LiftOff Genes Track Settings
 
LiftOff Genes Annotations based on GENCODE (from UW)   (All Genes tracks)

Display mode:       Reset to defaults

Label: Name or ID of item, ideally both human readable and unique    Alternative/human readable name   

Color track by codons: Help on codon coloring

Show codon numbering:

Display data as a density graph:

List subtracks: only selected/visible    all  
dense
 Configure
 LiftOff Genes (All)  LiftOff Genes - all annotations (from UW)   Schema 
dense
 Configure
 LiftOff Genes (ORFs)  LiftOff Genes V1 - annotations with ORFs (from UW)   Schema 

Description

A track showing gene models as from liftoff based on GENCODE produced by UW.

Methods

Display Conventions and Configuration

Liftoff was run with the following command using the comprehensive GenCode Release 35 (GRCh38.p13) gff. liftoff -dir {output.temp} -sc 0.85 -copies -p {threads} -g {input.gff} -o {output.gff} -u {output.unmapped} {input.t} {input.r} Custom scripts were used to make a bed file from the resulting gff.

Data access

Release history

  1. 09/08/2020

Contact

Contact Mitchell R. Vollger <mvollger@uw.edu>

Credits

Liftoff: an accurate gene annotation mapping tool, doi: https://doi.org/10.1101/2020.06.24.169680