Description
Centromeric Satellite Annotation
Methods
Satellite array annotations are defined by intersecting information across alpha HOR annotation track, repeatmasker tracks, and human satellite annotation tracks. The start and end of each region is defined by centromere haplotypes (as published relative to GRCh38 coordinates).
Display Conventions and Configuration
Colors
- Higher Order Repeats (hor): red
- Monomeric (mon) repeats: orange
- Human Satellites (hsat): blue
- Centric Satellite Transition Regions (ct): grey
- Beta Satellite (bsat): pink
- Other centromeric satellites (censat): teal
Data access
Data is available on globus: team-satellite/t2t-chm13.20200727.cenSat_annotation.bed
Release history
- 2020 August 13 : Initial upload for 20200727 release
- 2021 Feb 17: Updated
Contacts
Credits
Karen Miga
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