Mouse methylome studies ERP003907 Track Settings
 
Methylome_and_Hydroxymethylome_of_iPSC [ESC, MEF, iPSC]

Track collection: Mouse methylome studies

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experiment
ERX1246049 
ERX1246050 
ERX1246056 
ERX371615 
ERX371616 
ERX371617 
ERX371618 
ERX371619 
ERX371620 
ERX371621 
ERX371622 
ERX371623 
ERX371624 
ERX371625 
ERX371626 
ERX371627 
ERX371628 
ERX371629 
ERX371630 
ERX371631 
ERX371632 
ERX371633 
ERX371634 
ERX502124 
ERX502125 
ERX502126 
ERX502127 
ERX502128 
ERX502129 
ERX502130 
ERX502131 
ERX502132 
ERX502133 
ERX502134 
ERX502135 
ERX502136 
ERX502137 
ERX502138 
ERX502139 
ERX502140 
ERX502141 
ERX502142 
ERX502143 
ERX502144 
ERX502145 
ERX502146 
ERX502147 
ERX502151 
ERX502153 
ERX622633 
ERX622635 
ERX622636 
ERX622637 
ERX622638 
ERX625586 
ERX625587 
ERX625588 
ERX625589 
ERX625590 
ERX625591 
ERX634528 
ERX634529 
ERX634530 
ERX634531 
ERX634532 
ERX634533 
ERX634534 
ERX634535 
ERX634536 
ERX634537 
ERX634538 
ERX634539 
experiment
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 ERX1246049  HMR  ERS822411 / ERX1246049 (HMR)   Schema 
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 ERX1246049  CpG methylation  ERS822411 / ERX1246049 (CpG methylation)   Schema 
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 ERX371615  HMR  iPSC / ERX371615 (HMR)   Schema 
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 ERX1246050  CpG methylation  ERS822412 / ERX1246050 (CpG methylation)   Schema 
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 ERX371617  HMR  iPSC / ERX371617 (HMR)   Schema 
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 ERX1246056  CpG methylation  ERS822412 / ERX1246056 (CpG methylation)   Schema 
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 ERX371618  HMR  iPSC / ERX371618 (HMR)   Schema 
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 ERX371615  CpG methylation  iPSC / ERX371615 (CpG methylation)   Schema 
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 ERX371620  HMR  iPSC / ERX371620 (HMR)   Schema 
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 ERX371616  CpG methylation  iPSC / ERX371616 (CpG methylation)   Schema 
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 ERX371621  HMR  ESC / ERX371621 (HMR)   Schema 
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 ERX371617  CpG methylation  iPSC / ERX371617 (CpG methylation)   Schema 
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 ERX371622  HMR  ESC / ERX371622 (HMR)   Schema 
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 ERX371618  CpG methylation  iPSC / ERX371618 (CpG methylation)   Schema 
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 ERX371623  HMR  iPSC / ERX371623 (HMR)   Schema 
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 ERX371619  CpG methylation  iPSC / ERX371619 (CpG methylation)   Schema 
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 ERX371624  HMR  iPSC / ERX371624 (HMR)   Schema 
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 ERX371620  CpG methylation  iPSC / ERX371620 (CpG methylation)   Schema 
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 ERX371625  HMR  iPSC / ERX371625 (HMR)   Schema 
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 ERX371621  CpG methylation  ESC / ERX371621 (CpG methylation)   Schema 
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 ERX371626  HMR  iPSC / ERX371626 (HMR)   Schema 
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 ERX371622  CpG methylation  ESC / ERX371622 (CpG methylation)   Schema 
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 ERX371627  HMR  iPSC / ERX371627 (HMR)   Schema 
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 ERX371623  CpG methylation  iPSC / ERX371623 (CpG methylation)   Schema 
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 ERX371628  HMR  iPSC / ERX371628 (HMR)   Schema 
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 ERX371624  CpG methylation  iPSC / ERX371624 (CpG methylation)   Schema 
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 ERX371629  HMR  iPSC / ERX371629 (HMR)   Schema 
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 ERX371625  CpG methylation  iPSC / ERX371625 (CpG methylation)   Schema 
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 ERX371630  HMR  iPSC / ERX371630 (HMR)   Schema 
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 ERX371626  CpG methylation  iPSC / ERX371626 (CpG methylation)   Schema 
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 ERX371631  HMR  MEF / ERX371631 (HMR)   Schema 
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 ERX371627  CpG methylation  iPSC / ERX371627 (CpG methylation)   Schema 
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 ERX371632  HMR  MEF / ERX371632 (HMR)   Schema 
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 ERX371628  CpG methylation  iPSC / ERX371628 (CpG methylation)   Schema 
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 ERX371633  HMR  MEF / ERX371633 (HMR)   Schema 
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 ERX371629  CpG methylation  iPSC / ERX371629 (CpG methylation)   Schema 
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 ERX371634  HMR  MEF / ERX371634 (HMR)   Schema 
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 ERX371630  CpG methylation  iPSC / ERX371630 (CpG methylation)   Schema 
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 ERX502124  HMR  MEF / ERX502124 (HMR)   Schema 
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 ERX371631  CpG methylation  MEF / ERX371631 (CpG methylation)   Schema 
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 ERX502125  HMR  MEF / ERX502125 (HMR)   Schema 
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 ERX371632  CpG methylation  MEF / ERX371632 (CpG methylation)   Schema 
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 ERX502126  HMR  MEF / ERX502126 (HMR)   Schema 
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 ERX371633  CpG methylation  MEF / ERX371633 (CpG methylation)   Schema 
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 ERX502127  HMR  ESC / ERX502127 (HMR)   Schema 
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 ERX371634  CpG methylation  MEF / ERX371634 (CpG methylation)   Schema 
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 ERX502128  HMR  ESC / ERX502128 (HMR)   Schema 
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 ERX502124  CpG methylation  MEF / ERX502124 (CpG methylation)   Schema 
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 ERX502129  HMR  ESC / ERX502129 (HMR)   Schema 
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 ERX502125  CpG methylation  MEF / ERX502125 (CpG methylation)   Schema 
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 ERX502130  HMR  MEF / ERX502130 (HMR)   Schema 
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 ERX502126  CpG methylation  MEF / ERX502126 (CpG methylation)   Schema 
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 ERX502131  HMR  MEF / ERX502131 (HMR)   Schema 
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 ERX502127  CpG methylation  ESC / ERX502127 (CpG methylation)   Schema 
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 ERX502132  HMR  MEF / ERX502132 (HMR)   Schema 
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 ERX502128  CpG methylation  ESC / ERX502128 (CpG methylation)   Schema 
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 ERX502133  HMR  ESC / ERX502133 (HMR)   Schema 
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 ERX502129  CpG methylation  ESC / ERX502129 (CpG methylation)   Schema 
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 ERX502134  HMR  ESC / ERX502134 (HMR)   Schema 
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 ERX502130  CpG methylation  MEF / ERX502130 (CpG methylation)   Schema 
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 ERX502135  HMR  ESC / ERX502135 (HMR)   Schema 
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 ERX502131  CpG methylation  MEF / ERX502131 (CpG methylation)   Schema 
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 ERX622635  HMR  MEF / ERX622635 (HMR)   Schema 
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 ERX502132  CpG methylation  MEF / ERX502132 (CpG methylation)   Schema 
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 ERX622637  HMR  ESC / ERX622637 (HMR)   Schema 
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 ERX502133  CpG methylation  ESC / ERX502133 (CpG methylation)   Schema 
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 ERX625590  HMR  ESC / ERX625590 (HMR)   Schema 
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 ERX502134  CpG methylation  ESC / ERX502134 (CpG methylation)   Schema 
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 ERX634532  HMR  ESC / ERX634532 (HMR)   Schema 
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 ERX502135  CpG methylation  ESC / ERX502135 (CpG methylation)   Schema 
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 ERX634538  HMR  ESC / ERX634538 (HMR)   Schema 
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 ERX502136  CpG methylation  iPSC / ERX502136 (CpG methylation)   Schema 
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 ERX502137  CpG methylation  iPSC / ERX502137 (CpG methylation)   Schema 
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 ERX502138  CpG methylation  iPSC / ERX502138 (CpG methylation)   Schema 
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 ERX502139  CpG methylation  iPSC / ERX502139 (CpG methylation)   Schema 
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 ERX502140  CpG methylation  iPSC / ERX502140 (CpG methylation)   Schema 
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 ERX502141  CpG methylation  iPSC / ERX502141 (CpG methylation)   Schema 
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 ERX502142  CpG methylation  iPSC / ERX502142 (CpG methylation)   Schema 
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 ERX502143  CpG methylation  iPSC / ERX502143 (CpG methylation)   Schema 
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 ERX502144  CpG methylation  iPSC / ERX502144 (CpG methylation)   Schema 
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 ERX502145  CpG methylation  iPSC / ERX502145 (CpG methylation)   Schema 
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 ERX502146  CpG methylation  iPSC / ERX502146 (CpG methylation)   Schema 
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 ERX502147  CpG methylation  iPSC / ERX502147 (CpG methylation)   Schema 
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 ERX502151  CpG methylation  iPSC / ERX502151 (CpG methylation)   Schema 
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 ERX502153  CpG methylation  iPSC / ERX502153 (CpG methylation)   Schema 
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 ERX622633  CpG methylation  MEF / ERX622633 (CpG methylation)   Schema 
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 ERX622635  CpG methylation  MEF / ERX622635 (CpG methylation)   Schema 
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 ERX622636  CpG methylation  ESC / ERX622636 (CpG methylation)   Schema 
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 ERX622637  CpG methylation  ESC / ERX622637 (CpG methylation)   Schema 
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 ERX622638  CpG methylation  ESC / ERX622638 (CpG methylation)   Schema 
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 ERX625586  CpG methylation  MEF / ERX625586 (CpG methylation)   Schema 
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 ERX625587  CpG methylation  MEF / ERX625587 (CpG methylation)   Schema 
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 ERX625588  CpG methylation  MEF / ERX625588 (CpG methylation)   Schema 
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 ERX625589  CpG methylation  ESC / ERX625589 (CpG methylation)   Schema 
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 ERX625590  CpG methylation  ESC / ERX625590 (CpG methylation)   Schema 
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 ERX625591  CpG methylation  ESC / ERX625591 (CpG methylation)   Schema 
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 ERX634528  CpG methylation  MEF / ERX634528 (CpG methylation)   Schema 
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 ERX634529  CpG methylation  MEF / ERX634529 (CpG methylation)   Schema 
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 ERX634530  CpG methylation  MEF / ERX634530 (CpG methylation)   Schema 
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 ERX634531  CpG methylation  ESC / ERX634531 (CpG methylation)   Schema 
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 ERX634532  CpG methylation  ESC / ERX634532 (CpG methylation)   Schema 
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 ERX634533  CpG methylation  ESC / ERX634533 (CpG methylation)   Schema 
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 ERX634534  CpG methylation  MEF / ERX634534 (CpG methylation)   Schema 
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 ERX634535  CpG methylation  MEF / ERX634535 (CpG methylation)   Schema 
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 ERX634536  CpG methylation  MEF / ERX634536 (CpG methylation)   Schema 
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 ERX634537  CpG methylation  ESC / ERX634537 (CpG methylation)   Schema 
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 ERX634538  CpG methylation  ESC / ERX634538 (CpG methylation)   Schema 
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 ERX634539  CpG methylation  ESC / ERX634539 (CpG methylation)   Schema 
    

Study title: Methylome_and_Hydroxymethylome_of_iPSC
SRA: ERP003907
GEO: not found
Pubmed: not found

Experiment Label Methylation Coverage HMRs HMR size AMRs AMR size PMDs PMD size Conversion Details
ERX1246049 ERS822411 0.692 1.8 21671 2030.2 0 0.0 283 56651.9 0.992 title: Illumina HiSeq 2500 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2015-12-08T14:02:50Z", "ENA-LAST-UPDATE": "2018-03-09T04:10:29Z", "External_Id": "SAMEA3515262", "INSDC_center_name": "SC", "INSDC_first_public": "2015-12-08T14:02:50Z", "INSDC_last_update": "2018-03-09T04:10:29Z", "INSDC_status": "public", "Submitter_Id": "2769STDY6182410-sc-2382182", "common_name": "house mouse", "sample_name": "2769STDY6182410-sc-2382182", "scientific_name": "Mus musculus"}
ERX1246050 ERS822412 0.381 1.8 0 0.0 0 0.0 1 41725280.0 0.993 title: Illumina HiSeq 2500 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2015-12-08T14:02:50Z", "ENA-LAST-UPDATE": "2018-03-09T04:10:29Z", "External_Id": "SAMEA3515263", "INSDC_center_name": "SC", "INSDC_first_public": "2015-12-08T14:02:50Z", "INSDC_last_update": "2018-03-09T04:10:29Z", "INSDC_status": "public", "Submitter_Id": "2769STDY6182411-sc-2382183", "common_name": "house mouse", "sample_name": "2769STDY6182411-sc-2382183", "scientific_name": "Mus musculus"}
ERX1246056 ERS822412 0.382 1.7 3 613500.3 0 0.0 0 0.0 0.993 title: Illumina HiSeq 2500 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2015-12-08T14:02:50Z", "ENA-LAST-UPDATE": "2018-03-09T04:10:29Z", "External_Id": "SAMEA3515263", "INSDC_center_name": "SC", "INSDC_first_public": "2015-12-08T14:02:50Z", "INSDC_last_update": "2018-03-09T04:10:29Z", "INSDC_status": "public", "Submitter_Id": "2769STDY6182411-sc-2382183", "common_name": "house mouse", "sample_name": "2769STDY6182411-sc-2382183", "scientific_name": "Mus musculus"}
ERX371615 iPSC 0.608 2.7 25162 2075.2 0 0.0 532 42484.6 0.996 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-01-07T10:46:12Z", "ENA-LAST-UPDATE": "2018-03-08T16:43:34Z", "External_Id": "SAMEA2189560", "INSDC_center_name": "SC", "INSDC_first_public": "2014-01-07T10:46:12Z", "INSDC_last_update": "2018-03-08T16:43:34Z", "INSDC_status": "public", "Submitter_Id": "iPSC29_BS-sc-2013-09-18T12:30:24Z-1692910", "common_name": "house mouse", "description": "DNA from iPSC", "sample_name": "iPSC29_BS-sc-2013-09-18T12:30:24Z-1692910", "scientific_name": "Mus musculus"}
ERX371616 iPSC 0.277 2.7 2 850454.5 0 0.0 0 0.0 0.997 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-01-07T10:46:12Z", "ENA-LAST-UPDATE": "2018-03-08T16:42:53Z", "External_Id": "SAMEA2189559", "INSDC_center_name": "SC", "INSDC_first_public": "2014-01-07T10:46:12Z", "INSDC_last_update": "2018-03-08T16:42:53Z", "INSDC_status": "public", "Submitter_Id": "iPSC28_BS-sc-2013-09-18T12:30:17Z-1692909", "common_name": "house mouse", "description": "DNA from iPSC", "sample_name": "iPSC28_BS-sc-2013-09-18T12:30:17Z-1692909", "scientific_name": "Mus musculus"}
ERX371617 iPSC 0.637 2.6 23770 1709.5 0 0.0 538 34189.3 0.995 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-01-07T10:46:12Z", "ENA-LAST-UPDATE": "2018-03-08T16:42:53Z", "External_Id": "SAMEA2189554", "INSDC_center_name": "SC", "INSDC_first_public": "2014-01-07T10:46:12Z", "INSDC_last_update": "2018-03-08T16:42:53Z", "INSDC_status": "public", "Submitter_Id": "iPSC27_BS-sc-2013-09-18T12:28:40Z-1692908", "common_name": "house mouse", "description": "DNA from iPSC", "sample_name": "iPSC27_BS-sc-2013-09-18T12:28:40Z-1692908", "scientific_name": "Mus musculus"}
ERX371618 iPSC 0.593 2.1 23029 2781.0 0 0.0 571 61797.4 0.996 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-01-07T10:46:12Z", "ENA-LAST-UPDATE": "2018-03-08T16:43:34Z", "External_Id": "SAMEA2189557", "INSDC_center_name": "SC", "INSDC_first_public": "2014-01-07T10:46:12Z", "INSDC_last_update": "2018-03-08T16:43:34Z", "INSDC_status": "public", "Submitter_Id": "iPSC29_oxBS-sc-2013-09-18T12:30:03Z-1692913", "common_name": "house mouse", "description": "DNA from iPSC", "sample_name": "iPSC29_oxBS-sc-2013-09-18T12:30:03Z-1692913", "scientific_name": "Mus musculus"}
ERX371619 iPSC 0.262 2.1 1 730206.0 0 0.0 1 33790000.0 0.997 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-01-07T10:46:12Z", "ENA-LAST-UPDATE": "2018-03-08T16:43:34Z", "External_Id": "SAMEA2189556", "INSDC_center_name": "SC", "INSDC_first_public": "2014-01-07T10:46:12Z", "INSDC_last_update": "2018-03-08T16:43:34Z", "INSDC_status": "public", "Submitter_Id": "iPSC28_oxBS-sc-2013-09-18T12:29:53Z-1692912", "common_name": "house mouse", "description": "DNA from iPSC", "sample_name": "iPSC28_oxBS-sc-2013-09-18T12:29:53Z-1692912", "scientific_name": "Mus musculus"}
ERX371620 iPSC 0.625 2.1 22200 2141.5 0 0.0 367 51320.3 0.995 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-01-07T10:46:12Z", "ENA-LAST-UPDATE": "2018-03-08T16:43:34Z", "External_Id": "SAMEA2189555", "INSDC_center_name": "SC", "INSDC_first_public": "2014-01-07T10:46:12Z", "INSDC_last_update": "2018-03-08T16:43:34Z", "INSDC_status": "public", "Submitter_Id": "iPSC27_oxBS-sc-2013-09-18T12:29:46Z-1692911", "common_name": "house mouse", "description": "DNA from iPSC", "sample_name": "iPSC27_oxBS-sc-2013-09-18T12:29:46Z-1692911", "scientific_name": "Mus musculus"}
ERX371621 ESC 0.730 5.5 31315 1268.5 25 991.0 1806 14986.4 0.994 title: Illumina HiSeq 2000 paired end sequencing; {"ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-01-07T10:46:12Z", "ENA-LAST-UPDATE": "2018-03-08T16:43:34Z", "External_Id": "SAMEA2189552", "INSDC_center_name": "SC", "INSDC_first_public": "2014-01-07T10:46:12Z", "INSDC_last_update": "2018-03-08T16:43:34Z", "INSDC_status": "public", "Submitter_Id": "TMBD10_BS-sc-2013-09-18T12:28:21Z-1692906", "common_name": "house mouse", "description": "DNA from ESC", "sample_name": "TMBD10_BS-sc-2013-09-18T12:28:21Z-1692906", "scientific_name": "Mus musculus"}
ERX371622 ESC 0.716 4.3 31698 1340.0 28 1129.8 1263 23330.6 0.994 title: Illumina HiSeq 2000 paired end sequencing; {"ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-01-07T10:46:12Z", "ENA-LAST-UPDATE": "2018-03-08T16:43:34Z", "External_Id": "SAMEA2189553", "INSDC_center_name": "SC", "INSDC_first_public": "2014-01-07T10:46:12Z", "INSDC_last_update": "2018-03-08T16:43:34Z", "INSDC_status": "public", "Submitter_Id": "TMBD10_oxBS-sc-2013-09-18T12:28:31Z-1692907", "common_name": "house mouse", "description": "DNA from ESC", "sample_name": "TMBD10_oxBS-sc-2013-09-18T12:28:31Z-1692907", "scientific_name": "Mus musculus"}
ERX371623 iPSC 0.625 2.1 21129 2178.0 0 0.0 401 45059.4 0.996 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-01-07T10:46:12Z", "ENA-LAST-UPDATE": "2018-03-08T16:43:34Z", "External_Id": "SAMEA2189566", "INSDC_center_name": "SC", "INSDC_first_public": "2014-01-07T10:46:12Z", "INSDC_last_update": "2018-03-08T16:43:34Z", "INSDC_status": "public", "Submitter_Id": "iPSC38_BS-sc-2013-09-18T12:31:20Z-1692917", "common_name": "house mouse", "description": "DNA from iPSC", "sample_name": "iPSC38_BS-sc-2013-09-18T12:31:20Z-1692917", "scientific_name": "Mus musculus"}
ERX371624 iPSC 0.647 2.1 22522 1923.6 0 0.0 239 50856.8 0.995 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-01-07T10:46:12Z", "ENA-LAST-UPDATE": "2018-03-08T16:42:53Z", "External_Id": "SAMEA2189565", "INSDC_center_name": "SC", "INSDC_first_public": "2014-01-07T10:46:12Z", "INSDC_last_update": "2018-03-08T16:42:53Z", "INSDC_status": "public", "Submitter_Id": "iPSC37_BS-sc-2013-09-18T12:31:14Z-1692916", "common_name": "house mouse", "description": "DNA from iPSC", "sample_name": "iPSC37_BS-sc-2013-09-18T12:31:14Z-1692916", "scientific_name": "Mus musculus"}
ERX371625 iPSC 0.560 1.8 20203 2083.3 1 568.0 0 0.0 0.996 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-01-07T10:46:12Z", "ENA-LAST-UPDATE": "2018-03-08T16:43:34Z", "External_Id": "SAMEA2189564", "INSDC_center_name": "SC", "INSDC_first_public": "2014-01-07T10:46:12Z", "INSDC_last_update": "2018-03-08T16:43:34Z", "INSDC_status": "public", "Submitter_Id": "iPSC20_BS-sc-2013-09-18T12:31:06Z-1692915", "common_name": "house mouse", "description": "DNA from iPSC", "sample_name": "iPSC20_BS-sc-2013-09-18T12:31:06Z-1692915", "scientific_name": "Mus musculus"}
ERX371626 iPSC 0.640 1.9 22521 2165.8 0 0.0 353 63057.1 0.994 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-01-07T10:46:12Z", "ENA-LAST-UPDATE": "2018-03-08T16:43:34Z", "External_Id": "SAMEA2189558", "INSDC_center_name": "SC", "INSDC_first_public": "2014-01-07T10:46:12Z", "INSDC_last_update": "2018-03-08T16:43:34Z", "INSDC_status": "public", "Submitter_Id": "iPSC19_BS-sc-2013-09-18T12:30:10Z-1692914", "common_name": "house mouse", "description": "DNA from iPSC", "sample_name": "iPSC19_BS-sc-2013-09-18T12:30:10Z-1692914", "scientific_name": "Mus musculus"}
ERX371627 iPSC 0.616 1.9 20843 2416.8 0 0.0 312 62697.8 0.996 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-01-07T10:46:12Z", "ENA-LAST-UPDATE": "2018-03-08T16:43:34Z", "External_Id": "SAMEA2189563", "INSDC_center_name": "SC", "INSDC_first_public": "2014-01-07T10:46:12Z", "INSDC_last_update": "2018-03-08T16:43:34Z", "INSDC_status": "public", "Submitter_Id": "iPSC38_oxBS-sc-2013-09-18T12:30:43Z-1692921", "common_name": "house mouse", "description": "DNA from iPSC", "sample_name": "iPSC38_oxBS-sc-2013-09-18T12:30:43Z-1692921", "scientific_name": "Mus musculus"}
ERX371628 iPSC 0.637 1.9 21910 2165.8 0 0.0 350 55387.9 0.995 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-01-07T10:46:12Z", "ENA-LAST-UPDATE": "2018-03-08T16:42:53Z", "External_Id": "SAMEA2189562", "INSDC_center_name": "SC", "INSDC_first_public": "2014-01-07T10:46:12Z", "INSDC_last_update": "2018-03-08T16:42:53Z", "INSDC_status": "public", "Submitter_Id": "iPSC37_oxBS-sc-2013-09-18T12:30:37Z-1692920", "common_name": "house mouse", "description": "DNA from iPSC", "sample_name": "iPSC37_oxBS-sc-2013-09-18T12:30:37Z-1692920", "scientific_name": "Mus musculus"}
ERX371629 iPSC 0.552 1.7 20047 2096.0 1 674.0 0 0.0 0.997 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-01-07T10:46:12Z", "ENA-LAST-UPDATE": "2018-03-08T16:43:34Z", "External_Id": "SAMEA2189561", "INSDC_center_name": "SC", "INSDC_first_public": "2014-01-07T10:46:12Z", "INSDC_last_update": "2018-03-08T16:43:34Z", "INSDC_status": "public", "Submitter_Id": "iPSC20_oxBS-sc-2013-09-18T12:30:31Z-1692919", "common_name": "house mouse", "description": "DNA from iPSC", "sample_name": "iPSC20_oxBS-sc-2013-09-18T12:30:31Z-1692919", "scientific_name": "Mus musculus"}
ERX371630 iPSC 0.626 1.8 21635 2473.1 0 0.0 497 70369.2 0.994 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-01-07T10:46:12Z", "ENA-LAST-UPDATE": "2018-03-08T16:43:34Z", "External_Id": "SAMEA2189567", "INSDC_center_name": "SC", "INSDC_first_public": "2014-01-07T10:46:12Z", "INSDC_last_update": "2018-03-08T16:43:34Z", "INSDC_status": "public", "Submitter_Id": "iPSC19_oxBS-sc-2013-09-18T12:31:26Z-1692918", "common_name": "house mouse", "description": "DNA from iPSC", "sample_name": "iPSC19_oxBS-sc-2013-09-18T12:31:26Z-1692918", "scientific_name": "Mus musculus"}
ERX371631 MEF 0.620 3.5 26928 1582.9 0 0.0 330 23373.7 0.999 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-01-07T10:46:12Z", "ENA-LAST-UPDATE": "2018-03-08T16:42:59Z", "External_Id": "SAMEA2189568", "INSDC_center_name": "SC", "INSDC_first_public": "2014-01-07T10:46:12Z", "INSDC_last_update": "2018-03-08T16:42:59Z", "INSDC_status": "public", "Submitter_Id": "pMEFWt_BS-sc-2013-09-18T12:31:34Z-1692922", "common_name": "house mouse", "description": "DNA from MEF", "sample_name": "pMEFWt_BS-sc-2013-09-18T12:31:34Z-1692922", "scientific_name": "Mus musculus"}
ERX371632 MEF 0.641 4.1 27428 1437.0 2 907.5 398 23093.3 0.999 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-01-07T10:46:12Z", "ENA-LAST-UPDATE": "2018-03-08T16:43:34Z", "External_Id": "SAMEA2189569", "INSDC_center_name": "SC", "INSDC_first_public": "2014-01-07T10:46:12Z", "INSDC_last_update": "2018-03-08T16:43:34Z", "INSDC_status": "public", "Submitter_Id": "pMEFAIDKO_BS-sc-2013-09-18T12:31:41Z-1692923", "common_name": "house mouse", "description": "DNA from MEF", "sample_name": "pMEFAIDKO_BS-sc-2013-09-18T12:31:41Z-1692923", "scientific_name": "Mus musculus"}
ERX371633 MEF 0.614 3.1 24653 1794.6 0 0.0 286 26848.5 0.999 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-01-07T10:46:12Z", "ENA-LAST-UPDATE": "2018-03-08T16:42:35Z", "External_Id": "SAMEA2189570", "INSDC_center_name": "SC", "INSDC_first_public": "2014-01-07T10:46:12Z", "INSDC_last_update": "2018-03-08T16:42:35Z", "INSDC_status": "public", "Submitter_Id": "pMEFWt_oxBS-sc-2013-09-18T12:31:48Z-1692924", "common_name": "house mouse", "description": "DNA from MEF", "sample_name": "pMEFWt_oxBS-sc-2013-09-18T12:31:48Z-1692924", "scientific_name": "Mus musculus"}
ERX371634 MEF 0.639 3.6 27083 1495.1 4 973.8 407 21962.9 0.999 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-01-07T10:46:12Z", "ENA-LAST-UPDATE": "2018-03-08T16:42:59Z", "External_Id": "SAMEA2189571", "INSDC_center_name": "SC", "INSDC_first_public": "2014-01-07T10:46:12Z", "INSDC_last_update": "2018-03-08T16:42:59Z", "INSDC_status": "public", "Submitter_Id": "pMEFAIDKO_oxBS-sc-2013-09-18T12:31:54Z-1692925", "common_name": "house mouse", "description": "DNA from MEF", "sample_name": "pMEFAIDKO_oxBS-sc-2013-09-18T12:31:54Z-1692925", "scientific_name": "Mus musculus"}
ERX502124 MEF 0.615 2.5 21569 2094.5 0 0.0 320 31663.7 0.999 title: Illumina HiSeq 2000 paired end sequencing; {"ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-06-16T11:43:45Z", "ENA-LAST-UPDATE": "2018-03-08T17:11:44Z", "External_Id": "SAMEA2361784", "INSDC_center_name": "SC", "INSDC_first_public": "2014-06-16T11:43:45Z", "INSDC_last_update": "2018-03-08T17:11:44Z", "INSDC_status": "public", "Submitter_Id": "BSeq_MEF1-sc-1861756", "common_name": "house mouse", "description": "DNA from MEF", "sample_name": "BSeq_MEF1-sc-1861756", "scientific_name": "Mus musculus"}
ERX502125 MEF 0.633 2.4 25943 1853.7 0 0.0 398 31181.0 0.999 title: Illumina HiSeq 2000 paired end sequencing; {"ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-06-16T11:43:45Z", "ENA-LAST-UPDATE": "2018-03-08T17:11:44Z", "External_Id": "SAMEA2361785", "INSDC_center_name": "SC", "INSDC_first_public": "2014-06-16T11:43:45Z", "INSDC_last_update": "2018-03-08T17:11:44Z", "INSDC_status": "public", "Submitter_Id": "BSeq_MEF2-sc-1861757", "common_name": "house mouse", "description": "DNA from MEF", "sample_name": "BSeq_MEF2-sc-1861757", "scientific_name": "Mus musculus"}
ERX502126 MEF 0.619 2.5 24259 1918.7 0 0.0 288 31985.3 0.999 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-06-16T11:43:45Z", "ENA-LAST-UPDATE": "2018-03-08T17:11:54Z", "External_Id": "SAMEA2361786", "INSDC_center_name": "SC", "INSDC_first_public": "2014-06-16T11:43:45Z", "INSDC_last_update": "2018-03-08T17:11:54Z", "INSDC_status": "public", "Submitter_Id": "BSeq_MEF3-sc-1861758", "common_name": "house mouse", "description": "DNA from MEF", "sample_name": "BSeq_MEF3-sc-1861758", "scientific_name": "Mus musculus"}
ERX502127 ESC 0.635 2.5 25540 1721.2 0 0.0 331 42929.1 0.994 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-06-16T11:43:45Z", "ENA-LAST-UPDATE": "2018-03-08T17:11:45Z", "External_Id": "SAMEA2361787", "INSDC_center_name": "SC", "INSDC_first_public": "2014-06-16T11:43:45Z", "INSDC_last_update": "2018-03-08T17:11:45Z", "INSDC_status": "public", "Submitter_Id": "BSeq_TMBD1-sc-1861759", "common_name": "house mouse", "description": "DNA from ESC", "sample_name": "BSeq_TMBD1-sc-1861759", "scientific_name": "Mus musculus"}
ERX502128 ESC 0.665 2.2 23430 1646.6 0 0.0 410 39782.9 0.995 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-06-16T11:43:44Z", "ENA-LAST-UPDATE": "2018-03-08T17:11:45Z", "External_Id": "SAMEA2361788", "INSDC_center_name": "SC", "INSDC_first_public": "2014-06-16T11:43:44Z", "INSDC_last_update": "2018-03-08T17:11:45Z", "INSDC_status": "public", "Submitter_Id": "BSeq_TMBD2-sc-1861760", "common_name": "house mouse", "description": "DNA from ESC", "sample_name": "BSeq_TMBD2-sc-1861760", "scientific_name": "Mus musculus"}
ERX502129 ESC 0.661 2.5 24822 1547.8 1 1733.0 312 38651.4 0.995 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-06-16T11:43:45Z", "ENA-LAST-UPDATE": "2018-03-08T17:11:54Z", "External_Id": "SAMEA2361789", "INSDC_center_name": "SC", "INSDC_first_public": "2014-06-16T11:43:45Z", "INSDC_last_update": "2018-03-08T17:11:54Z", "INSDC_status": "public", "Submitter_Id": "BSeq_TMBD3-sc-1861761", "common_name": "house mouse", "description": "DNA from ESC", "sample_name": "BSeq_TMBD3-sc-1861761", "scientific_name": "Mus musculus"}
ERX502130 MEF 0.609 2.3 20908 2289.3 0 0.0 198 43181.9 0.999 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-06-16T11:43:45Z", "ENA-LAST-UPDATE": "2018-03-08T17:11:45Z", "External_Id": "SAMEA2361790", "INSDC_center_name": "SC", "INSDC_first_public": "2014-06-16T11:43:45Z", "INSDC_last_update": "2018-03-08T17:11:45Z", "INSDC_status": "public", "Submitter_Id": "oxBSeq_MEF1-sc-1861762", "common_name": "house mouse", "description": "DNA from MEF", "sample_name": "oxBSeq_MEF1-sc-1861762", "scientific_name": "Mus musculus"}
ERX502131 MEF 0.628 2.3 23705 1993.3 0 0.0 344 36251.8 0.999 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-06-16T11:43:44Z", "ENA-LAST-UPDATE": "2018-03-08T17:11:45Z", "External_Id": "SAMEA2361791", "INSDC_center_name": "SC", "INSDC_first_public": "2014-06-16T11:43:44Z", "INSDC_last_update": "2018-03-08T17:11:45Z", "INSDC_status": "public", "Submitter_Id": "oxBSeq_MEF2-sc-1861763", "common_name": "house mouse", "description": "DNA from MEF", "sample_name": "oxBSeq_MEF2-sc-1861763", "scientific_name": "Mus musculus"}
ERX502132 MEF 0.617 2.4 22875 2032.8 0 0.0 318 30661.2 0.999 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-06-16T11:43:44Z", "ENA-LAST-UPDATE": "2018-03-08T17:11:54Z", "External_Id": "SAMEA2361792", "INSDC_center_name": "SC", "INSDC_first_public": "2014-06-16T11:43:44Z", "INSDC_last_update": "2018-03-08T17:11:54Z", "INSDC_status": "public", "Submitter_Id": "oxBSeq_MEF3-sc-1861764", "common_name": "house mouse", "description": "DNA from MEF", "sample_name": "oxBSeq_MEF3-sc-1861764", "scientific_name": "Mus musculus"}
ERX502133 ESC 0.627 2.1 23572 2031.1 0 0.0 366 56212.7 0.994 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-06-16T11:43:45Z", "ENA-LAST-UPDATE": "2018-03-08T17:11:45Z", "External_Id": "SAMEA2361793", "INSDC_center_name": "SC", "INSDC_first_public": "2014-06-16T11:43:45Z", "INSDC_last_update": "2018-03-08T17:11:45Z", "INSDC_status": "public", "Submitter_Id": "oxBSeq_TMBD1-sc-1861765", "common_name": "house mouse", "description": "DNA from ESC", "sample_name": "oxBSeq_TMBD1-sc-1861765", "scientific_name": "Mus musculus"}
ERX502134 ESC 0.653 2.2 24508 1662.7 1 1097.0 448 39933.2 0.995 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-06-16T11:43:45Z", "ENA-LAST-UPDATE": "2018-03-08T17:11:45Z", "External_Id": "SAMEA2361794", "INSDC_center_name": "SC", "INSDC_first_public": "2014-06-16T11:43:45Z", "INSDC_last_update": "2018-03-08T17:11:45Z", "INSDC_status": "public", "Submitter_Id": "oxBSeq_TMBD2-sc-1861766", "common_name": "house mouse", "description": "DNA from ESC", "sample_name": "oxBSeq_TMBD2-sc-1861766", "scientific_name": "Mus musculus"}
ERX502135 ESC 0.648 2.3 24402 1691.6 2 968.5 457 41356.1 0.995 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-06-16T11:43:45Z", "ENA-LAST-UPDATE": "2018-03-08T17:11:54Z", "External_Id": "SAMEA2361795", "INSDC_center_name": "SC", "INSDC_first_public": "2014-06-16T11:43:45Z", "INSDC_last_update": "2018-03-08T17:11:54Z", "INSDC_status": "public", "Submitter_Id": "oxBSeq_TMBD3-sc-1861767", "common_name": "house mouse", "description": "DNA from ESC", "sample_name": "oxBSeq_TMBD3-sc-1861767", "scientific_name": "Mus musculus"}
ERX502136 iPSC 0.596 2.2 19882 3084.5 0 0.0 424 1773914.8 0.999 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-06-16T11:43:45Z", "ENA-LAST-UPDATE": "2018-03-08T17:11:45Z", "External_Id": "SAMEA2361796", "INSDC_center_name": "SC", "INSDC_first_public": "2014-06-16T11:43:45Z", "INSDC_last_update": "2018-03-08T17:11:45Z", "INSDC_status": "public", "Submitter_Id": "BSeq_T_S_Exp10-sc-1861768", "common_name": "house mouse", "description": "DNA from iPSC", "sample_name": "BSeq_T_S_Exp10-sc-1861768", "scientific_name": "Mus musculus"}
ERX502137 iPSC 0.600 2.3 19764 2637.5 0 0.0 160 57899.2 0.999 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-06-16T11:43:45Z", "ENA-LAST-UPDATE": "2018-03-08T17:11:54Z", "External_Id": "SAMEA2361798", "INSDC_center_name": "SC", "INSDC_first_public": "2014-06-16T11:43:45Z", "INSDC_last_update": "2018-03-08T17:11:54Z", "INSDC_status": "public", "Submitter_Id": "BSeq_T_S_Exp11-sc-1861770", "common_name": "house mouse", "description": "DNA from iPSC", "sample_name": "BSeq_T_S_Exp11-sc-1861770", "scientific_name": "Mus musculus"}
ERX502138 iPSC 0.591 2.3 19440 3172.1 0 0.0 513 1489791.6 0.999 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-06-16T11:43:44Z", "ENA-LAST-UPDATE": "2018-03-08T17:11:53Z", "External_Id": "SAMEA2361800", "INSDC_center_name": "SC", "INSDC_first_public": "2014-06-16T11:43:44Z", "INSDC_last_update": "2018-03-08T17:11:53Z", "INSDC_status": "public", "Submitter_Id": "BSeq_T_S_Exp16-sc-1861772", "common_name": "house mouse", "description": "DNA from iPSC", "sample_name": "BSeq_T_S_Exp16-sc-1861772", "scientific_name": "Mus musculus"}
ERX502139 iPSC 0.565 2.2 18683 3640.9 1 928.0 533 1313128.5 0.999 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-06-16T11:43:45Z", "ENA-LAST-UPDATE": "2018-03-08T17:11:45Z", "External_Id": "SAMEA2361797", "INSDC_center_name": "SC", "INSDC_first_public": "2014-06-16T11:43:45Z", "INSDC_last_update": "2018-03-08T17:11:45Z", "INSDC_status": "public", "Submitter_Id": "BSeq_T_S_Exp10-sc-1861769", "common_name": "house mouse", "description": "DNA from iPSC", "sample_name": "BSeq_T_S_Exp10-sc-1861769", "scientific_name": "Mus musculus"}
ERX502140 iPSC 0.578 2.2 18639 3127.8 0 0.0 745 445530.1 0.999 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-06-16T11:43:45Z", "ENA-LAST-UPDATE": "2018-03-08T17:11:53Z", "External_Id": "SAMEA2361799", "INSDC_center_name": "SC", "INSDC_first_public": "2014-06-16T11:43:45Z", "INSDC_last_update": "2018-03-08T17:11:53Z", "INSDC_status": "public", "Submitter_Id": "BSeq_T_S_Exp11-sc-1861771", "common_name": "house mouse", "description": "DNA from iPSC", "sample_name": "BSeq_T_S_Exp11-sc-1861771", "scientific_name": "Mus musculus"}
ERX502141 iPSC 0.569 2.1 18291 3635.4 0 0.0 521 1354801.7 0.999 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-06-16T11:43:45Z", "ENA-LAST-UPDATE": "2018-03-08T17:11:54Z", "External_Id": "SAMEA2361801", "INSDC_center_name": "SC", "INSDC_first_public": "2014-06-16T11:43:45Z", "INSDC_last_update": "2018-03-08T17:11:54Z", "INSDC_status": "public", "Submitter_Id": "BSeq_T_S_Exp16-sc-1861773", "common_name": "house mouse", "description": "DNA from iPSC", "sample_name": "BSeq_T_S_Exp16-sc-1861773", "scientific_name": "Mus musculus"}
ERX502142 iPSC 0.591 2.1 19180 3127.5 0 0.0 373 1875856.4 0.999 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-06-16T11:43:45Z", "ENA-LAST-UPDATE": "2018-03-08T17:11:53Z", "External_Id": "SAMEA2361802", "INSDC_center_name": "SC", "INSDC_first_public": "2014-06-16T11:43:45Z", "INSDC_last_update": "2018-03-08T17:11:53Z", "INSDC_status": "public", "Submitter_Id": "oxBSeq_T_S_Exp10-sc-1861774", "common_name": "house mouse", "description": "DNA from iPSC", "sample_name": "oxBSeq_T_S_Exp10-sc-1861774", "scientific_name": "Mus musculus"}
ERX502143 iPSC 0.597 2.1 19163 2779.1 0 0.0 108 82896.6 0.999 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-06-16T11:43:45Z", "ENA-LAST-UPDATE": "2018-03-08T17:11:54Z", "External_Id": "SAMEA2361804", "INSDC_center_name": "SC", "INSDC_first_public": "2014-06-16T11:43:45Z", "INSDC_last_update": "2018-03-08T17:11:54Z", "INSDC_status": "public", "Submitter_Id": "oxBSeq_T_S_Exp11-sc-1861776", "common_name": "house mouse", "description": "DNA from iPSC", "sample_name": "oxBSeq_T_S_Exp11-sc-1861776", "scientific_name": "Mus musculus"}
ERX502144 iPSC 0.588 2.3 19200 3203.0 0 0.0 489 1531601.1 0.999 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-06-16T11:43:44Z", "ENA-LAST-UPDATE": "2018-03-08T17:11:53Z", "External_Id": "SAMEA2361806", "INSDC_center_name": "SC", "INSDC_first_public": "2014-06-16T11:43:44Z", "INSDC_last_update": "2018-03-08T17:11:53Z", "INSDC_status": "public", "Submitter_Id": "oxBSeq_T_S_Exp16-sc-1861778", "common_name": "house mouse", "description": "DNA from iPSC", "sample_name": "oxBSeq_T_S_Exp16-sc-1861778", "scientific_name": "Mus musculus"}
ERX502145 iPSC 0.555 2.2 18193 3623.3 1 901.0 560 1205334.1 0.999 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-06-16T11:43:44Z", "ENA-LAST-UPDATE": "2018-03-08T17:11:53Z", "External_Id": "SAMEA2361803", "INSDC_center_name": "SC", "INSDC_first_public": "2014-06-16T11:43:44Z", "INSDC_last_update": "2018-03-08T17:11:53Z", "INSDC_status": "public", "Submitter_Id": "oxBSeq_T_S_Exp10-sc-1861775", "common_name": "house mouse", "description": "DNA from iPSC", "sample_name": "oxBSeq_T_S_Exp10-sc-1861775", "scientific_name": "Mus musculus"}
ERX502146 iPSC 0.566 2.2 18298 3229.7 1 584.0 383 165477.1 0.999 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-06-16T11:43:44Z", "ENA-LAST-UPDATE": "2018-03-08T17:11:53Z", "External_Id": "SAMEA2361805", "INSDC_center_name": "SC", "INSDC_first_public": "2014-06-16T11:43:44Z", "INSDC_last_update": "2018-03-08T17:11:53Z", "INSDC_status": "public", "Submitter_Id": "oxBSeq_T_S_Exp11-sc-1861777", "common_name": "house mouse", "description": "DNA from iPSC", "sample_name": "oxBSeq_T_S_Exp11-sc-1861777", "scientific_name": "Mus musculus"}
ERX502147 iPSC 0.557 2.2 18464 3713.7 0 0.0 562 1208502.1 0.999 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-06-16T11:43:44Z", "ENA-LAST-UPDATE": "2018-03-08T17:11:54Z", "External_Id": "SAMEA2361807", "INSDC_center_name": "SC", "INSDC_first_public": "2014-06-16T11:43:44Z", "INSDC_last_update": "2018-03-08T17:11:54Z", "INSDC_status": "public", "Submitter_Id": "oxBSeq_T_S_Exp16-sc-1861779", "common_name": "house mouse", "description": "DNA from iPSC", "sample_name": "oxBSeq_T_S_Exp16-sc-1861779", "scientific_name": "Mus musculus"}
ERX502151 iPSC 0.393 1.5 1 655133.0 0 0.0 21 9304185.1 0.996 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-06-16T11:43:45Z", "ENA-LAST-UPDATE": "2018-03-08T17:11:53Z", "External_Id": "SAMEA2361811", "INSDC_center_name": "SC", "INSDC_first_public": "2014-06-16T11:43:45Z", "INSDC_last_update": "2018-03-08T17:11:53Z", "INSDC_status": "public", "Submitter_Id": "BSeq_P8_iPSC67-sc-1861783", "common_name": "house mouse", "description": "DNA from iPSC", "sample_name": "BSeq_P8_iPSC67-sc-1861783", "scientific_name": "Mus musculus"}
ERX502153 iPSC 0.431 1.5 1 672916.0 0 0.0 96 213249.2 0.996 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-06-16T11:43:44Z", "ENA-LAST-UPDATE": "2018-03-08T17:11:54Z", "External_Id": "SAMEA2361813", "INSDC_center_name": "SC", "INSDC_first_public": "2014-06-16T11:43:44Z", "INSDC_last_update": "2018-03-08T17:11:54Z", "INSDC_status": "public", "Submitter_Id": "BSeq_P8_iPSC73-sc-1861785", "common_name": "house mouse", "description": "DNA from iPSC", "sample_name": "BSeq_P8_iPSC73-sc-1861785", "scientific_name": "Mus musculus"}
ERX622633 MEF 0.195 1.5 1 631824.0 0 0.0 1 109669217.0 0.998 title: Illumina HiSeq 2000 paired end sequencing; {"ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-11-04T16:18:36Z", "ENA-LAST-UPDATE": "2018-03-08T19:03:48Z", "External_Id": "SAMEA2633691", "INSDC_center_name": "SC", "INSDC_first_public": "2014-11-04T16:18:36Z", "INSDC_last_update": "2018-03-08T19:03:48Z", "INSDC_status": "public", "Submitter_Id": "BSeq_P29_iPSC44-sc-2014730", "common_name": "house mouse", "description": "DNA from MEF", "sample_name": "BSeq_P29_iPSC44-sc-2014730", "scientific_name": "Mus musculus"}
ERX622635 MEF 0.554 1.6 22734 2953.7 0 0.0 441 102173.3 0.997 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-11-04T16:18:36Z", "ENA-LAST-UPDATE": "2018-03-08T20:10:43Z", "External_Id": "SAMEA2633693", "INSDC_center_name": "SC", "INSDC_first_public": "2014-11-04T16:18:36Z", "INSDC_last_update": "2018-03-08T20:10:43Z", "INSDC_status": "public", "Submitter_Id": "BSeq_P29_iPSC66-sc-2014732", "common_name": "house mouse", "description": "DNA from MEF", "sample_name": "BSeq_P29_iPSC66-sc-2014732", "scientific_name": "Mus musculus"}
ERX622636 ESC 0.443 1.4 0 0.0 0 0.0 241 198054.5 0.998 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-11-04T16:18:36Z", "ENA-LAST-UPDATE": "2018-03-08T19:03:49Z", "External_Id": "SAMEA2633694", "INSDC_center_name": "SC", "INSDC_first_public": "2014-11-04T16:18:36Z", "INSDC_last_update": "2018-03-08T19:03:49Z", "INSDC_status": "public", "Submitter_Id": "BSeq_P29_iPSC67-sc-2014733", "common_name": "house mouse", "description": "DNA from ESC", "sample_name": "BSeq_P29_iPSC67-sc-2014733", "scientific_name": "Mus musculus"}
ERX622637 ESC 0.562 1.5 23406 2275.7 0 0.0 200 110536.4 0.996 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-11-04T16:18:36Z", "ENA-LAST-UPDATE": "2018-03-08T19:48:11Z", "External_Id": "SAMEA2633695", "INSDC_center_name": "SC", "INSDC_first_public": "2014-11-04T16:18:36Z", "INSDC_last_update": "2018-03-08T19:48:11Z", "INSDC_status": "public", "Submitter_Id": "BSeq_P29_iPSC72-sc-2014734", "common_name": "house mouse", "description": "DNA from ESC", "sample_name": "BSeq_P29_iPSC72-sc-2014734", "scientific_name": "Mus musculus"}
ERX622638 ESC 0.277 1.5 0 0.0 0 0.0 745 1648693.8 1.000 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-11-04T16:18:36Z", "ENA-LAST-UPDATE": "2018-03-08T20:10:43Z", "External_Id": "SAMEA2633696", "INSDC_center_name": "SC", "INSDC_first_public": "2014-11-04T16:18:36Z", "INSDC_last_update": "2018-03-08T20:10:43Z", "INSDC_status": "public", "Submitter_Id": "BSeq_P29_iPSC73-sc-2014735", "common_name": "house mouse", "description": "DNA from ESC", "sample_name": "BSeq_P29_iPSC73-sc-2014735", "scientific_name": "Mus musculus"}
ERX625586 MEF 0.188 1.5 1 714527.0 0 0.0 0 0.0 0.998 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-11-11T09:56:56Z", "ENA-LAST-UPDATE": "2018-03-08T19:03:49Z", "External_Id": "SAMEA2633697", "INSDC_center_name": "SC", "INSDC_first_public": "2014-11-11T09:56:56Z", "INSDC_last_update": "2018-03-08T19:03:49Z", "INSDC_status": "public", "Submitter_Id": "oxBSeq_P29_iPSC44-sc-2014736", "common_name": "house mouse", "description": "DNA from MEF", "sample_name": "oxBSeq_P29_iPSC44-sc-2014736", "scientific_name": "Mus musculus"}
ERX625587 MEF 0.267 1.6 1 838820.0 0 0.0 5 18725852.8 0.998 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-11-11T09:56:56Z", "ENA-LAST-UPDATE": "2018-03-08T19:48:11Z", "External_Id": "SAMEA2633698", "INSDC_center_name": "SC", "INSDC_first_public": "2014-11-11T09:56:56Z", "INSDC_last_update": "2018-03-08T19:48:11Z", "INSDC_status": "public", "Submitter_Id": "oxBSeq_P29_iPSC45-sc-2014737", "common_name": "house mouse", "description": "DNA from MEF", "sample_name": "oxBSeq_P29_iPSC45-sc-2014737", "scientific_name": "Mus musculus"}
ERX625588 MEF 0.540 1.5 23884 3127.2 1 564.0 475 118367.9 0.997 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-11-11T09:56:56Z", "ENA-LAST-UPDATE": "2018-03-08T19:48:11Z", "External_Id": "SAMEA2633702", "INSDC_center_name": "SC", "INSDC_first_public": "2014-11-11T09:56:56Z", "INSDC_last_update": "2018-03-08T19:48:11Z", "INSDC_status": "public", "Submitter_Id": "oxBSeq_P29_iPSC66-sc-2014738", "common_name": "house mouse", "description": "DNA from MEF", "sample_name": "oxBSeq_P29_iPSC66-sc-2014738", "scientific_name": "Mus musculus"}
ERX625589 ESC 0.424 1.5 2 642479.5 0 0.0 467 190628.7 0.998 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-11-11T09:56:56Z", "ENA-LAST-UPDATE": "2018-03-08T20:10:43Z", "External_Id": "SAMEA2633699", "INSDC_center_name": "SC", "INSDC_first_public": "2014-11-11T09:56:56Z", "INSDC_last_update": "2018-03-08T20:10:43Z", "INSDC_status": "public", "Submitter_Id": "oxBSeq_P29_iPSC67-sc-2014739", "common_name": "house mouse", "description": "DNA from ESC", "sample_name": "oxBSeq_P29_iPSC67-sc-2014739", "scientific_name": "Mus musculus"}
ERX625590 ESC 0.552 1.5 23915 2398.2 0 0.0 299 111413.6 0.996 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-11-11T09:56:56Z", "ENA-LAST-UPDATE": "2018-03-08T19:03:49Z", "External_Id": "SAMEA2633700", "INSDC_center_name": "SC", "INSDC_first_public": "2014-11-11T09:56:56Z", "INSDC_last_update": "2018-03-08T19:03:49Z", "INSDC_status": "public", "Submitter_Id": "oxBSeq_P29_iPSC72-sc-2014740", "common_name": "house mouse", "description": "DNA from ESC", "sample_name": "oxBSeq_P29_iPSC72-sc-2014740", "scientific_name": "Mus musculus"}
ERX625591 ESC 0.276 1.6 0 0.0 0 0.0 803 1550549.9 1.000 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-11-11T09:56:56Z", "ENA-LAST-UPDATE": "2018-03-08T19:48:11Z", "External_Id": "SAMEA2633701", "INSDC_center_name": "SC", "INSDC_first_public": "2014-11-11T09:56:56Z", "INSDC_last_update": "2018-03-08T19:48:11Z", "INSDC_status": "public", "Submitter_Id": "oxBSeq_P29_iPSC73-sc-2014741", "common_name": "house mouse", "description": "DNA from ESC", "sample_name": "oxBSeq_P29_iPSC73-sc-2014741", "scientific_name": "Mus musculus"}
ERX634528 MEF 0.190 2.4 2 877087.0 0 0.0 0 0.0 0.998 title: Illumina HiSeq 2000 paired end sequencing; {"ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-11-04T16:18:36Z", "ENA-LAST-UPDATE": "2018-03-08T19:03:48Z", "External_Id": "SAMEA2633691", "INSDC_center_name": "SC", "INSDC_first_public": "2014-11-04T16:18:36Z", "INSDC_last_update": "2018-03-08T19:03:48Z", "INSDC_status": "public", "Submitter_Id": "BSeq_P29_iPSC44-sc-2014730", "common_name": "house mouse", "description": "DNA from MEF", "sample_name": "BSeq_P29_iPSC44-sc-2014730", "scientific_name": "Mus musculus"}
ERX634529 MEF 0.274 2.2 2 857164.5 0 0.0 6 12285332.5 0.998 title: Illumina HiSeq 2000 paired end sequencing; {"ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-11-04T16:18:36Z", "ENA-LAST-UPDATE": "2018-03-08T19:48:11Z", "External_Id": "SAMEA2633692", "INSDC_center_name": "SC", "INSDC_first_public": "2014-11-04T16:18:36Z", "INSDC_last_update": "2018-03-08T19:48:11Z", "INSDC_status": "public", "Submitter_Id": "BSeq_P29_iPSC45-sc-2014731", "common_name": "house mouse", "description": "DNA from MEF", "sample_name": "BSeq_P29_iPSC45-sc-2014731", "scientific_name": "Mus musculus"}
ERX634530 MEF 0.547 2.5 22331 3147.0 0 0.0 494 53685.6 0.997 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-11-04T16:18:36Z", "ENA-LAST-UPDATE": "2018-03-08T20:10:43Z", "External_Id": "SAMEA2633693", "INSDC_center_name": "SC", "INSDC_first_public": "2014-11-04T16:18:36Z", "INSDC_last_update": "2018-03-08T20:10:43Z", "INSDC_status": "public", "Submitter_Id": "BSeq_P29_iPSC66-sc-2014732", "common_name": "house mouse", "description": "DNA from MEF", "sample_name": "BSeq_P29_iPSC66-sc-2014732", "scientific_name": "Mus musculus"}
ERX634531 ESC 0.436 2.3 1671 16184.4 1 670.0 576 74617.0 0.998 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-11-04T16:18:36Z", "ENA-LAST-UPDATE": "2018-03-08T19:03:49Z", "External_Id": "SAMEA2633694", "INSDC_center_name": "SC", "INSDC_first_public": "2014-11-04T16:18:36Z", "INSDC_last_update": "2018-03-08T19:03:49Z", "INSDC_status": "public", "Submitter_Id": "BSeq_P29_iPSC67-sc-2014733", "common_name": "house mouse", "description": "DNA from ESC", "sample_name": "BSeq_P29_iPSC67-sc-2014733", "scientific_name": "Mus musculus"}
ERX634532 ESC 0.554 2.3 21739 2775.3 0 0.0 450 41219.6 0.996 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-11-04T16:18:36Z", "ENA-LAST-UPDATE": "2018-03-08T19:48:11Z", "External_Id": "SAMEA2633695", "INSDC_center_name": "SC", "INSDC_first_public": "2014-11-04T16:18:36Z", "INSDC_last_update": "2018-03-08T19:48:11Z", "INSDC_status": "public", "Submitter_Id": "BSeq_P29_iPSC72-sc-2014734", "common_name": "house mouse", "description": "DNA from ESC", "sample_name": "BSeq_P29_iPSC72-sc-2014734", "scientific_name": "Mus musculus"}
ERX634533 ESC 0.266 2.4 0 0.0 0 0.0 977 1321603.5 0.999 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-11-04T16:18:36Z", "ENA-LAST-UPDATE": "2018-03-08T20:10:43Z", "External_Id": "SAMEA2633696", "INSDC_center_name": "SC", "INSDC_first_public": "2014-11-04T16:18:36Z", "INSDC_last_update": "2018-03-08T20:10:43Z", "INSDC_status": "public", "Submitter_Id": "BSeq_P29_iPSC73-sc-2014735", "common_name": "house mouse", "description": "DNA from ESC", "sample_name": "BSeq_P29_iPSC73-sc-2014735", "scientific_name": "Mus musculus"}
ERX634534 MEF 0.183 2.1 1 915240.0 0 0.0 0 0.0 0.998 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-11-11T09:56:56Z", "ENA-LAST-UPDATE": "2018-03-08T19:03:49Z", "External_Id": "SAMEA2633697", "INSDC_center_name": "SC", "INSDC_first_public": "2014-11-11T09:56:56Z", "INSDC_last_update": "2018-03-08T19:03:49Z", "INSDC_status": "public", "Submitter_Id": "oxBSeq_P29_iPSC44-sc-2014736", "common_name": "house mouse", "description": "DNA from MEF", "sample_name": "oxBSeq_P29_iPSC44-sc-2014736", "scientific_name": "Mus musculus"}
ERX634535 MEF 0.261 2.3 2 965308.5 0 0.0 12 7710416.1 0.998 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-11-11T09:56:56Z", "ENA-LAST-UPDATE": "2018-03-08T19:48:11Z", "External_Id": "SAMEA2633698", "INSDC_center_name": "SC", "INSDC_first_public": "2014-11-11T09:56:56Z", "INSDC_last_update": "2018-03-08T19:48:11Z", "INSDC_status": "public", "Submitter_Id": "oxBSeq_P29_iPSC45-sc-2014737", "common_name": "house mouse", "description": "DNA from MEF", "sample_name": "oxBSeq_P29_iPSC45-sc-2014737", "scientific_name": "Mus musculus"}
ERX634536 MEF 0.531 2.2 22657 3544.2 0 0.0 388 81681.9 0.997 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-11-11T09:56:56Z", "ENA-LAST-UPDATE": "2018-03-08T19:48:11Z", "External_Id": "SAMEA2633702", "INSDC_center_name": "SC", "INSDC_first_public": "2014-11-11T09:56:56Z", "INSDC_last_update": "2018-03-08T19:48:11Z", "INSDC_status": "public", "Submitter_Id": "oxBSeq_P29_iPSC66-sc-2014738", "common_name": "house mouse", "description": "DNA from MEF", "sample_name": "oxBSeq_P29_iPSC66-sc-2014738", "scientific_name": "Mus musculus"}
ERX634537 ESC 0.416 2.1 0 0.0 2 716.5 442 115631.1 0.998 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-11-11T09:56:56Z", "ENA-LAST-UPDATE": "2018-03-08T20:10:43Z", "External_Id": "SAMEA2633699", "INSDC_center_name": "SC", "INSDC_first_public": "2014-11-11T09:56:56Z", "INSDC_last_update": "2018-03-08T20:10:43Z", "INSDC_status": "public", "Submitter_Id": "oxBSeq_P29_iPSC67-sc-2014739", "common_name": "house mouse", "description": "DNA from ESC", "sample_name": "oxBSeq_P29_iPSC67-sc-2014739", "scientific_name": "Mus musculus"}
ERX634538 ESC 0.543 2.1 22294 2927.2 1 502.0 464 54450.5 0.996 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-11-11T09:56:56Z", "ENA-LAST-UPDATE": "2018-03-08T19:03:49Z", "External_Id": "SAMEA2633700", "INSDC_center_name": "SC", "INSDC_first_public": "2014-11-11T09:56:56Z", "INSDC_last_update": "2018-03-08T19:03:49Z", "INSDC_status": "public", "Submitter_Id": "oxBSeq_P29_iPSC72-sc-2014740", "common_name": "house mouse", "description": "DNA from ESC", "sample_name": "oxBSeq_P29_iPSC72-sc-2014740", "scientific_name": "Mus musculus"}
ERX634539 ESC 0.267 2.4 0 0.0 0 0.0 978 1313523.4 0.999 title: Illumina HiSeq 2000 paired end sequencing; {"sex": "female", "ArrayExpress-Species": "Mus Musculus", "ENA-CHECKLIST": "ERC000011", "ENA-FIRST-PUBLIC": "2014-11-11T09:56:56Z", "ENA-LAST-UPDATE": "2018-03-08T19:48:11Z", "External_Id": "SAMEA2633701", "INSDC_center_name": "SC", "INSDC_first_public": "2014-11-11T09:56:56Z", "INSDC_last_update": "2018-03-08T19:48:11Z", "INSDC_status": "public", "Submitter_Id": "oxBSeq_P29_iPSC73-sc-2014741", "common_name": "house mouse", "description": "DNA from ESC", "sample_name": "oxBSeq_P29_iPSC73-sc-2014741", "scientific_name": "Mus musculus"}

Methods

All analysis was done using a bisulfite sequnecing data analysis pipeline DNMTools developed in the Smith lab at USC.

Mapping reads from bisulfite sequencing: Bisulfite treated reads are mapped to the genomes with the abismal program. Input reads are filtered by their quality, and adapter sequences in the 3' end of reads are trimmed. This is done with cutadapt. Uniquely mapped reads with mismatches/indels below given threshold are retained. For pair-end reads, if the two mates overlap, the overlapping part of the mate with lower quality is discarded. After mapping, we use the format command in dnmtools to merge mates for paired-end reads. We use the dnmtools uniq command to randomly select one from multiple reads mapped exactly to the same location. Without random oligos as UMIs, this is our best indication of PCR duplicates.

Estimating methylation levels: After reads are mapped and filtered, the dnmtools counts command is used to obtain read coverage and estimate methylation levels at individual cytosine sites. We count the number of methylated reads (those containing a C) and the number of unmethylated reads (those containing a T) at each nucleotide in a mapped read that corresponds to a cytosine in the reference genome. The methylation level of that cytosine is estimated as the ratio of methylated to total reads covering that cytosine. For cytosines in the symmetric CpG sequence context, reads from the both strands are collapsed to give a single estimate. Very rarely do the levels differ between strands (typically only if there has been a substitution, as in a somatic mutation), and this approach gives a better estimate.

Bisulfite conversion rate: The bisulfite conversion rate for an experiment is estimated with the dnmtools bsrate command, which computes the fraction of successfully converted nucleotides in reads (those read out as Ts) among all nucleotides in the reads mapped that map over cytosines in the reference genome. This is done either using a spike-in (e.g., lambda), the mitochondrial DNA, or the nuclear genome. In the latter case, only non-CpG sites are used. While this latter approach can be impacted by non-CpG cytosine methylation, in practice it never amounts to much.

Identifying hypomethylated regions (HMRs): In most mammalian cells, the majority of the genome has high methylation, and regions of low methylation are typically the interesting features. (This seems to be true for essentially all healthy differentiated cell types, but not cells of very early embryogenesis, various germ cells and precursors, and placental lineage cells.) These are valleys of low methylation are called hypomethylated regions (HMR) for historical reasons. To identify the HMRs, we use the dnmtools hmr command, which uses a statistical model that accounts for both the methylation level fluctations and the varying amounts of data available at each CpG site.

Partially methylated domains: Partially methylated domains are large genomic regions showing partial methylation observed in immortalized cell lines and cancerous cells. The pmd program is used to identify PMDs.

Allele-specific methylation: Allele-Specific methylated regions refers to regions where the parental allele is differentially methylated compared to the maternal allele. The program allelic is used to compute allele-specific methylation score can be computed for each CpG site by testing the linkage between methylation status of adjacent reads, and the program amrfinder is used to identify regions with allele-specific methylation.

For more detailed description of the methods of each step, please refer to the DNMTools documentation.