Affy Archive Affy U133 Track Settings

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Alignments of Affymetrix Consensus/Exemplars from HG-U133

Track collection: Affymetrix Archive

Description

All tracks in this collection (3)

Display mode:

Alignment Gap/Insertion Display Options Help on display options
	Draw double horizontal lines when both genome and query have an insertion
	Draw a vertical purple line for an insertion at the beginning or end of the query, orange for insertion in the middle of the query

Display data as a density graph:

View table schema

Data last updated at UCSC: 2015-01-08

Description

This track shows the location of the consensus and exemplar sequences used for the selection of probes on the Affymetrix HG-U133A and HG-U133B chips.

Methods

Consensus and exemplar sequences were downloaded from the Affymetrix Product Support and mapped to the genome using blat followed by pslReps with the parameters:

   -minCover=0.5 -minAli=0.97 -nearTop=0.005

Credits

Thanks to Affymetrix for the data underlying this track.