Validation ONT coverage Track Settings
 
ONT read coverage

Track collection: Validation of T2T assembly

+  Description
+  All tracks in this collection (5)

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Overlay method:
Type of graph:
Track height: pixels (range: 8 to 70)
Data view scaling: Always include zero: 
Vertical viewing range: min:  max:   (range: 0 to 200)
Transform function:Transform data points by: 
Windowing function: Smoothing window:  pixels
Negate values:
Draw y indicator lines:at y = 0.0:    at y =
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     ONT Pri coverage  ONT Primary read coverage   Schema 
     ONT marker assist coverage  ONT marker assisted read coverage   Schema 

Description

Read coverage

Methods

Input reads: HiFi and ONT reads (guppy 3.6.0)
Mapper: Winnowmap v2.01 release (--MD -W repetitive_k15.txt -ax [map-pb | map-ont])
Filter: Primary read alignments extracted with samtools view -F0x104

Display Conventions and Configuration

Gray: Primary alignments. ONT reads were further filtered for alignment block lengths > 1 kb and > 85 % identity
Black: Marker assisted alignments

Data access

Data is available on globus: team-curation/tracks/v1/coverage/*.cov.wig

Release history

  1. 2021 Apr 20: Initial upload for v1.0 release

Contact

Contact Arang Rhie <arang.rhie@nih.gov>

Credits

Polishing Team