Description
A track showing segmental duplications as generated by sedef on the assembly: chm13.draft_v1.0_plus38Y.
Column descriptions can be found here: columns.
Methods
Sedef was run with default parameters on a RepeatMasked genome assembly.
The resulting output (final.bed) was then converted into a browser friendly format (bed9 + extra fields).
Display Conventions and Configuration
Purple: less than 90% similarity
Light to dark gray: 90 - 98% similarity
Yellow: 98 - 99% similarity
Orange: greater than 99% similarity
Data access
Release history
- 2020/09/24, annotation for chm13.draft_v1.0_plus38Y.
Contact
Contact Mitchell R. Vollger <mvollger@uw.edu>
Credits
sedef: Fast Characterization of Segmental Duplications in Genome Assemblies (PMC6129265)
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