Annotation Track Settings
 
Annotation   (All Annotation tracks)

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Show only items with score at or above:   (range: 0 to 1000)


Display data as a density graph:

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Description

This track shows the annotation.

The Id of each track can be interpreted by splitting the string on each pipe symbol "|". The fields are:

  1. Annotation type
  2. Conitg/ Plasmid Id
  3. Feature type
  4. Annotation Id

Annotation Details

Annotation Provider NCBI RefSeq
Annotation Date 08/12/2020 16:31:28
Annotation Pipeline NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision 4.12
Features Annotated Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total) 3,101
CDSs (total) 3,018
Genes (coding) 2,971
CDSs (with protein) 2,971
Genes (RNA) 83
rRNAs 6, 6, 6 (5S, 16S, 23S)
complete rRNAs 6, 6, 6 (5S, 16S, 23S)
tRNAs 62
ncRNAs 3
Pseudo Genes (total) 47
CDSs (without protein) 47
Pseudo Genes (ambiguous residues) 0 of 47
Pseudo Genes (frameshifted) 31 of 47
Pseudo Genes (incomplete) 5 of 47
Pseudo Genes (internal stop) 21 of 47
Pseudo Genes (multiple problems) 10 of 47
CRISPR Arrays 1

Display Conventions and Configuration

The colours of the annotation corresponds with the reading frame of the gene:

  •  Red  + strand 1 frame
  •  Blue  + strand 2 frame
  •  Green  + strand 3 frame
  •  Purple  - strand 4 frame
  •  Orange  - strand 5 frame
  •  Turquoise  - strand 6 frame

Credits

Data were processed at the Bioinformatic Institute of Leipzig. For inquiries, please contact us at the following address: john (at) bioinf.uni-leipzig.de

References

DBLINK

BioProject PRJNA224116
BioSample SAMN10972983