Description
RepeatMasker track updated as of May 31, 2021
RepeatMasker version 4.1.1
Search Engine: rmblast
RepeatMasker Database: Dfam
Methods
RepeatMasker with Dfam
Polished with modified overlap resolution pipeline
Display Conventions and Configuration
Color is based on repeat name or family:
| Repeat | Color | Repeat | Color |
|---|
| (CATTC)n |
| (GAATC)n | |
| ALR/Alpha |
| BSR/Beta | |
| CER |
| DNA | |
| GSAT |
| HSAT | |
| LINE |
| Low_complexity | |
| LSAU |
| LTR | |
| RC/Helitron |
| Retroposon | |
| RNA |
| rRNA | |
| SAR |
| Satellite/acro | |
| Satellite/telo |
| SATR1 | |
| scRNA |
| Simple repeat | |
| SINE |
| snRNA | |
| srpRNA |
| SSTI | |
| SUBTEL_sa |
| tRNA | |
| Novel |
| Unknown |
|
Data access
Release history
- 2020-09-22: CHM13 v1.0 release (chm13.draft_v1.0.fasta)
Contacts
Credits
Savannah Hoyt
Jessica Storer
Thanks to Arian Smit, Robert Hubley, and the Dfam project for providing the tools and models used to generate this track.
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