Zoonomia+Primates 447 Track Settings
 
Zoonomia+Primates 447 - 447 mammals, including 233 primates, aligned with Cactus, for Kuderna et al. 2023

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Species selection:  + - default

  Primates catarrhini  + -

chimpanzee
 western gorilla
 Eastern Gorilla
 Sumatran orangutan
 Bornean orangutan
Rhesus macaque
 gelada
 stump-tailed macaque
 Northern Talapoin monkey
 long-tailed macaque
Allen's swamp monkey
 siamang
 black crested mangabey
 drill
 Bonnet Macaque
Red-capped Mangabey
 Golden-bellied Mangabey
 Owl-faced monkey
 Siberut Macaque
 southern pig-tailed macaque
white-naped Mangabey
 Tonkean Macaque
 Diana monkey
 common Patas monkey
 Northern Pig-tailed Macaque
Moor Macaque
 Guinea Baboon
 hamadryas baboon
 lion-tailed macaque
 olive baboon
Roloway monkey
 Kinda Baboon
 Chacma Baboon
 Sun-tailed monkey
 golden snub-nosed monkey
Vervet monkey
 sooty mangabey
 green monkey
 De Brazza's monkey
 Yellow Baboon
crested macaque
 proboscis monkey
 Preuss's monkey
 Putty-nosed monkey
 Javan langur
Sykes' monkey
 L'Hoest's monkey
 Crowned monkey
 Mitered langur
 gray-shanked douc
Mona monkey
 Spot-nosed monkey
 grivet monkey
 Lowe's monkey
 Northern yellow-cheeked crested gibbon
Southern yellow-cheeked crested gibbon
 Japanese macaque
 Upper Guinea red Colobus
 southern white-cheeked crested gibbon
 southern white-cheeked crested gibbon
Taiwanexe macaque
 black-shanked douc
 black-shanked douc
 King Colobus
 Western black crested gibbon
Udzungwa red Colobus
 Golden langur
 Kloss's gibbon
 Dusky langur
 Zanzibar red Colobus
Germain's langur
 Hatinh langur
 Mustached monkey
 Laos langur
 Francois's langur
Purple-faced langur
 capped langur
 Ashy red Colobus
 East Javan Langur
 Red-tailed monkey
Sunda Silvery Langur
 Nilgiri langur
 Indochinese Gray Langur
 white-headed langur
 bonobo
agile gibbon
 Shan langur
 Nepal Sacred langur
 Western gray gibbon
 Southern gray gibbon
Tufted Gray langur
 Malabar Sacred langur
 guereza
 Bengal sacred langur
 pileated gibbon
pileated gibbon
 Yunnan snub-nosed monkey
 Stryker's snub-nosed monkey
 Angolan colobus
 Tibetan Macaque
Phayre's langur
 Assamese macaque
 Eastern hoolock Gibbon
 mandrill

  Primates platyrrhini  + -

Golden-faced saki
 Hairy saki
 white-faced saki
 Mittermeier's saki
 Buffy saki
Pissinatti's saki
 Vanzolini's bald-faced saki
 Bald Uakari
 Araca Uakari
 Golden-brown Uakari
Neblina black Uakari
 Guianan Bearded saki
 Spix's Bearded saki
 white-chested Titi
 brown Titi
Hoffmanns's Titi
 Milton's Titi
 white-collared Titi
 Ashy Titi
 Prince Bernhard's Titi
Yellow-handed Titi
 Coppery Titi
 Chestnut-bellied Titi
 Hershkovitzs Titi
 Red-bellied Titi
Groves's Titi
 ateles_geoffroyi_a
 atele_geoffroyi_b
 Rio Jurua Collared Titi
 Red-faced black spider monkey
black spider monkey
 white-whiskered spider monkey
 white-bellied spider monkey
 Common Woolly monkey
 large-headed capuchin
Spix's white-fronted capuchin
 Guinan Weeper capuchin
 mantled howler
 white-fronted capuchin
 Humboldt's night monkey
Gray-legged Night monkey
 black-and-gold howler
 Spix's night monkey
 Eastern Red-handed howler
 Spix's Red-handed howler
Azara's night monkey
 Purús red howler monkey
 Amazon black howler
 Guianan red howler
 Jurua red howler monkey
Colombian red howler
 brown capuchin
 Ma's night monkey
 black-capped squirrel monkey
 Red-nosed Bearded saki
black-mantled tamarin
 Spix's Saddle-back tamarin
 Illiger's Saddle-back tamarin
 Cotton-top tamarin
 Pied Bare-faced tamarin
Geoffroy's tamarin
 Mottled-face tamarin
 Mustached tamarin
 Emperor tamarin
 Guianan squirrel monkey
Red-bellied tamarin
 Goeldi's monkey
 Central American squirrel monkey
 Golden-headed Lion tamarin
 golden lion tamarin
Humboldt's squirrel monkey
 Golden-backed squirrel monkey
 Ecuadorian squirrel monkey
 common marmoset
 Southern Pygmy Marmoset
Northern Pygmy Marmoset
 Santarem marmoset
 black-crowned Dwarf Marmoset
 Schneider's marmoset
 silvery marmoset
Midas tamarin
 Wied's Marmoset
 Geoffroy's tufted-ear marmoset

  Primates tarsiidae  + -

Western tarsier
 Philippine tarsier
 Lariang tarsier
 Wallace's tarsier

  Primates strepsirrhini  + -

aye-aye
 Crowned Sifaka
 Perrier's Sifaka
 black-and-white ruffed lemur
 Diademed Sifaka
Milne-Edward's Sifaka
 indri
 Tattersall's Sifaka
 Eastern Woolly lemur
 Verreaux's Sifaka
Peyrieras's Woolly lemur
 red ruffed lemur
 greater bamboo lemur
 Red-bellied lemur
 mongoose lemur
Greater Dwarf lemur
 Crowned lemur
 black lemur
 fat-tailed dwarf lemur
 blue-eyed black lemur
Coquerel's Sifaka
 Red-collared brown lemur
 Red-tailed sportive lemur
 Rufous brown lemur
 Sanford's brown lemur
white-fronted brown lemur
 Gray's sportive lemur
 brown lemur
 Sahafary sportive lemur
 Northern Bamboo lemur
Lac Alaotra Bamboo lemur
 Common Gray Bamboo lemur
 Ankarana sportive lemur
 ring-tailed lemur
 Gilbert's Gray Bamboo lemur
Southern Bamboo lemur
 Demidoff's Dwarf Galago
 northern giant mouse lemur
 gray mouse lemur
 Garnetts greater galago
Northern Lesser Galago
 Thick-tailed Greater Galago
 Gray Slender Loris
 red slender loris
 West African Potto
East African Potto
 southern leser galago
 Pygmy Slow Loris
 Bengal slow loris
 Calabar Angwantibo
Malaysian slow loris

  Carnivora  + -

jaguar
 leopard
 giant panda
 Hawaiian monk seal
 California sea lion
Greenland wolf
 Pacific walrus
 domestic cat (Fca126)
 northern elephant seal
 domestic cat
domestic dog (BS72/Village Dog)
 German Shepherd dog (Mischka)
 dingo
 raccoon dog
 fossa
polar bear
 Asian palm civet
 African hunting dog
 Arctic fox
 dog
striped hyena
 cheetah
 tiger
 Sea otter
 giant otter
bat-eared fox
 Weddell seal
 Lesser panda
 ratel
 banded mongoose
dwarf mongoose
 meerkat
 puma
 black-footed cat
 European polecat
western spotted skunk

  Laurasiatheria  + -

Sumatran rhinoceros
 black rhinoceros
 Asiatic tapir
 Brazilian tapir
 northern white rhinoceros
ass
 Southern white rhinoceros
 Przewalski's horse
 horse
 Malayan pangolin
Chinese pangolin
 Hispaniolan solenodon
 eastern mole
 gracile shrew mole
 star-nosed mole
western European hedgehog
 European shrew
 Indochinese shrew

  Xenarthra  + -

Hoffmann's two-fingered sloth
 nine-banded armadillo
 giant anteater
 southern tamandua
 placentals
southern two-toed sloth
 screaming hairy armadillo

  Artiodactyla  + -

North Pacific right whale
 grey whale
 hippopotamus
 Minke whale
 beluga whale
Antarctic minke whale
 boutu
 harbor porpoise
 narwhal
 Yangtze River dolphin
killer whale
 Ganges River dolphin
 Yangtze finless porpoise
 Sowerby's beaked whale
 alpaca
Cuvier's beaked whale
 Bactrian camel
 Arabian camel
 wild Bactrian camel
 pygmy sperm whale
Chacoan peccary
 reindeer
 Pere David's deer
 okapi
 Masai giraffe
Siberian musk deer
 water buffalo
 cow
 pronghorn
 white-tailed deer
aoudad
 bighorn sheep
 goat
 Nilgiri tahr
 hirola
wild yak
 American bison
 sheep
 chiru
 wild goat
Java mouse-deer
 pig
 zebu cattle
 common bottlenose dolphin
 Saiga antelope

  Chiroptera  + -

Chinese rufous horseshoe bat
 black flying fox
 Cantor's roundleaf bat
 Egyptian rousette
 long-tongued fruit bat
large flying fox
 Brazilian free-tailed bat
 great roundleaf bat
 straw-colored fruit bat
 Antillean ghost-faced bat
tailed tailless bat
 common vampire bat
 hairy big-eared bat
 stripe-headed round-eared bat
 Seba's short-tailed bat
Jamaican fruit-eating bat
 Indian false vampire
 Schreibers' long-fingered bat
 greater bulldog bat
 Natal long-fingered bat
hog-nosed bat
 Parnell's mustached bat
 greater mouse-eared bat
 Ashy-gray tube-nosed bat
 David's myotis
Brandt's bat
 big brown bat
 red bat
 little brown bat
 common pipistrelle

  Afrotheria  + -

African savanna elephant
 Florida manatee
 yellow-spotted hyrax
 Cape rock hyrax
 aardvark
Cape golden mole
 Cape elephant shrew
 Talazac's shrew tenrec
 small Madagascar hedgehog

  Euarchontoglires  + -

Sunda flying lemur
 Chinese tree shrew
 South African ground squirrel
 large tree shrew
 mountain beaver
Alpine marmot
 Daurian ground squirrel
 crested porcupine
 thirteen-lined ground squirrel
 American beaver
long-tailed chinchilla
 punctate agouti
 pacarana
 fat dormouse
 northern gundi
naked mole-rat
 Patagonian cavy
 capybara
 Montane guinea pig
 domestic guinea pig
degu
 lowland paca
 social tuco-tuco
 Damara mole-rat
 woodland dormouse
Desmarest's hutia
 Upper Galilee mountains blind mole rat
 nutria
 hazel dormouse
 dassie-rat
greater cane rat
 snowshoe hare
 Gambian giant pouched rat
 Prairie deer mouse
 southern grasshopper mouse
rabbit
 muskrat
 northern mole vole
 Mongolian gerbil
 fat sand rat
house mouse
 Chinese hamster
 Norway rat
 western wild mouse
 meadow jumping mouse
prairie vole
 Ryukyu mouse
 Egyptian spiny mouse
 Gobi jerboa
 shrew mouse
Transcaucasian mole vole
 hispid cotton rat
 lesser Egyptian jerboa
 Brazilian guinea pig
 golden hamster
Stephens's kangaroo rat
 American pika
 Ord's kangaroo rat
 little pocket mouse

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 Configure 		 447 phyloP REV  447 mammals / 233 primates Basewise Conservation by PhyloP phyloFit REV model   Schema 
 
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 Configure 		 447 phyloP primates LRT  447 mammals / 233 primates Basewise Conservation by PhyloP, primates subset LRT   Schema 
 
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 Cactus 447-way  Cactus alignment on 447 mammal species, including Zoonomia genomes and 233 primates   Schema