Hiller Lab 470 Mammals Track Settings
 
Hiller Lab 470 Mammals - 470 mammalian genomes aligned with Multiz by Michael Hiller's Group,

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Multiz Alignments ▾       Basewise Conservation (phyloP) ▾       Element Conservation (phastCons) ▾       Conserved Elements ▾      
 
Multiz Alignments Configuration

Species selection:  + - default

  Primates  + -

chimp
 bonobo
 gorilla
 orangutan
 northern white-cheeked gibbon
silvery gibbon
 rhesus
 crab-eating macaque
 gelada
 Japanese macaque
golden snub-nosed monkey
 green monkey
 olive baboon
 sooty mangabey
 mandrill
pig-tailed macaque
 Francois's langur
 Red shanked douc langur
 Ugandan red Colobus
 red guenon
Allen's swamp monkey
 black snub-nosed monkey
 Mona monkey
 drill
 Hanuman langur
angolan colobus
 De Brazza's monkey
 white-faced saki
 black-handed spider monkey
 tufted capuchin
mantled howler monkey
 Bolivian titi
 white-faced sapajou
 white-tufted-ear marmoset
 ma's night monkey
tamarin
 pygmy marmoset
 white-fronted capuchin
 proboscis monkey
 Bolivian squirrel monkey
squirrel monkey
 aye-aye
 tarsier
 babakoto
 Northern giant mouse lemur
black lemur
 mouse lemur
 greater bamboo lemur
 Sclater's lemur
 Coquerel's mouse lemur
Ring-tailed lemur
 Lesser dwarf lemur
 mouse lemur
 brown lemur
 sclater's lemur
Northern rufous mouse lemur
 mongoose lemur
 coquerel's sifaka
 slow loris
 bushbaby

  Euarchontoglires  + -

Sunda flying lemur
 chinese tree shrew
 tree shrew

  Carnivore  + -

harbor seal
 California sea lion
 walrus
 grizzly bear
 Steller sea lion
pacific walrus
 hawaiian monk seal
 northern fur seal
 Southern elephant seal
 Asian black bear
bearded seal
 gray seal
 Northern elephant seal
 ursMar1
 American black bear
giant panda
 cat
 Clouded leopard
 cheetah
 leopard
lion
 American black bear
 Canada lynx
 jaguarundi
 weddell seal
panTig1
 jaguar
 jaguar
 antarctic fur seal
 fossa
dog
 Spanish lynx
 Amur leopard cat
 enhLutKen1
 dog
lesser panda
 dingo
 Northern American river otter
 Eurasian river otter
 red fox
puma
 ermine
 kinkajou
 giant otter
 African hunting dog
striped hyena
 southern sea otter
 giant otter
 black-footed cat
 ratel
domestic ferret
 sable
 Arctic fox
 European polecat
 spotted hyena
Asian palm civet
 wolverine
 American mink
 meerkat
 banded mongoose
Cacomistle
 western spotted skunk
 dwarf mongoose
 meerkat
 North American badger
White-nosed coati
 raccoon
 African hunting dog

  Laurasiatheria  + -

black rhinoceros
 white rhinoceros
 greater Indian rhinoceros
 Sumatran rhinoceros
 Asiatic tapir
Brazilian tapir
 Asiatic tapir
 horse
 northern white rhinoceros
 ass
Equus burchelli boehmi
 donkey
 equPrz1
 Chinese pangolin
 Tree pangolin
Malayan pangolin
 Malayan pangolin
 Tree pangolin
 chinese pangolin
 Hispaniolan solenodon
Iberian mole
 eastern mole
 gracile shrew mole
 star-nosed mole
 shrew
hedgehog

  Cetartiodactyla  + -

grey whale
 sperm whale
 hippopotamus
 beluga whale
 common bottlenose dolphin
phyCat1
 Indo-pacific bottlenose dolphin
 killer whale
 Indo-pacific humpbacked dolphin
 lipVex1
Indo-pacific bottlenose dolphin
 Antarctic minke whale
 harbor porpoise
 harbor porpoise
 common bottlenose dolphin
dolphin
 Arabian camel
 hippopotamus
 Wild Bactrian camel
 Bactrian camel
alpaca
 pig
 cow
 water buffalo
 white-tailed deer
Pere David's deer
 zebu cattle
 sheep
 goat
 white-tailed deer
wild yak
 wild goat
 aoudad
 tibetan antelope
 Masai giraffe
bighorn sheep
 okapi
 greater kudu
 argali

  Artiodactyla  + -

Blue whale
 North Atlantic right whale
 pygmy Bryde's whale
 minke whale
 North Pacific right whale
humpback whale
 narwhal
 vaquita
 Pacific white-sided dolphin
 long-finned pilot whale
melon-headed whale
 bowhead whale
 Yangtze finless porpoise
 Indus River dolphin
 Fin whale
Sowerby's beaked whale
 pygmy sperm whale
 boutu
 guanaco
 Vicugna mensalis
Lama pacos huacaya
 llama
 franciscana
 Cuvier's beaked whale
 llama
Yarkand deer
 muntjak
 gaur
 Hog deer
 porcupine caribou
reindeer
 Asiatic mouflon
 giraffe
 African buffalo
 scimitar-horned oryx
Siberian ibex
 Reeves' muntjac
 Chacoan peccary
 roan antelope
 sable antelope
Eastern roe deer
 Chinese water deer
 white-tailed deer
 white-lipped deer
 giraffe
Nilgiri tahr
 Siberian musk deer
 Cobus hunteri
 Eurasian elk
 snow sheep
brindled gnu
 topi
 mule deer
 gemsbok
 lechwe
pronghorn
 gayal
 Thomson's gazelle
 waterbuck
 gerenuk
mountain goat
 domestic yak
 bison
 Chinese forest musk deer
 Harvey's duiker
impala
 springbok
 bighorn sheep
 klipspringer
 black muntjac
Przewalski's gazelle
 Kirk's dik-dik
 bush duiker
 Java mouse-deer
 Bohar reedbuck
saiga antelope
 bushbuck
 Central European red deer
 suni
 Grant's gazelle
lesser kudu
 royal antelope
 Maxwell's duiker
 steenbok
 lesser mouse-deer
alpine musk deer
 Alpine ibex

  Xenarthra  + -

southern two-toed sloth
 Hoffmann's two-fingered sloth
 southern two-toed sloth
 southern tamandua
 giant anteater
armadillo
 Southern three-banded armadillo

  Chiroptera  + -

greater horseshoe bat
 Chinese rufous horseshoe bat
 Bonin flying fox
 Indian flying fox
 black flying-fox
Malagasy flying fox
 Cantor's roundleaf bat
 Egyptian rousette
 large flying fox
 Leschenault's rousette
great roundleaf bat
 lesser dawn bat
 Malagasy straw-colored fruit bat
 long-tongued fruit bat
 straw-colored fruit bat
Brazilian free-tailed bat
 Madagascan rousette
 common vampire bat
 Pallas's mastiff bat
 pale spear-nosed bat
Lesser long-nosed bat
 Antillean ghost-faced bat
 Indian false vampire
 stripe-headed round-eared bat
 tailed tailless bat
Seba's short-tailed bat
 Jamaican fruit-eating bat
 Miniopterus schreibersii natalensis
 ptePar1
 Jamaican fruit-eating bat
Schreibers' long-fingered bat
 California big-eared bat
 Honduran yellow-shouldered bat
 lesser short-nosed fruit bat
 greater mouse-eared bat
Schizostoma hirsutum
 hog-nosed bat
 Northern long-eared myotis
 myoBra1
 big brown bat
little brown bat
 little brown bat
 greater bulldog bat
 david's myotis (bat)
 Murina feae
evening bat
 pallid bat
 hoary bat
 red bat
 Kuhl's pipistrelle
common pipistrelle
 common pipistrelle

  Glires  + -

gray squirrel
 Eurasian red squirrel
 woodchuck
 yellow-bellied marmot
 South African ground squirrel
Alpine marmot
 Gunnison's prairie dog
 woodchuck
 Himalayan marmot
 Daurian ground squirrel
Vancouver Island marmot
 Arctic ground squirrel
 squirrel
 North American porcupine
 mountain beaver
springhare
 Fat dormouse
 naked mole-rat
 crested porcupine
 Brazilian porcupine
chinchilla
 punctate agouti
 American beaver
 European rabbit
 woodland dormouse
pacarana
 Damara mole-rat
 rabbit
 snowshoe hare
 capybara
brush rabbit
 Montane guinea pig
 Patagonian cavy
 guinea pig
 hazel dormouse
rabbit
 Mountain hare
 brush-tailed rat
 northern gundi
 social tuco-tuco
dassie-rat
 nanGal1
 Greater cane rat
 nutria
 Peromyscus californicus subsp. insignis
Hesperomys crinitus
 prairie deer mouse
 oldfield mouse
 northern rock mouse
 white-footed mouse
cactus mouse
 hoary bamboo rat
 southern grasshopper mouse
 Gobi jerboa
 lesser Egyptian jerboa
Gambian giant pouched rat
 Chinese hamster
 muskrat
 pika
 African woodland thicket rat
Eurasian water vole
 African grass rat
 Northern mole vole
 mouse
 mouse
Stephens's kangaroo rat
 dipOrd2
 golden spiny mouse
 southern multimammate mouse
 meadow jumping mouse
short-tailed field vole
 fat sand rat
 western wild mouse
 Bank vole
 Ryukyu mouse
prairie vole
 Norway rat
 Transcaucasian mole vole
 shrew mouse
 great gerbil
Egyptian spiny mouse
 rat
 steppe mouse
 reed vole
 Common vole
root vole
 hispid cotton rat
 black rat
 desert woodrat
 golden hamster
Mongolian gerbil
 Pacific pocket mouse
 cavApe1
 European woodmouse

  Afrotheria  + -

manatee
 African savanna elephant
 Asiatic elephant
 dugong
 aardvark
Cape rock hyrax
 yellow-spotted hyrax
 cape golden mole
 tenrec
 Steller's sea cow
cape elephant shrew
 Talazac's shrew tenrec

  Metatheria  + -

common wombat
 koala
 common brushtail
 Leadbeater's possum
 eastern gray kangaroo
ground cuscus
 tammar wallaby
 yellow-footed antechinus
 western gray kangaroo
 Tasmanian devil
coppery ringtail possum
 opossum
 Agile Gracile Mouse Opossum
 red kangaroo
 North American opossum
golden ringtail possum
 Western ringtail oppossum
 Tasmanian wolf
 wallaby

  Monotremata  + -

platypus
 Australian echidna

Multiple alignment base-level:
Display bases identical to reference as dots
Display chains between alignments

Codon Translation:
Default species to establish reading frame:
No codon translation
Use default species reading frames for translation
Use reading frames for species if available, otherwise no translation
Use reading frames for species if available, otherwise use default species
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 470 phyloP  470 mammals Basewise Conservation by PhyloP   Schema 
 
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 Multiz 470-way  Multiz Alignments of 470 mammals   Schema 
 
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 Cons 470 Mammals  470 mammals conservation by PhastCons   Schema 
 
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 470 Mamm. El  470 mammals Conserved Elements   Schema