Cactus (simplified) hg38 Cactus Track Settings
 
hg38 Cactus Alignments not chained

Track collection: Cactus Alignment Tracks (simplified)

+  Description
+  All tracks in this collection (3)

Display mode:   

Alignment Gap/Insertion Display Options Help on display options
Draw double horizontal lines when both genome and query have an insertion
Draw a vertical purple line for an insertion at the beginning or end of the
query, orange for insertion in the middle of the query


Display data as a density graph:
View table schema

Description

Cactus reference alignments GRCh38 and t2t-chm13-v1.1, with Chimp (GCF_002880755.1/panTro6) as an out-group.

Methods

Standard Cactus alignment portocol

Display Conventions and Configuration

Four tracks are shown:

  • Cactus GRCh38 - alignments of GRCh38 to t2t-chm13-v1.1
  • Cactus CHM13 - self-alignments of t2t-chm13-v1.1
  • Cactus GRCh38 simplified - alignments of GRCh38 to t2t-chm13-v1.1 using PSL display, which is faster to view.
  • Cactus GRCh38 chained - alignments of GRCh38 to t2t-chm13-v1.1 chained alignments

Data access

Release history

Contacts

Credits