18117.0
0.979
title: Illumina HiSeq 2000 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C3898900", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:16Z", "External_Id": "SAMEA1064224", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:16Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "synovial fluid", "ORIGIN_SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/UBERON_0001090", "PASSAGE_IF_EXPANDED": "4", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000057", "Submitter_Id": "53_Mf05_LPFi_Ct", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "Anja Hillmann, Pap Lab", "biomaterial_type": "Primary Cell Culture", "cell_type": "fibroblast", "common_name": "house mouse", "culture_conditions": "10% CO2, DMEM+10%FCS+P/S", "disease": "healthy", "donor_age": "13", "donor_health_status": "healthy", "donor_id": "53_Mf05", "sex": "female", "markers": "isolated from the synovium", "phenotype": "healthy", "sample_name": "53_Mf05_LPFi_Ct", "scientific_name": "Mus musculus"}
ERX2579843 Fibroblast
0.696
6.6
40480
1508.3
63
1025.7
696
12471.1
0.995
title: Illumina HiSeq 2000 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C3898900", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:16Z", "External_Id": "SAMEA1064224", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:16Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "synovial fluid", "ORIGIN_SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/UBERON_0001090", "PASSAGE_IF_EXPANDED": "4", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000057", "Submitter_Id": "53_Mf05_LPFi_Ct", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "Anja Hillmann, Pap Lab", "biomaterial_type": "Primary Cell Culture", "cell_type": "fibroblast", "common_name": "house mouse", "culture_conditions": "10% CO2, DMEM+10%FCS+P/S", "disease": "healthy", "donor_age": "13", "donor_health_status": "healthy", "donor_id": "53_Mf05", "sex": "female", "markers": "isolated from the synovium", "phenotype": "healthy", "sample_name": "53_Mf05_LPFi_Ct", "scientific_name": "Mus musculus"}
ERX2579844 Fibroblast
0.706
5.1
33391
1713.2
48
1027.5
410
17161.4
0.986
title: Illumina HiSeq 2000 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C3898900", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:16Z", "External_Id": "SAMEA1064224", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:16Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "synovial fluid", "ORIGIN_SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/UBERON_0001090", "PASSAGE_IF_EXPANDED": "4", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000057", "Submitter_Id": "53_Mf05_LPFi_Ct", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "Anja Hillmann, Pap Lab", "biomaterial_type": "Primary Cell Culture", "cell_type": "fibroblast", "common_name": "house mouse", "culture_conditions": "10% CO2, DMEM+10%FCS+P/S", "disease": "healthy", "donor_age": "13", "donor_health_status": "healthy", "donor_id": "53_Mf05", "sex": "female", "markers": "isolated from the synovium", "phenotype": "healthy", "sample_name": "53_Mf05_LPFi_Ct", "scientific_name": "Mus musculus"}
ERX2579845 White Adipocyte
0.725
7.0
31310
1239.6
805
949.9
336
23635.7
0.982
title: Illumina HiSeq 2000 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C0015695", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:17Z", "External_Id": "SAMEA1064220", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:17Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "white adipose tissue", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000448", "Submitter_Id": "44_Mm09_WeAd_Db2", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "MPI Freiburg in-house colony", "biomaterial_type": "Primary Cell", "cell_type": "white adipocyte", "common_name": "house mouse", "disease": "obesity", "donor_age": "10", "donor_id": "44_Mm09", "sex": "male", "phenotype": "obese", "sample_name": "44_Mm09_WeAd_Db2", "scientific_name": "Mus musculus"}
ERX2579846 White Adipocyte
0.760
6.5
32808
1387.9
64
925.0
985
12103.7
0.993
title: Illumina HiSeq 2000 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C0015695", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:17Z", "External_Id": "SAMEA1064220", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:17Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "white adipose tissue", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000448", "Submitter_Id": "44_Mm09_WeAd_Db2", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "MPI Freiburg in-house colony", "biomaterial_type": "Primary Cell", "cell_type": "white adipocyte", "common_name": "house mouse", "disease": "obesity", "donor_age": "10", "donor_id": "44_Mm09", "sex": "male", "phenotype": "obese", "sample_name": "44_Mm09_WeAd_Db2", "scientific_name": "Mus musculus"}
ERX2579847 White Adipocyte
0.761
7.0
34688
1328.5
92
878.3
1056
11664.6
0.993
title: Illumina HiSeq 2000 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C0015695", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:17Z", "External_Id": "SAMEA1064220", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:17Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "white adipose tissue", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000448", "Submitter_Id": "44_Mm09_WeAd_Db2", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "MPI Freiburg in-house colony", "biomaterial_type": "Primary Cell", "cell_type": "white adipocyte", "common_name": "house mouse", "disease": "obesity", "donor_age": "10", "donor_id": "44_Mm09", "sex": "male", "phenotype": "obese", "sample_name": "44_Mm09_WeAd_Db2", "scientific_name": "Mus musculus"}
ERX2579848 White Adipocyte
0.740
10.6
37816
1123.8
446
922.7
729
14324.5
0.985
title: Illumina HiSeq 2000 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C0015695", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:02Z", "External_Id": "SAMEA1064219", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:02Z", "INSDC_status": "public", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000448", "Submitter_Id": "44_Mm08_WeAd_Db2", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "MPI Freiburg in-house colony", "biomaterial_type": "Primary Cell", "cell_type": "white adipocyte", "common_name": "house mouse", "disease": "obesity", "donor_age": "10", "donor_id": "44_Mm08", "sex": "male", "phenotype": "obese", "sample_name": "44_Mm08_WeAd_Db2", "scientific_name": "Mus musculus"}
ERX2579849 White Adipocyte
0.771
7.2
33834
1370.8
82
1026.4
1016
11433.4
0.995
title: Illumina HiSeq 2000 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C0015695", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:02Z", "External_Id": "SAMEA1064219", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:02Z", "INSDC_status": "public", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000448", "Submitter_Id": "44_Mm08_WeAd_Db2", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "MPI Freiburg in-house colony", "biomaterial_type": "Primary Cell", "cell_type": "white adipocyte", "common_name": "house mouse", "disease": "obesity", "donor_age": "10", "donor_id": "44_Mm08", "sex": "male", "phenotype": "obese", "sample_name": "44_Mm08_WeAd_Db2", "scientific_name": "Mus musculus"}
ERX2579850 White Adipocyte
0.770
7.1
34291
1360.6
82
979.2
734
12839.9
0.995
title: Illumina HiSeq 2000 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C0015695", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:02Z", "External_Id": "SAMEA1064219", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:02Z", "INSDC_status": "public", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000448", "Submitter_Id": "44_Mm08_WeAd_Db2", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "MPI Freiburg in-house colony", "biomaterial_type": "Primary Cell", "cell_type": "white adipocyte", "common_name": "house mouse", "disease": "obesity", "donor_age": "10", "donor_id": "44_Mm08", "sex": "male", "phenotype": "obese", "sample_name": "44_Mm08_WeAd_Db2", "scientific_name": "Mus musculus"}
ERX2579851 White Adipocyte
0.697
9.2
38485
1181.4
576
950.2
642
16024.5
0.982
title: Illumina HiSeq 2000 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C3898900", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:10Z", "External_Id": "SAMEA1064217", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:10Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "white adipose tissue", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000448", "Submitter_Id": "44_Mm05_WeAd_C1", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "MPI Freiburg in-house colony", "biomaterial_type": "Primary Cell", "cell_type": "white adipocyte", "common_name": "house mouse", "disease": "healthy", "donor_age": "10", "donor_id": "44_Mm05", "sex": "male", "phenotype": "lean", "sample_name": "44_Mm05_WeAd_C1", "scientific_name": "Mus musculus"}
ERX2579852 White Adipocyte
0.735
8.8
38083
1318.5
114
1051.0
871
12681.6
0.995
title: Illumina HiSeq 2000 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C3898900", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:10Z", "External_Id": "SAMEA1064217", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:10Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "white adipose tissue", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000448", "Submitter_Id": "44_Mm05_WeAd_C1", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "MPI Freiburg in-house colony", "biomaterial_type": "Primary Cell", "cell_type": "white adipocyte", "common_name": "house mouse", "disease": "healthy", "donor_age": "10", "donor_id": "44_Mm05", "sex": "male", "phenotype": "lean", "sample_name": "44_Mm05_WeAd_C1", "scientific_name": "Mus musculus"}
ERX2579853 White Adipocyte
0.736
8.7
39178
1293.0
107
1006.8
986
12075.8
0.995
title: Illumina HiSeq 2000 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C3898900", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:10Z", "External_Id": "SAMEA1064217", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:10Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "white adipose tissue", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000448", "Submitter_Id": "44_Mm05_WeAd_C1", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "MPI Freiburg in-house colony", "biomaterial_type": "Primary Cell", "cell_type": "white adipocyte", "common_name": "house mouse", "disease": "healthy", "donor_age": "10", "donor_id": "44_Mm05", "sex": "male", "phenotype": "lean", "sample_name": "44_Mm05_WeAd_C1", "scientific_name": "Mus musculus"}
ERX2579854 White Adipocyte
0.738
7.5
35666
1388.3
111
1042.0
765
13371.5
0.995
title: Illumina HiSeq 2000 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C3898900", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:10Z", "External_Id": "SAMEA1064217", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:10Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "white adipose tissue", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000448", "Submitter_Id": "44_Mm05_WeAd_C1", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "MPI Freiburg in-house colony", "biomaterial_type": "Primary Cell", "cell_type": "white adipocyte", "common_name": "house mouse", "disease": "healthy", "donor_age": "10", "donor_id": "44_Mm05", "sex": "male", "phenotype": "lean", "sample_name": "44_Mm05_WeAd_C1", "scientific_name": "Mus musculus"}
ERX2579855 White Adipocyte
0.701
7.7
36272
1251.1
428
973.4
537
18534.1
0.980
title: Illumina HiSeq 2000 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C3898900", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:19Z", "External_Id": "SAMEA1064216", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:19Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "white adipose tissue", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000448", "Submitter_Id": "44_Mm04_WeAd_C1", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "MPI Freiburg in-house colony", "biomaterial_type": "Primary Cell", "cell_type": "white adipocyte", "common_name": "house mouse", "disease": "healthy", "donor_age": "10", "donor_id": "44_Mm04", "sex": "male", "phenotype": "lean", "sample_name": "44_Mm04_WeAd_C1", "scientific_name": "Mus musculus"}
ERX2579856 White Adipocyte
0.738
8.2
36175
1374.3
108
1022.2
835
13081.7
0.995
title: Illumina HiSeq 2000 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C3898900", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:19Z", "External_Id": "SAMEA1064216", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:19Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "white adipose tissue", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000448", "Submitter_Id": "44_Mm04_WeAd_C1", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "MPI Freiburg in-house colony", "biomaterial_type": "Primary Cell", "cell_type": "white adipocyte", "common_name": "house mouse", "disease": "healthy", "donor_age": "10", "donor_id": "44_Mm04", "sex": "male", "phenotype": "lean", "sample_name": "44_Mm04_WeAd_C1", "scientific_name": "Mus musculus"}
ERX2579857 White Adipocyte
0.738
8.0
36118
1382.7
87
1026.9
873
12572.7
0.995
title: Illumina HiSeq 2000 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C3898900", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:19Z", "External_Id": "SAMEA1064216", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:19Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "white adipose tissue", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000448", "Submitter_Id": "44_Mm04_WeAd_C1", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "MPI Freiburg in-house colony", "biomaterial_type": "Primary Cell", "cell_type": "white adipocyte", "common_name": "house mouse", "disease": "healthy", "donor_age": "10", "donor_id": "44_Mm04", "sex": "male", "phenotype": "lean", "sample_name": "44_Mm04_WeAd_C1", "scientific_name": "Mus musculus"}
ERX2579858 White Adipocyte
0.741
7.6
38530
1336.7
101
1057.9
871
12563.6
0.994
title: Illumina HiSeq 2000 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C3898900", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:19Z", "External_Id": "SAMEA1064216", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:19Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "white adipose tissue", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000448", "Submitter_Id": "44_Mm04_WeAd_C1", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "MPI Freiburg in-house colony", "biomaterial_type": "Primary Cell", "cell_type": "white adipocyte", "common_name": "house mouse", "disease": "healthy", "donor_age": "10", "donor_id": "44_Mm04", "sex": "male", "phenotype": "lean", "sample_name": "44_Mm04_WeAd_C1", "scientific_name": "Mus musculus"}
ERX2579859 White Adipocyte
0.692
10.6
40307
1133.1
739
929.0
873
14419.1
0.982
title: Illumina HiSeq 2000 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C3898900", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:37:54Z", "External_Id": "SAMEA1064215", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:37:54Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "white adipose tissue", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000448", "Submitter_Id": "44_Mm03_WeAd_C2", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "MPI Freiburg in-house colony", "biomaterial_type": "Primary Cell", "cell_type": "white adipocyte", "common_name": "house mouse", "disease": "healthy", "donor_age": "10", "donor_id": "44_Mm03", "sex": "male", "phenotype": "lean", "sample_name": "44_Mm03_WeAd_C2", "scientific_name": "Mus musculus"}
ERX2579860 White Adipocyte
0.737
7.6
36611
1371.2
97
1078.0
875
12767.1
0.994
title: Illumina HiSeq 2000 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C3898900", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:37:54Z", "External_Id": "SAMEA1064215", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:37:54Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "white adipose tissue", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000448", "Submitter_Id": "44_Mm03_WeAd_C2", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "MPI Freiburg in-house colony", "biomaterial_type": "Primary Cell", "cell_type": "white adipocyte", "common_name": "house mouse", "disease": "healthy", "donor_age": "10", "donor_id": "44_Mm03", "sex": "male", "phenotype": "lean", "sample_name": "44_Mm03_WeAd_C2", "scientific_name": "Mus musculus"}
ERX2579861 White Adipocyte
0.737
7.7
36587
1364.7
105
1065.8
912
12596.1
0.994
title: Illumina HiSeq 2000 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C3898900", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:37:54Z", "External_Id": "SAMEA1064215", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:37:54Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "white adipose tissue", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000448", "Submitter_Id": "44_Mm03_WeAd_C2", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "MPI Freiburg in-house colony", "biomaterial_type": "Primary Cell", "cell_type": "white adipocyte", "common_name": "house mouse", "disease": "healthy", "donor_age": "10", "donor_id": "44_Mm03", "sex": "male", "phenotype": "lean", "sample_name": "44_Mm03_WeAd_C2", "scientific_name": "Mus musculus"}
ERX2579862 White Adipocyte
0.739
6.9
35594
1407.1
95
1071.2
750
13724.4
0.994
title: Illumina HiSeq 2000 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C3898900", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:37:54Z", "External_Id": "SAMEA1064215", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:37:54Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "white adipose tissue", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000448", "Submitter_Id": "44_Mm03_WeAd_C2", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "MPI Freiburg in-house colony", "biomaterial_type": "Primary Cell", "cell_type": "white adipocyte", "common_name": "house mouse", "disease": "healthy", "donor_age": "10", "donor_id": "44_Mm03", "sex": "male", "phenotype": "lean", "sample_name": "44_Mm03_WeAd_C2", "scientific_name": "Mus musculus"}
ERX2579863 White Adipocyte
0.719
4.1
30346
1493.6
169
1161.1
222
35273.0
0.965
title: Illumina HiSeq 2000 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C3898900", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:18Z", "External_Id": "SAMEA1064213", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:18Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "white adipose tissue", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000448", "Submitter_Id": "44_Mm01_WeAd_C2", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "MPI Freiburg in-house colony", "biomaterial_type": "Primary Cell", "cell_type": "white adipocyte", "common_name": "house mouse", "disease": "healthy", "donor_age": "10", "donor_id": "44_Mm01", "sex": "male", "phenotype": "lean", "sample_name": "44_Mm01_WeAd_C2", "scientific_name": "Mus musculus"}
ERX2579864 White Adipocyte
0.714
10.4
40033
1136.4
451
909.2
923
12878.6
0.995
title: Illumina HiSeq 2000 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C3898900", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:18Z", "External_Id": "SAMEA1064213", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:18Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "white adipose tissue", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000448", "Submitter_Id": "44_Mm01_WeAd_C2", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "MPI Freiburg in-house colony", "biomaterial_type": "Primary Cell", "cell_type": "white adipocyte", "common_name": "house mouse", "disease": "healthy", "donor_age": "10", "donor_id": "44_Mm01", "sex": "male", "phenotype": "lean", "sample_name": "44_Mm01_WeAd_C2", "scientific_name": "Mus musculus"}
ERX2579865 White Adipocyte
0.715
10.2
39992
1142.0
473
896.0
1057
12049.5
0.995
title: Illumina HiSeq 2000 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C3898900", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:18Z", "External_Id": "SAMEA1064213", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:18Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "white adipose tissue", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000448", "Submitter_Id": "44_Mm01_WeAd_C2", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "MPI Freiburg in-house colony", "biomaterial_type": "Primary Cell", "cell_type": "white adipocyte", "common_name": "house mouse", "disease": "healthy", "donor_age": "10", "donor_id": "44_Mm01", "sex": "male", "phenotype": "lean", "sample_name": "44_Mm01_WeAd_C2", "scientific_name": "Mus musculus"}
ERX2579866 White Adipocyte
0.716
10.3
39571
1143.7
449
920.9
1053
11909.6
0.995
title: Illumina HiSeq 2000 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C3898900", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:18Z", "External_Id": "SAMEA1064213", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:18Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "white adipose tissue", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000448", "Submitter_Id": "44_Mm01_WeAd_C2", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "MPI Freiburg in-house colony", "biomaterial_type": "Primary Cell", "cell_type": "white adipocyte", "common_name": "house mouse", "disease": "healthy", "donor_age": "10", "donor_id": "44_Mm01", "sex": "male", "phenotype": "lean", "sample_name": "44_Mm01_WeAd_C2", "scientific_name": "Mus musculus"}
ERX2579867 White Adipocyte
0.716
7.6
38030
1201.4
269
963.9
975
12213.3
0.995
title: Illumina HiSeq 2000 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C3898900", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:18Z", "External_Id": "SAMEA1064213", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:18Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "white adipose tissue", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000448", "Submitter_Id": "44_Mm01_WeAd_C2", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "MPI Freiburg in-house colony", "biomaterial_type": "Primary Cell", "cell_type": "white adipocyte", "common_name": "house mouse", "disease": "healthy", "donor_age": "10", "donor_id": "44_Mm01", "sex": "male", "phenotype": "lean", "sample_name": "44_Mm01_WeAd_C2", "scientific_name": "Mus musculus"}
ERX2579869 Hepatocyte
0.714
3.3
30728
1556.2
171
1052.9
164
46280.8
0.984
title: Illumina HiSeq 2500 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C0015695", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:12Z", "External_Id": "SAMEA1064178", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:12Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "liver", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000182", "Submitter_Id": "41_Mm16_LiHe_OS", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "Janvier Labs", "biomaterial_type": "Primary Cell", "cell_type": "hepatocyte", "common_name": "house mouse", "disease": "obese", "donor_age": "13", "donor_id": "41_Mm16", "sex": "male", "phenotype": "obese", "sample_name": "41_Mm16_LiHe_OS", "scientific_name": "Mus musculus"}
ERX2579870 Liver
0.707
2.5
24765
1570.0
195
1049.8
72
68281.1
0.983
title: Illumina HiSeq 2500 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C0015695", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:11Z", "External_Id": "SAMEA1064177", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:11Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "liver", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/UBERON_0002107, NA", "Submitter_Id": "41_Mm15_LiNP_OS", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "Janvier Labs", "biomaterial_type": "Primary Cell", "cell_type": "liver", "common_name": "house mouse", "disease": "obese", "donor_age": "13", "donor_id": "41_Mm15", "sex": "male", "phenotype": "obese", "sample_name": "41_Mm15_LiNP_OS", "scientific_name": "Mus musculus"}
ERX2579871 Hepatocyte
0.728
3.4
30723
1554.7
144
1173.5
222
41205.8
0.985
title: Illumina HiSeq 2500 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C0015695", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:14Z", "External_Id": "SAMEA1064175", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:14Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "liver", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000182", "Submitter_Id": "41_Mm15_LiHe_OS", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "Janvier Labs", "biomaterial_type": "Primary Cell", "cell_type": "hepatocyte", "common_name": "house mouse", "disease": "obese", "donor_age": "13", "donor_id": "41_Mm15", "sex": "male", "phenotype": "obese", "sample_name": "41_Mm15_LiHe_OS", "scientific_name": "Mus musculus"}
ERX2579872 Liver
0.708
3.6
25973
1512.0
193
1042.0
211
33308.6
0.976
title: Illumina HiSeq 2500 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C0424678", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:18Z", "External_Id": "SAMEA1064174", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:18Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "liver", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/UBERON_0002107, NA", "Submitter_Id": "41_Mm14_LiNP_OC", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "Janvier Labs", "biomaterial_type": "Primary Cell", "cell_type": "liver", "common_name": "house mouse", "disease": "lean", "donor_age": "13", "donor_id": "41_Mm14", "sex": "male", "phenotype": "lean", "sample_name": "41_Mm14_LiNP_OC", "scientific_name": "Mus musculus"}
ERX2579873 Hepatocyte
0.735
4.0
36175
1495.1
125
1250.6
410
32165.2
0.983
title: Illumina HiSeq 2500 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C0424678", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:07Z", "External_Id": "SAMEA1064173", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:07Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "liver", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000182", "Submitter_Id": "41_Mm14_LiHe_OC", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "Janvier Labs", "biomaterial_type": "Primary Cell", "cell_type": "hepatocyte", "common_name": "house mouse", "disease": "lean", "donor_age": "13", "donor_id": "41_Mm14", "sex": "male", "phenotype": "lean", "sample_name": "41_Mm14_LiHe_OC", "scientific_name": "Mus musculus"}
ERX2579874 Liver
0.709
3.1
26511
1545.0
148
1102.7
117
41954.8
0.981
title: Illumina HiSeq 2500 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C0424678", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:15Z", "External_Id": "SAMEA1064172", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:15Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "liver", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/UBERON_0002107, NA", "Submitter_Id": "41_Mm13_LiNP_OC", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "Janvier Labs", "biomaterial_type": "Primary Cell", "cell_type": "liver", "common_name": "house mouse", "disease": "lean", "donor_age": "13", "donor_id": "41_Mm13", "sex": "male", "phenotype": "lean", "sample_name": "41_Mm13_LiNP_OC", "scientific_name": "Mus musculus"}
ERX2579875 Hepatocyte
0.734
5.4
38647
1405.6
153
1186.0
479
28456.6
0.985
title: Illumina HiSeq 2500 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C0424678", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:37:56Z", "External_Id": "SAMEA1064171", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:37:56Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "liver", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000182", "Submitter_Id": "41_Mm13_LiHe_OC", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "Janvier Labs", "biomaterial_type": "Primary Cell", "cell_type": "hepatocyte", "common_name": "house mouse", "disease": "lean", "donor_age": "13", "donor_id": "41_Mm13", "sex": "male", "phenotype": "lean", "sample_name": "41_Mm13_LiHe_OC", "scientific_name": "Mus musculus"}
ERX2579876 Liver
0.732
4.3
36348
1461.1
150
1177.5
267
37743.5
0.981
title: Illumina HiSeq 2500 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C0015695", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:14Z", "External_Id": "SAMEA1064170", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:14Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "liver", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/UBERON_0002107, NA", "Submitter_Id": "41_Mm12_LiNP_OS", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "Janvier Labs", "biomaterial_type": "Primary Cell", "cell_type": "liver", "common_name": "house mouse", "disease": "obese", "donor_age": "12", "donor_id": "41_Mm12", "sex": "male", "phenotype": "obese", "sample_name": "41_Mm12_LiNP_OS", "scientific_name": "Mus musculus"}
ERX2579877 Hepatocyte
0.710
2.9
30249
1603.2
121
1178.8
79
63946.9
0.978
title: Illumina HiSeq 2500 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C0015695", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:18Z", "External_Id": "SAMEA1064169", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:18Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "liver", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000182", "Submitter_Id": "41_Mm12_LiHe_OS", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "Janvier Labs", "biomaterial_type": "Primary Cell", "cell_type": "hepatocyte", "common_name": "house mouse", "disease": "obese", "donor_age": "12", "donor_id": "41_Mm12", "sex": "male", "phenotype": "obese", "sample_name": "41_Mm12_LiHe_OS", "scientific_name": "Mus musculus"}
ERX2579878 Liver
0.734
3.9
34994
1512.8
144
1222.4
253
38376.7
0.981
title: Illumina HiSeq 2500 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C0015695", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:08Z", "External_Id": "SAMEA1064168", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:08Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "liver", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/UBERON_0002107, NA", "Submitter_Id": "41_Mm11_LiNP_OS", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "Janvier Labs", "biomaterial_type": "Primary Cell", "cell_type": "liver", "common_name": "house mouse", "disease": "obese", "donor_age": "12", "donor_id": "41_Mm11", "sex": "male", "phenotype": "obese", "sample_name": "41_Mm11_LiNP_OS", "scientific_name": "Mus musculus"}
ERX2579879 Hepatocyte
0.717
3.4
32278
1546.5
151
1129.0
94
57430.2
0.978
title: Illumina HiSeq 2500 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C0015695", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:15Z", "External_Id": "SAMEA1064167", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:15Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "liver", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000182", "Submitter_Id": "41_Mm11_LiHe_OS", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "Janvier Labs", "biomaterial_type": "Primary Cell", "cell_type": "hepatocyte", "common_name": "house mouse", "disease": "obese", "donor_age": "12", "donor_id": "41_Mm11", "sex": "male", "phenotype": "obese", "sample_name": "41_Mm11_LiHe_OS", "scientific_name": "Mus musculus"}
ERX2579880 Liver
0.715
3.4
25398
1514.6
157
1083.9
193
36839.7
0.980
title: Illumina HiSeq 2500 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C0424678", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:12Z", "External_Id": "SAMEA1064166", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:12Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "liver", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/UBERON_0002107, NA", "Submitter_Id": "41_Mm10_LiNP_OC", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "Janvier Labs", "biomaterial_type": "Primary Cell", "cell_type": "liver", "common_name": "house mouse", "disease": "lean", "donor_age": "12", "donor_id": "41_Mm10", "sex": "male", "phenotype": "lean", "sample_name": "41_Mm10_LiNP_OC", "scientific_name": "Mus musculus"}
ERX2579881 Hepatocyte
0.723
5.4
39145
1400.6
181
1284.6
445
29057.7
0.983
title: Illumina HiSeq 2500 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C0424678", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:16Z", "External_Id": "SAMEA1064165", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:16Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "liver", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000182", "Submitter_Id": "41_Mm10_LiHe_OC", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "Janvier Labs", "biomaterial_type": "Primary Cell", "cell_type": "hepatocyte", "common_name": "house mouse", "disease": "lean", "donor_age": "12", "donor_id": "41_Mm10", "sex": "male", "phenotype": "lean", "sample_name": "41_Mm10_LiHe_OC", "scientific_name": "Mus musculus"}
ERX2579882 Liver
0.714
4.4
26647
1436.6
234
1047.6
196
33242.6
0.983
title: Illumina HiSeq 2500 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C0424678", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:01Z", "External_Id": "SAMEA1064164", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:01Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "liver", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/UBERON_0002107, NA", "Submitter_Id": "41_Mm09_LiNP_OC", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "Janvier Labs", "biomaterial_type": "Primary Cell", "cell_type": "liver", "common_name": "house mouse", "disease": "lean", "donor_age": "12", "donor_id": "41_Mm09", "sex": "male", "phenotype": "lean", "sample_name": "41_Mm09_LiNP_OC", "scientific_name": "Mus musculus"}
ERX2579883 Hepatocyte
0.729
6.0
40115
1356.2
143
1200.2
450
29227.8
0.987
title: Illumina HiSeq 2500 paired end sequencing; {"DISEASE_ONTOLOGY_URI": "https://ncim.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI Metathesaurus&code=C0424678", "DONOR_AGE_UNIT": "week", "DONOR_LIFE_STAGE": "adult", "ENA-CHECKLIST": "ERC000026", "ENA-FIRST-PUBLIC": "2018-06-11T17:02:58Z", "ENA-LAST-UPDATE": "2019-05-20T15:38:02Z", "External_Id": "SAMEA1064162", "INSDC_center_name": "DKFZ", "INSDC_first_public": "2018-06-11T17:02:58Z", "INSDC_last_update": "2019-05-20T15:38:02Z", "INSDC_status": "public", "ORIGIN_SAMPLE": "liver", "SAMPLE_ONTOLOGY_URI": "http://purl.obolibrary.org/obo/CL_0000182", "Submitter_Id": "41_Mm09_LiHe_OC", "VALIDATED_AGAINST_METADATA_SPEC": "1.0/SAMPLE", "biomaterial_provider": "Janvier Labs", "biomaterial_type": "Primary Cell", "cell_type": "hepatocyte", "common_name": "house mouse", "disease": "lean", "donor_age": "12", "donor_id": "41_Mm09", "sex": "male", "phenotype": "lean", "sample_name": "41_Mm09_LiHe_OC", "scientific_name": "Mus musculus"}
Methods
All analysis was done using a bisulfite sequnecing data analysis
pipeline DNMTools
developed in the Smith lab at USC.
Mapping reads from bisulfite sequencing :
Bisulfite treated reads are mapped to the genomes with the
abismal
Estimating methylation levels :
After reads are mapped and filtered, the
dnmtools counts command is used to obtain read
coverage and estimate methylation levels at individual cytosine
sites. We count the number of methylated reads (those containing a
C) and the number of unmethylated reads (those containing a T) at
each nucleotide in a mapped read that corresponds to a cytosine in
the reference genome. The methylation level of that cytosine is
estimated as the ratio of methylated to total reads covering that
cytosine. For cytosines in the symmetric CpG sequence context,
reads from the both strands are collapsed to give a single
estimate. Very rarely do the levels differ between strands
(typically only if there has been a substitution, as in a somatic
mutation), and this approach gives a better estimate.
Bisulfite conversion rate :
The bisulfite conversion rate for an experiment is estimated with
the dnmtools bsrate command, which computes the
fraction of successfully converted nucleotides in reads (those
read out as Ts) among all nucleotides in the reads mapped that map
over cytosines in the reference genome. This is done either using
a spike-in (e.g., lambda), the mitochondrial DNA, or the nuclear
genome. In the latter case, only non-CpG sites are used. While
this latter approach can be impacted by non-CpG cytosine
methylation, in practice it never amounts to much.
Identifying hypomethylated regions (HMRs) :
In most mammalian cells, the majority of the genome has high
methylation, and regions of low methylation are typically the
interesting features. (This seems to be true for essentially all
healthy differentiated cell types, but not cells of very early
embryogenesis, various germ cells and precursors, and placental
lineage cells.) These are valleys of low methylation are called
hypomethylated regions (HMR) for historical reasons. To identify
the HMRs, we use the dnmtools hmr command, which uses
a statistical model that accounts for both the methylation level
fluctations and the varying amounts of data available at each CpG
site.
Partially methylated domains :
Partially methylated domains are large genomic regions showing
partial methylation observed in immortalized cell lines and
cancerous cells. The pmd program is used to identify
PMDs.
Allele-specific methylation :
Allele-Specific methylated regions refers to regions where the
parental allele is differentially methylated compared to the
maternal allele. The program allelic is used to
compute allele-specific methylation score can be computed for each
CpG site by testing the linkage between methylation status of
adjacent reads, and the program amrfinder is used to
identify regions with allele-specific methylation.
For more detailed description of the methods of each step, please
refer to
the DNMTools
documentation .
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